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URL: https://github.com/AdmiralenOla/Scoary
Proper Citation: Scoary (RRID:SCR_021087)
Description: Software tool that scores components of pan genome for associations to observed phenotypic traits while accounting for population stratification, with minimal assumptions about evolutionary processes.Designed to take gene presence absence.csv file from Roary as well as traits file created by user and calculate associations between all genes in accessory genome and traits. It reports list of genes sorted by strength of association per trait.
Resource Type: software application, software resource, data analytics software
Defining Citation: PMID:27887642
Keywords: Gene associations calculation, accessory genome, phenotypic traits, gene presence, gene absence, gene sort, association strenght
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