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URL: http://compsysbio.achs.virginia.edu/tobfac/
Proper Citation: TOBFAC (RRID:SCR_005423)
Description: Database of transcription factor sequences from a single plant species (over 2,500 genes). It is possible to search: # 1,159,022 gene-space sequence reads (GSRs) obtained by methylation filtering from the Tobacco Genome Initiative (TGI). # The DFCI Tobacco Gene Index (Release 4.0 July 5, 2008) that contains 163,524 tobacco EST sequences and 2,288 expressed transcripts (ETs). # The complete TOBFAC database of tobacco transcription factors. It is also possible to search multiple libraries in a single search. They have incorporated tools for downloading all of the sequences from the blast results and also a contig tool to assemble any or all of the resulting sequences. They are also improving the TOBFAC sequences by extending the original contigs using a contig extension tool designed by Ryan Thompson. This has allowed them to refine the predicted genes. These will be updated on a gene family basis as the improved data become available.
Abbreviations: TOBFAC
Synonyms: TOBFAC: The database of tobacco transcription factors
Resource Type: database, data or information resource
Defining Citation: PMID:18221524
Keywords: transcription factor
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant 2U24DK097771-09.
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