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URL: http://www.sanger.ac.uk/science/tools/dindel
Proper Citation: DINDEL (RRID:SCR_001827)
Description: THIS RESOURCE IS NO LONGER IN SERVICE. Documented on March 7,2024. Software program for calling small indels from short-read sequence data ("next generation sequence data"). It is currently designed to handle only Illumina data. Dindel takes BAM files with mapped Illumina read data and enables researchers to detect small indels and produce a VCF file of all the variant calls. It has been written in C++ and can be used on Linux-based and Mac computers (it has not been tested on Windows operating systems).
Abbreviations: Dindel
Synonyms: Dindel: Accurate indel calls from short-read data
Resource Type: software resource, software application
Defining Citation: PMID:20980555, DOI:10.1101/gr.112326.110
Keywords: indel, short-read, next generation sequence, illumina, gene, genetic, genomic, c++, linux, macos, bio.tools
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant 2U24DK097771-09.
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