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URL: http://tron-mainz.de/tron-facilities/computational-medicine/seq2hla/
Proper Citation: seq2HLA (RRID:SCR_001199)
Description: Software for obtaining an individualXs HLA class I and II type and expression using standard NGS (Next-generation sequencing) RNA-Seq data. It comprises mapping RNA-Seq reads against a reference database of HLA alleles, determining and reporting HLA type, confidence score and locus-specific expression level.
Abbreviations: seq2HLA
Synonyms: seq2HLA - HLA typing from RNA-Seq sequence reads
Resource Type: software resource
Defining Citation: PMID:23259685
Keywords: illumina, next-generation sequencing, rna-seq, hla, hla allele, hla typing
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Johannes Gutenberg University Mainz; Rhineland-Palatinate; Germany |
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