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URL: https://sanger-pathogens.github.io/gubbins/
Proper Citation: Gubbins (RRID:SCR_016131)
Description: Software application as an algorithm that iteratively identifies loci containing elevated densities of base substitutions while concurrently constructing a phylogeny based on the putative point mutations outside of these regions. It is used for phylogenetic analysis of genome sequences and generating highly accurate reconstructions under realistic models of short-term bacterial evolution., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
Synonyms: Gubbins: Genealogies Unbiased By recomBinations In Nucleotide Sequences
Resource Type: data analysis software, data processing software, sequence analysis software, software application, software resource
Defining Citation: PMID:25414349
Keywords: rapid, phylogenetic, analysis, large, sample, recombinant, bacteria, whole, genome, sequence, loci, elevated, densities, base, substitiution, mutatiion, outside, region, evolution, alignment
Funding: Wellcome Trust 098051
Availability: THIS RESOURCE IS NO LONGER IN SERVICE
Resource Name: Gubbins
Resource ID: SCR_016131
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
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