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URL: https://code.google.com/p/popoolationte/
Proper Citation: PoPoolation TE (RRID:SCR_005131)
Description: A quick and simple pipeline for the analysis of transposable element (TE) insertions in (natural) populations using next generation sequencing. It calculates TE insertion frequencies for TEs that are present in the reference genome as well as for novel TE insertions. PoPoolation TE requires paired-end reads from a pooled population, a reference sequence and transposable element sequences (fasta-file).
Abbreviations: PoPoolation TE
Resource Type: software resource
Defining Citation: PMID:22291611
Keywords: next generation sequencing, transposable element, insertion frequency, genomics, population genetics, illumina
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant 2U24DK097771-09.
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