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URL: https://cab.spbu.ru/software/spades/
Proper Citation: SPAdes (RRID:SCR_000131)
Description: Software package for assembling single cell genomes and mini metagenomes. Uses short read sets as input. Used for genomes of uncultivatable bacteria that vastly exceeds what may be obtained via traditional metagenomics studies. Works with Illumina or IonTorrent reads and can provide hybrid assemblies using PacBio, Oxford Nanopore and Sanger reads. Intended for small genomes like bacterial or fungal.
Abbreviations: SPAdes
Synonyms: SPAdes Genome Assembler
Resource Type: software resource, software toolkit
Defining Citation: PMID:24093227, PMID:22506599, DOI:10.1089/cmb.2012.0021
Keywords: assembler, single, cell, small, genome, short, read, data
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Saint Petersburg Academic University; Saint Petersburg; Russia |
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