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URL: http://code.google.com/p/gasv/
Proper Citation: GASV (RRID:SCR_000061)
Description: Software tool for identifying structural variants (SVs) from paired-end sequencing data.GASV distribution includes three components that are typically run in succession: the BAM file of unique paired-read mappings is processed; structural variants are identified by clustering discordant fragments; and a probabilistic algorithm improves the specificity of GASV predictions.
Abbreviations: GASV
Synonyms: Geometric Analysis of Structural Variants
Resource Type: data analysis software, data processing software, software application, software resource
Defining Citation: PMID:19477992
Keywords: paired-end sequencing data, structural variant, probabilistic algorithm, discordant fragment, bio.tools
Funding: ADVANCE Program at Brown University ; Burroughs Wellcome Fund ; Department of Defense Breast Cancer Research ; NSF 0548311
Availability: Free, Available for download, Freely available
Resource Name: GASV
Resource ID: SCR_000061
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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