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URL: http://bioinf.scmb.uq.edu.au/STRViper/
Proper Citation: STRViper (RRID:SCR_001179)
Description: Software tool for detection of short tandem repeat (STR) variations from paired-end next generation sequencing data. It makes variant calls based on deviations in sequence fragment sizes, allowing the analysis of repeats of size up to fragment length. This stratergy also helps avoiding false calls resulting from errors arised from sequencing of repeat DNA.
Abbreviations: STRViper
Synonyms: Short Tandem Repeat Variation Indentification from Paired-End Reads, STRViper: Short Tandem Repeat Variation Indentification from Paired-End Reads
Resource Type: software resource
Defining Citation: PMID:24353318
Keywords: next-generation sequencing, short tandem repeat variation, short tandem repeat, java, unix, linux, macos, paired-end read
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant 2U24DK097771-09.
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