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URL: http://code.google.com/p/crop-tingchenlab/
Proper Citation: CROP (RRID:SCR_006916)
Description: A clustering tool designed mainly for Metagenomics studies, which clusters 16S rRNA sequences into Operational Taxonomic Units (OTU). By using a Gaussian Mixture model, CROP can automatically determine the best clustering result for 16S rRNA sequences at different phylogenetic levels without setting a hard cutoff threshold as hierarchical clustering does. Yet, at the same time, it is able to manage large datasets and to overcome sequencing errors.
Abbreviations: CROP
Synonyms: CROP: Clustering 16S rRNA For OTU Prediction
Resource Type: software resource
Defining Citation: PMID:21233169
Keywords: cluster, 16s rrna, otu, gaussian mixture, bayesian, mcmc, metagenomics
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