METAL
Resource Report
Resource Website
1000+ mentions
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METAL (RRID:SCR_002013)
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software application, software resource
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Software application designed to facilitate meta-analysis of large datasets (such as several whole genome scans) in a convenient, rapid and memory efficient manner. (entry from Genetic Analysis Software)
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gene, genetic, genomic, whole genome
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is listed by: OMICtools
is listed by: Genetic Analysis Software
has parent organization: University of Michigan; Ann Arbor; USA
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PMID:20616382 |
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nlx_154476, OMICS_00239 |
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SCR_002013 |
Metal - Meta Analysis Helper, METa AnaLysis Helper |
2026-07-26 09:03:07 |
2273 |
OMICtools
Resource Report
Resource Website
10+ mentions
|
OMICtools (RRID:SCR_002250)
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OMICtools
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data or information resource, catalog, database
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THIS RESOURCE IS NO LONGER IN SERVICE. Documented Jul 19, 2024. Metadatabase manually curated that provides web accessible tools related to genomics, transcriptomics, proteomics and metabolomics. Used as informative directory for multi-omic data analysis.
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metadatabase, manually, curated, tool, genomic, transcriptomic, proteomic, metabolomic, data
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lists: ncdfFlow
lists: BSmooth-align
lists: 4Peaks
lists: CSDeconv
lists: Tablet
lists: GenomicRanges
lists: SNPSVM
lists: ReadqPCR
lists: SP-Designer
lists: CorMut
lists: ChIPmeta
lists: FACS
lists: metaSeq
lists: Dissect
lists: Fusion Analyser
lists: FusionCatcher
lists: GASV
lists: GHOSTM
lists: nFuse
lists: PD5
lists: Patchwork
lists: QuadGT
lists: VariantAnnotation
lists: ReQON
lists: SnowsShoes-FTD
lists: timecourse
lists: SOAPfuse
lists: SOAPfusion
lists: pFind Studio: pLink
lists: Spotfinder
lists: AbMining ToolBox
lists: SNAVI
lists: MetAssign
lists: JChemPaint
lists: siRNArules
lists: AutoPrime
lists: RmiR.Hs.miRNA
lists: MysiRNA-designer
lists: TACOA
lists: Treephyler
lists: MedGen
lists: D-Tailor
lists: BioLemmatizer
lists: AffyRNADegradation
lists: Orphelia
lists: ArrayExpress (R)
lists: Parallel-META
lists: CovalentDock Cloud
lists: DOCK
lists: exomeSuite
lists: SPAdes
lists: Sequence Read Format
lists: FastQ Screen
lists: GEOquery
lists: Bovine Genome Database
lists: GISTIC
lists: DESeq
lists: Postgwas
lists: BLASTPLOT
lists: miRanalyzer
lists: Magnolya
lists: GMATo
lists: GemSIM
lists: Grinder
lists: Illuminate
lists: RNAcontext
lists: MIMOSA
lists: F2DockClient
lists: FlexX
lists: Glide
lists: GOLD
lists: Molegro Virtual Docker
lists: Sanjeevini
lists: SODOCK
lists: HEM
lists: Surflex-Dock
lists: Cascleave
lists: MetaDE
lists: Cell Death Proteomics Database
lists: GPS-Calpain Cleavage Detector
lists: GraBCas
lists: c3net
lists: Context Likelihood of Relatedness
lists: GENIE3
lists: Inferelator
lists: MODENT - A Tool For Reconstructing Gene Regulatory Networks
lists: MRNet
lists: UnSplicer
lists: Duplicate reads removal
lists: PEpiD
lists: TAPIR: target prediction for plant microRNAs
lists: iOMICS
lists: Megraft
lists: VARiD
lists: Cistrome
lists: PSGInfer
lists: MochiView
lists: RSEM
lists: RNAmotifs
lists: M(at)CBETH
lists: MS-Spectre
lists: Quant
lists: RNASeqReadSimulator
lists: iFad
lists: GramCluster
lists: GProX
lists: PeptideProphet
lists: CNTools
lists: Lasergene's SeqMan Pro
lists: ProteinProphet
lists: OMSSAPercolator
lists: Flicker
lists: cn.FARMS
lists: LIPAGE
lists: DNASTAR: Lasergene Core Suite
lists: Clonality
lists: oneClickCGH
lists: CGH Fusion
lists: Screensaver
lists: fqzcomp
lists: ArrayPlex
lists: MiRdup
lists: MeQA
lists: Methyl-Analyzer
lists: Annotare
lists: CpGassoc
lists: Koadarray
lists: RADtools
lists: rtd
lists: ABrowse
lists: GPViz
lists: cuteNMR
lists: Jnomics
lists: JMolDraw
lists: CGAP-Align
lists: ARACHNE
lists: Kinannote
lists: CLC Main Workbench
lists: ParseCNV
lists: TAPS
lists: PyroHMMsnp
lists: TransView
lists: pvac
lists: riboPicker
lists: NucleoFinder
lists: bzip2
lists: GENSENG
lists: AS-Peak
lists: is-rSNP
lists: ILLUMINUS
lists: QUALIFIER
lists: FunctSNP
lists: Micro-Analyzer
lists: flowStats
lists: flowPeaks
lists: metaMA
lists: rTANDEM
lists: flowFlowJo
lists: TargetCaller
lists: PSCBS
lists: iASeq
lists: d2-tools
lists: PEPPER
lists: OLINgui
lists: TNO-DECO
lists: SigFuge
lists: stsPlots
lists: Sulfinator
lists: Rdisop
lists: pbcore
lists: GeneExpressionSignature
lists: sybil - Efficient Constrained Based Modelling in R
lists: msbwt
lists: MetaDrug
lists: Reprever
lists: POPBAM
lists: SAMBLASTER
lists: SpeedSeq
lists: pyQPCR
lists: RefFinder
lists: PGS
lists: miRprimer
lists: iBMQ
lists: NIMBL
lists: TDARACNE
lists: bamova
lists: BAIT
lists: ARNIE
lists: fourSig
lists: Mfuzz
lists: MaryGold
lists: TOPPAS
lists: SPHINX
lists: PhyloPythia
lists: MATCHCLIP
lists: mzMatch
lists: Sequence Search and Alignment by Hashing Algorithm
lists: ESPRIT
lists: DySC
lists: FPSAC
lists: Scaffold builder
lists: SNPiR
lists: ACCUSA2
lists: MuTect
lists: Pindel
lists: rSeq
lists: GERP
lists: SiPhy
lists: wANNOVAR
lists: ViReMa
lists: Smart Dictionary Lookup
lists: VariantMaster
lists: GeneWays
lists: AdaptiveCrawler
lists: NGS-Cleaner
lists: flowQ
lists: Database Enabled Code for Ideal Probe Hybridization Employing R
lists: NGSmethPipe
lists: Pyrocleaner
lists: DecGPU
lists: drFAST
lists: MPscan
lists: TAPyR
lists: MutPred Splice
lists: ContEst
lists: Mini Analysis Guide for Microarrays
lists: DDBJ Omics Archive
lists: Chromas
lists: OnEx - Ontology Evolution Explorer
lists: BEBaC
lists: FlipFlop
lists: Phosphor Antibody Array Data Analysis
lists: PhenoFam
lists: forqs
lists: GMcloser
lists: GenomeWeb
lists: Bycom
lists: CorQ
lists: NGS tools for the novice
lists: Opera
lists: SRMA
lists: DeNovoGear
lists: VarB
lists: BAMseek
lists: TriageTools
lists: clipcrop
lists: detecttd
lists: FastUniq
lists: GEUVADIS
lists: TMAP
lists: BISMA
lists: FineSplice
lists: RMAP
lists: Sequencing Analysis Software
lists: BLASR
lists: GlycoWorkbench
lists: jmzIdentML API
lists: SciRoKo
lists: HapCompass
lists: JBrowse
lists: DSRC
lists: fastqz
lists: GDC
lists: GRS
lists: PREFAB
lists: BLASTP
lists: Google Compute Engine
lists: SplitSeek
lists: ASC
lists: NPEBseq
lists: FUSIM
lists: Geoffs Bio-Directories
lists: Phred
lists: MassGenomics
lists: Illuminator
lists: BAC
lists: targetscan.Hs.eg.db
lists: RmiR
lists: MmPalateMiRNA
lists: Starr
lists: bsseq
lists: Qvalue
lists: ExomePeak
lists: NextGenSeq(at)nature.com
lists: AutoAssemblyD
lists: CUDA-EC
lists: rGADEM
lists: qips
lists: PICS
lists: Jmosaics
lists: SparseAssembler
lists: BreakFusion
lists: ParticleCall
lists: DSGseq
lists: R453Plus1Toolbox
lists: SynView
lists: ShortFuse
lists: Cancer Gene Index
lists: jmzML
lists: CASVM
lists: Birdseed
lists: Reaper - Demultiplexing trimming and filtering sequencing data
lists: GimmeMotifs
lists: skewer
lists: flowWorkspace
lists: massiR
lists: Transposon Insertion Finder
lists: Shimmer
lists: GenVision
lists: DiMO
lists: MetaPhyl
lists: WiggleTools
lists: EMI
lists: SplicePlot
lists: CrossMap
lists: GraphIBD
lists: rbsurv
lists: Skylign
lists: HMMvar
lists: tbvar
lists: STRViper
lists: Breakway
lists: Genometa
lists: CATCHprofiles
lists: VAAL
lists: SLOPE
lists: BreakSeq
lists: Anchored Assembly
lists: Bionimbus
lists: ChIPMunk
lists: RDPipeline
lists: PeakAnalyzer
lists: SomaticCall
lists: Baa.pl
lists: VirusHunter
lists: seq2HLA
lists: MUMmerGPU
lists: GeneMeta
lists: GenoMiner
lists: GenoViewer
lists: sim4cc
lists: GenomicTools
lists: Omixon Target HLA Typing
lists: Omixon Target Data Analysis
lists: PARalyzer
lists: QualiMap
lists: Lab7
lists: mlgt
lists: BSSim
lists: Golden Helix GenomeBrowse
lists: HiPipe
lists: MADAM
lists: Microarray Data Analysis System
lists: Automated Microarray Pipeline
lists: MergeMaid
lists: OmicsOffice for NGS SeqSolve
lists: categoryCompare
lists: metahdep
lists: Plantagora
lists: QUAST
lists: TileQC
lists: VectorFriends
lists: vcflib
lists: PHACCS
lists: Sequedex
lists: Genome Trax
lists: VCFtools
lists: NGSUtils
lists: ChIP-seq
lists: Tally
lists: mapDamage
lists: freeIbis
lists: piCALL
lists: ERGO
lists: TALLYMER
lists: KMC
lists: DSK
lists: Mutation Surveyor
lists: BFCounter
lists: snpStats: SnpMatrix and XSnpMatrix classes and methods
lists: CNVtools
lists: CGEN
lists: RCASPAR
lists: iterativeBMAsurv
lists: multtest
lists: globaltest
lists: SABER
lists: Local Ancestry in adMixed Populations
lists: GemTools
lists: MinimumDistance
lists: ipPCA
lists: ADMIXTURE
lists: frappe
lists: Mutascope
lists: metabnorm
lists: VegaMC
lists: VanillaICE
lists: SNPchip
lists: SMAP
lists: quantsmooth
lists: mBPCR
lists: ITALICS
lists: GenoSet
lists: exomeCopy
lists: CGHregions
lists: CGHbase
lists: BlindCall
lists: beadarraySNP
lists: SSCprofiler
lists: CGH-Explorer
lists: GLAD
lists: SNP and Variation Suite SNP Analysis
lists: SNP and Variation Suite CNV Analysis
lists: ProbRNA
lists: methylMnM
lists: methyAnalysis
lists: les
lists: ARRmNormalization
lists: ChIPsim
lists: Sherman
lists: yaqcaffy
lists: wateRmelon
lists: sRAP
lists: spotSegmentation
lists: SNM
lists: SNAGEE
lists: Simpleaffy
lists: qcmetrics
lists: OLIN
lists: MANOR
lists: limmaGUI
lists: ffpe
lists: dyebias
lists: DEXUS
lists: BeadDataPackR
lists: aroma.light
lists: ArrayTools
lists: beadarray
lists: arrayQuality
lists: arrayMvout
lists: affyQCReport
lists: affyPLM
lists: affylmGUI
lists: AffyExpress
lists: waveTiling
lists: KAnalyze
lists: gprege
lists: oneChannelGUI
lists: CYCLE
lists: LMGene
lists: factDesign
lists: pickgene
lists: betr
lists: NGSrich
lists: SCAN.UPC
lists: arrayQualityMetrics
lists: CALIB
lists: DEDS
lists: Harshlight
lists: MiChip
lists: OCplus
lists: bridge
lists: FARMS
lists: fRMA
lists: genArise
lists: lapmix
lists: maCorrPlot
lists: maSigPro
lists: MACAT
lists: maigesPack
lists: MDQC
lists: metaArray
lists: nnNorm
lists: plgem
lists: PVCA
lists: RAMA
lists: stepNorm
lists: virtualArray
lists: LPE
lists: DDBJ Sequence Read Archive
lists: WegoLoc
lists: Mugsy
lists: Mspire-Simulator
lists: CytoSPADE
lists: vsn
lists: ACME
lists: GenGIS
lists: CoGAPS
lists: NTAP
lists: ToppCluster
lists: PyLOH
lists: Nebula
lists: Sequencher
lists: flowFP
lists: ChIPseeqer
lists: CisGenome
lists: CGHcall
lists: rMAT
lists: TileMap
lists: Clustal Omega
lists: BLASTN
lists: SeqScape Software
lists: BACContigEditor
lists: Human Gene Mutation Database
lists: AnimalTFDB
lists: asSeq
lists: Cuffdiff
lists: BLASTX
lists: SLqPCR
lists: rSeqDiff
lists: AffinDB
lists: Enriched Domain Detector
lists: A Classification of Mobile genetic Elements
lists: PELICAN
lists: nondetects
lists: rlsim
lists: Chilibot: Gene and Protein relationships from MEDLINE
lists: unifiedWMWqPCR
lists: HAPLOPAINTER
lists: HOMOZYGOSITYMAPPER
lists: QuasiSeq
lists: sSeq
lists: GERMLINE
lists: MCMC.qpcr
lists: CNVrd2
lists: TaLasso
lists: pairedBayes
lists: RNASeqBias
lists: plateCore
lists: PLINK
lists: MACH 1.0
lists: PennSeq
lists: FACTA+.
lists: Prediction of Amyloid Structure Aggregation
lists: TANGO
lists: DNACLUST
lists: InterMine
lists: MSClust
lists: ReCount - A multi-experiment resource of analysis-ready RNA-seq gene count datasets
lists: RSVSim
lists: TCC
lists: SAMstrt
lists: pRESTO
lists: MEME Suite - Motif-based sequence analysis tools
lists: PoissonSeq
lists: CQN
lists: GLiMMPS
lists: TEMP
lists: BEAGLE
lists: SPP
lists: BIRDSUITE
lists: NASTIseq
lists: BREAKDANCER
lists: CAROL
lists: COMPASS
lists: CASAVA
lists: flowClust
lists: HSA
lists: SPADE
lists: AStalavista
lists: Visual Molecular Dynamics
lists: EXTREME
lists: CYRILLIC
lists: DINDEL
lists: ASprofile
lists: OrderedList
lists: GenABEL
lists: CCAT
lists: Alt Event Finder
lists: BroadPeak
lists: SamSPECTRAL
lists: THetA
lists: TCW
lists: GATK
lists: Degust
lists: flowUtils
lists: DAVID
lists: RchyOptimyx
lists: StatAlign
lists: Arabidopsis thaliana Protein Interactome Database
lists: FGED
lists: ExpressionPlot
lists: S-MART
lists: Pecan
lists: SeqMonk
lists: Ray
lists: tbrowse
lists: Bacteriome.org
lists: Apollo
lists: RAVEN
lists: PEDIGRAPH
lists: BAliBASE
lists: TEQC
lists: rSNPs MAPPER
lists: rSNPBase
lists: SNP Function Portal
lists: flowType
lists: SNPper
lists: MADELINE
lists: CanSNPer
lists: ADaCGH2
lists: SGA
lists: NormaCurve
lists: GapMis
lists: TRAMS
lists: SNPMeta
lists: SNPAAMapper
lists: METAL
lists: OLORIN
lists: openADAM
lists: SeqEM
lists: SHARCGS
lists: DMET-Analyzer
lists: PEDHUNTER
lists: AffyPipe
lists: pSTIING
lists: PTMcode
lists: SHORTY
lists: POLYMUTT
lists: TissueNet - The Database of Human Tissue Protein-Protein Interactions
lists: TRIP Database
lists: SNVer
lists: BISC
lists: Primate Orthologous Exon Database
lists: PurBayes
lists: PyroHMMvar
lists: flowViz
lists: ChIPSeq Peak Finder
lists: SpliceAid-F
lists: Vennt
lists: flowTrans
lists: Spliceosome Database
lists: cisRED: cis-regulatory element
lists: ASPicDB
lists: SAMTOOLS
lists: HEXEvent
lists: DBASS
lists: FlyFactorSurvey
lists: SNAP - SNP Annotation and Proxy Search
lists: STIFDB
lists: Cake
lists: MPromDb
lists: ProTISA
lists: circlize
lists: AmiGO
lists: flowQB
lists: Cinteny
lists: RegPrecise
lists: STRUCTURE
lists: SVA
lists: SYZYGY
lists: TcoF
lists: Matchprot
lists: WebGeSTer DB
lists: pfSNP
lists: shinyTANDEM
lists: CistromeMap
lists: metaRNASeq
lists: ZOOM
lists: flowPlots
lists: ImaGene
lists: VAAST
lists: ARACNE
lists: FR-HIT
lists: PROVEAN
lists: flowPhyto
lists: flowCore
lists: flowMerge
lists: RankAggreg
lists: ConsensusPathDB
lists: MAIA (Microarray Image Analysis)
lists: CORUM
lists: CoryneRegNet
lists: miso-lims
lists: COSMIC - Catalogue Of Somatic Mutations In Cancer
lists: cpnDB: A Chaperonin Database
lists: flowMap
lists: rmeta
lists: flowMeans
lists: CTCFBSDB
lists: spliceR
lists: flowMatch
lists: flowFit
lists: DEMI
lists: Binding MOAD
lists: DBD: Transcription factor prediction database
lists: CodonCodes TraceViewer
lists: RelocaTE
lists: MAGE
lists: flowCyBar
lists: Iterative Signature Algorithm
lists: Variant Reporter Software
lists: RepARK
lists: PolyPhred
lists: dbSNP
lists: BEETL-fastq
lists: DWGSIM
lists: Ensembl
lists: DBTBS
lists: MIAME
lists: MAQC
lists: HaploClique
lists: DBTSS: Database of Transcriptional Start Sites
lists: DNA DataBank of Japan (DDBJ)
lists: ISO
lists: SBARS
lists: Clinical and Laboratory Standards Institute
lists: JGI Genome Portal
lists: Cancer Genomics Consortium
lists: BEAT
lists: DOMINO: Domain peptide interactions
lists: R Tutorial - An R Introduction to Statistics
lists: R Tutorial
lists: DOMINE: Database of Protein Interactions
lists: GenomeSmasher
lists: DOSY Toolbox
lists: MUMA
lists: Database of Rice Transcription Factors
lists: VennDiagram
lists: Quick-R
lists: EcoCyc
lists: Tree of Life
lists: flowBeads
lists: EDAS - EST-Derived Alternative Splicing Database
lists: eggNOG
lists: NRDR
lists: YLoc
lists: CAMERA - Collection of annotation related methods for mass spectrometry data
lists: EID: Exon-Intron Database
lists: WoLF PSORT
lists: Entrez Gene
lists: Mason
lists: QualitySNPng
lists: EPDnew
lists: realSFS
lists: pymzML
lists: RUbioSeq
lists: PBSIM
lists: PennCNV
lists: pIRS
lists: PeptideShaker
lists: ShotGun
lists: Gibbs Motif Sampler
lists: Zebrafish Information Network (ZFIN)
lists: Wessim
lists: BioStar
lists: MBASED
lists: discoSnp
lists: RVD
lists: SEEK
lists: MethylAid
lists: ExomeDepth
lists: libmgf
lists: Autophagy Database
lists: T3DB
lists: RopeBWT2
lists: e-Driver
lists: sapFinder
lists: PharmGKB
lists: CTF
lists: SuperTarget
lists: DrugBank
lists: PANDAseq
lists: NCBI database of Genotypes and Phenotypes (dbGap)
lists: leeHom
lists: Reflect
lists: Mapix
lists: Rainbow
lists: CASBAH
lists: TelSeq
lists: Pathview
lists: GLProbs
lists: rBiopaxParser
lists: DSS
lists: GATE
lists: NetPathMiner
lists: NMR metabolomics database of Linkoping
lists: GenBank
lists: HINT
lists: libCSAM
lists: RNA Abundance Database
lists: GeneCards
lists: BINOCh
lists: AliView
lists: TherMos
lists: ANDES
lists: PacmonSTR
lists: RMassBank
lists: FisHiCal
lists: Mutation Annotation and Genomic Interpretation
lists: Circleator
lists: IMEx - The International Molecular Exchange Consortium
lists: Batch Oligo Selection Script
lists: iontree
lists: MicroVigene
lists: Greengenes
lists: Basic4Cseq
lists: rDock
lists: hot scan
lists: International HapMap Project
lists: BiGGR
lists: mzR
lists: PAPi
lists: pNovo+
lists: COV2HTML
lists: CODEHOP
lists: CNVassoc
lists: PRO
lists: Hollywood
lists: StreamingTrim
lists: pLabel
lists: HomoloGene
lists: aCGH.Spline
lists: pBuild
lists: Time-series RNA-seq Analysis Package
lists: CGHnormaliter
lists: Type-III-Secretion-System related database
lists: SMRT-Analysis
lists: CPTRA
lists: mtDB - Human Mitochondrial Genome Database
lists: AltAnalyze - Alternative Splicing Analysis Tool
lists: Chimera
lists: IMG System
lists: Babelomics
lists: MRFSEQ
lists: ms lims
lists: ChIPMonk
lists: Gel2DE
lists: UCSF Spot
lists: ProRata
lists: R-pbutils
lists: MITOMAP - A human mitochondrial genome database
lists: NOISeq
lists: Dpos
lists: Gene Weaver
lists: pFind
lists: Canadian College of Medical Geneticists
lists: BRAIN
lists: Isopat
lists: R-pbh5
lists: pbh5tools
lists: SMRT View
lists: JASPAR
lists: enviPat
lists: bwtool
lists: MoSDi
lists: tweeDEseq
lists: DIALIGN
lists: PacBioToCA
lists: DiNuP
lists: Gutentag
lists: Parametric Time Warping
lists: SurvComp
lists: SASqPCR
lists: enviPick
lists: GeneFisher
lists: Triplex
lists: MPprimer
lists: MIPE
lists: MFEprimer
lists: DnaSP
lists: FAS-DPD
lists: SURPI
lists: MAPPER - Multi-genome Analysis of Positions and Patterns of Elements of Regulation
lists: MachiBase
lists: Primer3Plus
lists: e-PCR
lists: NeuroMab
lists: In-Silico PCR
lists: JETTA
lists: MapViewer
lists: Primer-BLAST
lists: WormBase
lists: eQtlBma
lists: JuncBASE
lists: MethDB
lists: pairheatmap
lists: MISO
lists: HYDEN
lists: mrsFAST
lists: PredictNLS
lists: mrCaNaVaR
lists: NovelSeq
lists: PlantLoc
lists: Primer3
lists: FastSNP
lists: Proteome Analyst Specialized Subcellular Localization Server
lists: NYCE
lists: GeneScissors
lists: ngLOC
lists: MultiLoc
lists: GeneCruiser
lists: MetaLocGramN
lists: FastPCR
lists: miRNAMap
lists: HUPO Proteomics Standards Initiative
lists: SaskPrimerFS
lists: rDiff
lists: Database of Interacting Proteins (DIP)
lists: Solas
lists: Pipeliner
lists: iLoc-Animal
lists: QDNAseq
lists: ResponseNet
lists: SynSysNet
lists: XORRO
lists: Stacks
lists: SECISearch3 and Seblastian
lists: SALT
lists: HyperTree
lists: Primer Designer
lists: r3Cseq
lists: Gene Set Enrichment Analysis
lists: Piano
lists: PHAST
lists: NHGRI: Establishing a Central Resource of Data from Genome Sequencing Projects
lists: NGSadmix
lists: Gemi
lists: Talking Glossary of Genetic Terms
lists: PathGuide: the pathway resource list
lists: SplicingCompass
lists: RNAhybrid
lists: LUMPY
lists: Geospiza
lists: SpliCQ
lists: ORFprimer
lists: JCVI Primer Designer
lists: Assembly Based ReAligner
lists: deFuse
lists: Xenbase
lists: PoPoolation2
lists: OmicCircos
lists: Amplicon
lists: PrimerSeq
lists: Genedata Expressionist
lists: biobambam
lists: RCircos
lists: ggbio
lists: DAFGA
lists: MIPgen
lists: PicTar
lists: BlockClust
lists: PIRSF
lists: miR-PREFeR
lists: MouseNET
lists: PlantProm DB
lists: MAGI
lists: PLANTTFDB
lists: ALDEx2
lists: qBasePLUS
lists: RefGenes
lists: HTqPCR
lists: BestKeeper
lists: NanoStringNorm
lists: NormFinder
lists: NormqPCR
lists: PolymiRTS
lists: PPDB: Plant Promoter Database
lists: ddCt
lists: GEOSS
lists: PReMod
lists: EasyqpcR
lists: NanoStriDE
lists: GBSA
lists: LaSSO
lists: NAPPA
lists: nSolver Analysis Software
lists: MAGENTA
lists: MetABEL
lists: ProNIT
lists: genomation
lists: metagen
lists: BMIQ
lists: FadE
lists: metaphor
lists: SWAN
lists: PROSITE
lists: Parseq
lists: qPrimerDepot
lists: Bpipe
lists: Nestly
lists: Snakemake
lists: SNAPE-pooled
lists: NGSANE
lists: jmzTab
lists: JISTIC
lists: Savant
lists: MetaSKAT
lists: Human Variome Project
lists: PoPoolation
lists: RefSeq
lists: MultiPhen
lists: RegulonDB
lists: MF-GE
lists: PheWAS R Package
lists: EBSeq
lists: MSMS
lists: RAREMETAL
lists: RevMan
lists: GEPAT
lists: Polyester
lists: SET
lists: J-Express
lists: UEA sRNA toolkit
lists: Osprey
lists: RINS
lists: PyroBayes
lists: PEAR
lists: JATAC
lists: SeqExpress
lists: Quantitative Enrichment of Sequence Tags
lists: Pash 3.0
lists: Factorbook
lists: FlyTF.org
lists: My Cancer Genome
lists: Pathosystems Resource Integration Center
lists: MSG
lists: InsertionMapper
lists: PubMed Central
lists: GeneCommittee
lists: INMEX
lists: TagDust
lists: PASS-bis
lists: HLASeq
lists: FIDEA
lists: EGAPP
lists: DCTD
lists: Hapmix
lists: BamView
lists: PerM
lists: Mercury
lists: CDP
lists: CB-Commander
lists: BSRD
lists: DER Finder
lists: Artemis: Genome Browser and Annotation Tool
lists: PeaKDEck
lists: PubChem
lists: Babel
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lists: Vascular Modeling Toolkit
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lists: BRAKER
lists: Bustools
lists: Centrifuge Classifier
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lists: Examl
lists: Falcon
lists: Fastaq
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lists: mosdepth
lists: MUMmer
lists: OptiType
lists: Phyutility
lists: Porechop
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lists: Racon
lists: Phangorn
lists: pheatmap
lists: Recognition of Errors in Assemblies using Paired Reads
lists: RELION
lists: Roary
lists: Salmon
lists: Scoary
lists: University of Zurich SCRM - Cell-and Tissue Biobank
lists: Seqtk
lists: Short Read Sequence Typing for Bacterial Pathogens
lists: Vmatch
lists: ABACAS
lists: AceDB
lists: tRNAscan-SE
lists: Antibody Resource Page
is related to: COnsensus-DEgenerate Hybride Oligonucleotide Primers
is related to: Classifier for Metagenomic Sequences
is related to: Pedigree-Draw
is related to: CAZy- Carbohydrate Active Enzyme
is related to: PolyPhen: Polymorphism Phenotyping
is related to: BioRAT
is related to: dChip Software
is related to: Rat Genome Database (RGD)
is related to: Comparative Toxicogenomics Database (CTD)
is related to: VISTA Enhancer Browser
is related to: affy
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PMID:25024350 |
THIS RESOURCE IS NO LONGER IN SERVICE |
|
nlx_155571, r3d100012426 |
https://doi.org/10.17616/R3PJ3N |
http://omictools.com/ |
|
SCR_002250 |
genOMIC tools |
2026-07-28 09:40:23 |
34 |
Genetic Analysis Software
Resource Report
Resource Website
1+ mentions
|
Genetic Analysis Software (RRID:SCR_013155)
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GAS
|
data set, data or information resource, catalog, database, software resource
|
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 4th,2023. Listing of computer software for the gene mapping community on the following topics: genetic linkage analysis for human pedigree data, QTL analysis for animal/plant breeding data, genetic marker ordering, genetic association analysis, haplotype construction, pedigree drawing, and population genetics. The inclusion of a program should not be interpreted as an endorsement to that program from us. In the last few years, new technology produces new types of genetic data, and the scope of genetic analyses change dramatically. It is no longer obvious whether a program should be included or excluded from this list. Topics such as next-generation-sequencing (NGS), gene expression, genomics annotation, etc. can all be relevant to a genetic study, yet be specialized topics by themselves. Though programs on variance calling from NSG can be in, those can sequence alignment might be out; programs on eQTL can be in, those on differential expression might be out. This page was created by Dr. Wentian Li, when he was at Columbia University (1995-1996). It was later moved to Rockefeller University (1996-2002), and now takes its new home at North Shore LIJ Research Institute (2002-now). The present copy is maintained by Jurg Ott as a single file. More than 240 programs have been listed by December 2004, more than 350 programs by August 2005, close to 400 programs by December 2006, and close to 480 programs by November 2008, and over 600 programs by October 2012. A version of the searchable database was developed by Zhiliang Hu of Iowa State University, and a recent round of updating was assisted by Wei JIANG of Harbin Medical School. Some earlier software can be downloaded from EBI: ftp://ftp.ebi.ac.uk/pub/software/linkage_and_mapping/ (Linkage and Mapping Software Repository), and http://genamics.com/software/index.htm may contain archived copy of some programs.
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gene mapping, gene, genetic, genomic, model, modeling, software program, genetic linkage analysis, qtl analysis, genetic marker order, genetic association analysis, haplotype construction, pedigree drawing, population genetics
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is used by: NIF Data Federation
lists: EM-DECODER
lists: ENTROPY BLOCKER
lists: SOAP
lists: ADEGENET
lists: 2LD
lists: SQTL
lists: POLYMORPHISM
lists: EDAC
lists: FEST
lists: GENEHUNTER SAD
lists: COMDS
lists: CHAPLIN
lists: CRIMAP
lists: DCHIP LINKAGE
lists: FLOSS
lists: HAP 1
lists: HAPSCOPE
lists: LDB/LDB+
lists: LOCUSMAP
lists: MRH
lists: PEDIGREE-VISUALIZER
lists: PEDPHASE
lists: QTL CAFE
lists: RHMAPPER
lists: R/GC, R/GCF
lists: R/GWAPOWER
lists: R/WEIGHTED FDR
lists: SIMM
lists: SOLAR
lists: TDTHAP
lists: HWESTRATA
lists: TDT-PC
lists: EQTL EXPLORER
lists: GAS2
lists: LDMET
lists: LAMBDAA
lists: EIGENSOFT/EIGENSTRAT
lists: Happy
lists: LAMP
lists: CLUSTAG
lists: OSA
lists: SIMIBD
lists: SNPSTATS
lists: Haploview
lists: QGene
lists: PAWE-3D
lists: MILD
lists: PEDPLOT
lists: GS-EM
lists: PEDSCRIPT
lists: Multipoint Identical-by-descent Method
lists: PARENTE
lists: Integrated Software
lists: PEDRAW/WPEDRAW
lists: POPDIST
lists: TDTASP
lists: TDTPOWER
lists: TDT/S-TDT
lists: HAPLOBLOCKFINDER
lists: HAPMIXMAP
lists: Genotype-IBD Sharing Test
lists: LDGROUP
lists: LDHAT
lists: LDMAP
lists: LDHEATMAP
lists: LDSELECT
lists: LINKAGE
lists: LDSUPPORT
lists: FASTLINK
lists: LINKAGE - CEPH
lists: LSP
lists: Whap
lists: TREESCAN
lists: Graphical Overview of Linkage Disequilibrium
lists: MAIA
lists: MULTIMAP
lists: R/ADEGENET
lists: R/ENTROPY BLOCKER
lists: BEAM
lists: BMAPBUILDER
lists: POPGEN
lists: RTDT
lists: R/SPECTRAL-GEM
lists: R/STEPWISE
lists: HAPLOCLUSTERS
lists: TKMAP
lists: CLUMP
lists: FAMOZ
lists: INTEGRAYEDMAP
lists: SIBMED
lists: POOLSCORE
lists: LDA
lists: LAPSTRUCT
lists: BETA
lists: ALTree
lists: TRANSMIT
lists: ETDT
lists: R/TDTHAP
lists: RVTESTS
lists: S
lists: ET-TDT
lists: ILR
lists: MAPCREATOR
lists: MAPMAKER/SIBS
lists: MAP MANAGER QT
lists: MGA-MAPF2
lists: Pedigree-Draw
lists: FASTMAP (1)
lists: ASPEX
lists: PEDJAVA
lists: PEDPEEL
lists: SIMCOAL
lists: SNPHAP
lists: SNPHARVESTER
lists: SNP-HWE
lists: TAGSNP
lists: FASTMAP (2)
lists: FASTSLINK
lists: GASP
lists: GENOGRAM-MAKER
lists: GENEHUNTER++SAD
lists: GENEPI.JAR
lists: BDGEN
lists: TLINKAGE
lists: GENOME
lists: EASYPOP
lists: GENOMESIMLA
lists: TRAP
lists: CARTHAGENE
lists: ACT
lists: ADMIXMAP
lists: 2DMAP
lists: ALBERT
lists: 2SNP
lists: AGEINF
lists: ALLASS
lists: PEDIGREEQUERY
lists: PATH
lists: MULTIQTL
lists: SPERMSEG
lists: FASTER
lists: Platypus
lists: KIN
lists: SNP ASSISTANT
lists: GRONLOD
lists: COMBIN
lists: ARLEQUIN
lists: SEGPATH
lists: JENTI
lists: SCOUT
lists: HAPLOREC
lists: UNPHASED
lists: POWER
lists: HAPLO 1
lists: HAPLO 2
lists: CHIP2SPELL
lists: MAP MANAGER QTX
lists: G-MENDEL
lists: ASSOCIATIONVIEWER
lists: WHICHRUN
lists: GENECLASS
lists: MAREYMAP
lists: HELIXTREE
lists: SVCC
lists: GENEHUNTER-MODSCORE
lists: FAMHAP
lists: BAMA
lists: WEBQTL
lists: HAPLOVISUAL
lists: CASPAR
lists: GC/GCF
lists: MIXSCORE
lists: POWQ
lists: QTLNetwork
lists: SIMULAPLOT
lists: SQTDT/SPDT
lists: FESTA
lists: BOTTLENECK
lists: PAP
lists: QUANTO
lists: R/QTL
lists: SNPEM
lists: GENEPOOL
lists: EPISTACY
lists: VITESSE
lists: LEA
lists: DMAP
lists: MOSCPHASER
lists: UMAKE
lists: TDT-AE
lists: HAPLOWSER
lists: STEPC
lists: RECORD
lists: QUTIE
lists: R/COMPOSITELD
lists: FINESSE
lists: R/EHP
lists: R/HCLUST
lists: STEPWISE
lists: genehunter-imprinting
lists: PBAT
lists: R/BARS
lists: HARDY
lists: R/ARP.GEE
lists: R/COVIBD
lists: STRAT
lists: TREELD
lists: TUNA
lists: SIBSIM
lists: IGG
lists: ALLELIX
lists: ALLEGRO
lists: ALOHOMORA
lists: ALP
lists: AMELIA
lists: ANALYZE
lists: ANCESTRY
lists: APE
lists: BARS
lists: APL-OSA
lists: APM
lists: ARIEL
lists: GENOMIZER
lists: ASP/ASPSHARE
lists: BIMBAM
lists: BIOIDE
lists: BIOLAD-DB
lists: BLADE
lists: BLOCK
lists: BOOLD
lists: BOOSTRAPPER
lists: BPPH
lists: BQTL
lists: DNABASER
lists: Calculator for Association with Two Stage design
lists: CC-QLS
lists: CCRAVAT
lists: CCREL
lists: CEPH2CRI
lists: CEPH2MAP
lists: EVOKER
lists: CFC
lists: CHECKHET
lists: MATLINK
lists: CHECKMATRIX
lists: CHIAMO
lists: CHROMOSCAN
lists: CHROMOSEG
lists: COPE
lists: HCLUST
lists: COVIBD
lists: CRIMAP-PVM
lists: CROSSFIND
lists: DGENE
lists: EHPLUS
lists: DHSMAP
lists: DISENTANGLER
lists: MAKEPED
lists: DOLINK
lists: DPPH
lists: GREGOR
lists: EAGLET
lists: EASYLINKAGE/EASYLINKAGE-PLUS
lists: EH
lists: EHAP
lists: EHP
lists: EMLD
lists: EPDT
lists: ERPA
lists: EXOMEPICKS
lists: R/META
lists: FASTEHPLUS
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lists: FBAT
lists: FINETTI
lists: FIRSTORD
lists: FISHER
lists: GAIA
lists: GAP
lists: GAS
lists: GCHAP
lists: GDA
lists: GEMS
lists: GENECOUNTING
lists: GENEFINDER
lists: GENEHUNTER
lists: GENEHUNTER-IMPRINTING
lists: GENEHUNTER-PLUS
lists: GENEPOP
lists: GENERECON
lists: GENESPRING GT
lists: GENIE
lists: GENETIC POWER CALCULATOR
lists: GENETSIM
lists: GENOOM
lists: GENEVAR
lists: GENEWEAVER
lists: GENOCHECK
lists: GENOPROOF
lists: GENTOOLS
lists: GEST
lists: GEVALT
lists: GGT
lists: GHOST
lists: GLIDERS
lists: GLUE
lists: GMA
lists: GMCHECK
lists: GSMA
lists: GTOOL
lists: GWAPOWER
lists: HAP 2
lists: HAPAR
lists: HAPASSOC
lists: HAPBLOCK
lists: HAPGEN
lists: HAPINFERX
lists: HAPLOBLOCK
lists: HAPLOBUILD
lists: HAPLOPOOL
lists: HAPLORE
lists: HAPLO.STAT
lists: HAPLOT
lists: HAPLOTTER
lists: TWOLOC
lists: HAPLOTYPE ESTIMATION
lists: HAPLOTYPER
lists: HAPMINER
lists: HAP-SAMPLE
lists: HAPSIMU
lists: HIT
lists: HOMOG/HOMOGM
lists: HOTSPOTTER
lists: HPLUS
lists: HS-TDT
lists: HTR
lists: HTSNPER
lists: MDR-PDT
lists: INTERSNP
lists: IMPUTE
lists: NOPAR
lists: JLIN
lists: JOINMAP
lists: JPSGCS
lists: J/QTL
lists: KING
lists: LAMARC
lists: LINKAGE-IMPRINT
lists: LINKBASE
lists: LIPED
lists: LNKTOCRI
lists: LOCUSZOOM
lists: LOGINSERM ESTIHAPLO
lists: LOH-LINKAGE
lists: LOKI
lists: LOT
lists: L-POP
lists: LRP
lists: LRTAE
lists: LTSOFT
lists: MADMAPPER
lists: Marker And Gene Interpolation and Correlation
lists: MALDSOFT
lists: MAMA
lists: MANTEL-STRUCT
lists: MAP/MAP+/MAP+H/MAP2000
lists: MAPCHART
lists: MIDAS
lists: MAPDISTO
lists: MAPDRAW
lists: MAPINSPECT
lists: MAPL
lists: MARGARITA
lists: MDBLOCKS
lists: MAPMAKER/EXP
lists: MAPMAKER/HOMOZ
lists: MAPMAKER/QTL
lists: MAPQTL
lists: MCQTL
lists: MEGA2
lists: MEGASNPHUNTER
lists: MENDEL
lists: MERLIN
lists: MFLINK
lists: MINIMAC
lists: MINSAGE
lists: MITPENE
lists: MKGST
lists: MMDRAWER
lists: MLBGH
lists: MLD
lists: MLR-TAGGING
lists: PEDMANAGER
lists: SAGE
lists: MPDA
lists: MULTIDISEQ
lists: MULTIMAPPER
lists: MULTIMAPPER/OUTBRED
lists: MULTIPOPTAGSELECT
lists: MULTISIM
lists: MUTAGENESYS
lists: NOCOM
lists: NUCULAR
lists: ONEMAP
lists: OSIRIS
lists: P ACT
lists: PASS PEDIGREE
lists: PAWE
lists: PDA
lists: PDPSYS
lists: PDT
lists: PED
lists: PEDAGREE
lists: PEDCHECK
lists: PEDSTATS
lists: PEDSYS
lists: PEDVIZAPI
lists: PEER
lists: PHASE
lists: PLABSIM
lists: PL-EM
lists: POINTER
lists: POOL STR
lists: POWERMARKER
lists: POWERTRIM
lists: POWTEST
lists: PREPLINK
lists: PREST
lists: PROBMAX
lists: PROC QTL
lists: PROFILER
lists: PRT
lists: PSAT
lists: SAS/GENETICS
lists: PSEUDO
lists: PSEUDOMARKER
lists: PSEUDOMARKER.M
lists: R/LDHEATMAP
lists: QTL-ALL
lists: QTL Cartographer
lists: QTL EXPRESS
lists: QU-GENE
lists: RISCALW
lists: RC-TDT
lists: REAPER
lists: RELATIVE
lists: RELATIVEFINDER
lists: RELCHECK
lists: RELPAIR
lists: RELTYPE
lists: RHMAP
lists: ROMPREV
lists: ROSATTA SYLLEGO SYSTEM
lists: R/GAP
lists: R/HAPASSOC
lists: R/IBDREG
lists: R/LAPSTRUCT
lists: R/LDGROUP
lists: R/LUCA
lists: R/METASIM
lists: R/ONEMAP
lists: R/PIAGE
lists: R/POOLSCORE
lists: R/POPGEN
lists: R/QTLBIM
lists: R/SNP.PLOTTER
lists: SDMINP
lists: SELSIM
lists: SEQUENCE LD/SEQUENCE LDHOT
lists: SIBERROR
lists: SIBLINK
lists: SIB-PAIR
lists: SILCLOD
lists: SIMLA
lists: SNP CHART
lists: SIMLINK
lists: SIMPED
lists: SIMPLE
lists: SIMULA
lists: SIMULATE
lists: SIMUPOP
lists: SIMWALK
lists: START
lists: SKAT
lists: SLINK
lists: SMOOTH
lists: Suite of Nucleotide Analysis Programs
lists: SNAP 3
lists: SNPALYZE
lists: SNPFILE
lists: SNPLINK
lists: SNPP
lists: SNP.PLOTTER
lists: SNPTEST
lists: SPAM
lists: SPECTRAL-GEM
lists: SPERM
lists: SPIP
lists: SPLAT
lists: TAGSTER
lists: SPLINK
lists: SSAHASNP
lists: SUMSTAT
lists: SUP
lists: SWEEP
lists: TAGGER
lists: TFPGA
lists: TREESELECT
lists: UNKNOWN
lists: UTIL
lists: WHAIT
lists: ZAPLO
lists: HAPBLOCK 2
lists: PLABQTL
lists: TASSEL
lists: MCLEEPS
lists: SASGENE
lists: PANGAEA
lists: TOMCAT
lists: SCORE-SEQ
lists: SASQUANT
lists: QMSIM
lists: PIAGE
lists: PEDPACK
lists: INSEGT
lists: IBDREG
lists: GLFSINGLE/GLFTRIO/GLFMULTIPLES
lists: GGSD
lists: ECLIPSE
lists: CHROMSCAN
lists: COMPOSITELD
lists: BOOST
lists: ARP.GEE
lists: BOREL
lists: GASSOC
lists: MENDELSOFT
lists: PLINK/SEQ
lists: POLYPHEN
lists: SPREG
lists: MOLKIN
lists: PRESTO: Genetic Association Analysis Software
lists: ENDOG
lists: BEAGLECALL
lists: GWASELECT
lists: HEGESMA
lists: SNIPPEEP
lists: TAGIMPUTE
lists: SNPMSTAT
lists: SNP HITLINK
lists: MECPM
lists: R/FEST
lists: MAOS
lists: SUPERLINK
lists: PEDFIDDLER
lists: VG
lists: HAPSTAT
lists: QTDT
lists: GRIDQTL
lists: VH
lists: R/QTLDESIGN
lists: PyPop
lists: ANTMAP
lists: MDR
lists: WEIGHTED FDR
lists: THESIAS
lists: DMLE
lists: SGS
lists: BAYESFST
lists: HWMET
lists: GRR
lists: AUTOSCAN
lists: TRIMHAP
lists: ILLUMINUS
lists: PELICAN
lists: HAPLOPAINTER
lists: HOMOZYGOSITYMAPPER
lists: GERMLINE
lists: PLINK
lists: MACH 1.0
lists: BEAGLE
lists: BIRDSUITE
lists: BREAKDANCER
lists: CAROL
lists: CASAVA
lists: CYRILLIC
lists: DINDEL
lists: GenABEL
lists: GATK
lists: PEDIGRAPH
lists: MADELINE
lists: METAL
lists: OLORIN
lists: PEDHUNTER
lists: POLYMUTT
lists: SAMTOOLS
lists: SNAP - SNP Annotation and Proxy Search
lists: STRUCTURE
lists: SVA
lists: SYZYGY
lists: VAAST
lists: Hapmix
lists: Ancestrymap
lists: Hmmer
lists: PROGENY
lists: VarScan
lists: MORGAN
lists: CMAP
lists: SIMHAP
lists: SIFT
lists: ANNOVAR
lists: Body Mass Index Calculator
lists: PolyPhen: Polymorphism Phenotyping
has parent organization: Feinstein Institute for Medical Research
has parent organization: Iowa State University; Iowa; USA
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http://lab.rockefeller.edu/ott/geneticsoftware |
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SCR_013155 |
An Alphabetic List of Genetic Analysis Software |
2026-07-28 09:43:13 |
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