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Resource Name Sort Ascending Sort Descending	Proper Citation Sort Ascending Sort Descending	Abbreviations Sort Ascending Sort Descending	Resource Type Sort Ascending Sort Descending	Description	Keywords Sort Ascending Sort Descending	Resource Relationships Sort Ascending Sort Descending	Funding Sort Ascending Sort Descending	Defining Citation Sort Ascending Sort Descending	Availability	Alternate IDs	Alternate URLs	Old URLs	Resource ID	Synonyms Sort Ascending Sort Descending	Record Last Update Sort Ascending Sort Descending	Mentions Count Sort Ascending Sort Descending
NCBI Epigenomics Resource Report Resource Website 10000+ mentions	NCBI Epigenomics (RRID:SCR_006151)	Epigenomics	data or information resource, database	THIS RESOURCE IS NO LONGER IN SERVICE, documented on January 19, 2022.	genome-wide map, dna, histone, modification, epigenomic, genome, gold standard, gene mapping, gene amplification, genetic code, gene library, dna fingerprinting, chromatin, histone modification, dna methylation, dnaase footprinting, genome wide association study, gene expression	is listed by: re3data.org is listed by: OMICtools is related to: Roadmap Epigenomics Project has parent organization: NCBI			THIS RESOURCE IS NO LONGER IN SERVICE	nlx_151643, OMICS_01848, r3d100010782	https://doi.org/10.17616/R34K7J	http://www.ncbi.nlm.nih.gov/epigenomics	SCR_006151	NCBI Epigenomic Gateway, National Center for Biotechnology Information Epigenomics, NCBI Epigenomic Hub	2026-08-15 11:28:49	14631
OMICtools Resource Report Resource Website 10+ mentions	OMICtools (RRID:SCR_002250)	OMICtools	data or information resource, catalog, database	THIS RESOURCE IS NO LONGER IN SERVICE. Documented Jul 19, 2024. Metadatabase manually curated that provides web accessible tools related to genomics, transcriptomics, proteomics and metabolomics. Used as informative directory for multi-omic data analysis.	metadatabase, manually, curated, tool, genomic, transcriptomic, proteomic, metabolomic, data	lists: ncdfFlow lists: BSmooth-align lists: 4Peaks lists: CSDeconv lists: Tablet lists: GenomicRanges lists: SNPSVM lists: ReadqPCR lists: SP-Designer lists: CorMut lists: ChIPmeta lists: FACS lists: metaSeq lists: Dissect lists: Fusion Analyser lists: FusionCatcher lists: GASV lists: GHOSTM lists: nFuse lists: PD5 lists: Patchwork lists: QuadGT lists: VariantAnnotation lists: ReQON lists: SnowsShoes-FTD lists: timecourse lists: SOAPfuse lists: SOAPfusion lists: pFind Studio: pLink lists: Spotfinder lists: AbMining ToolBox lists: SNAVI lists: MetAssign lists: JChemPaint lists: siRNArules lists: AutoPrime lists: RmiR.Hs.miRNA lists: MysiRNA-designer lists: TACOA lists: Treephyler lists: MedGen lists: D-Tailor lists: BioLemmatizer lists: AffyRNADegradation lists: Orphelia lists: ArrayExpress (R) lists: Parallel-META lists: CovalentDock Cloud lists: DOCK lists: exomeSuite lists: SPAdes lists: Sequence Read Format lists: FastQ Screen lists: GEOquery lists: Bovine Genome Database lists: GISTIC lists: DESeq lists: Postgwas lists: BLASTPLOT lists: miRanalyzer lists: Magnolya lists: GMATo lists: GemSIM lists: Grinder lists: Illuminate lists: RNAcontext lists: MIMOSA lists: F2DockClient lists: FlexX lists: Glide lists: GOLD lists: Molegro Virtual Docker lists: Sanjeevini lists: SODOCK lists: HEM lists: Surflex-Dock lists: Cascleave lists: MetaDE lists: Cell Death Proteomics Database lists: GPS-Calpain Cleavage Detector lists: GraBCas lists: c3net lists: Context Likelihood of Relatedness lists: GENIE3 lists: Inferelator lists: MODENT - A Tool For Reconstructing Gene Regulatory Networks lists: MRNet lists: UnSplicer lists: Duplicate reads removal lists: PEpiD lists: TAPIR: target prediction for plant microRNAs lists: iOMICS lists: Megraft lists: VARiD lists: Cistrome lists: PSGInfer lists: MochiView lists: RSEM lists: RNAmotifs lists: M(at)CBETH lists: MS-Spectre lists: Quant lists: RNASeqReadSimulator lists: iFad lists: GramCluster lists: GProX lists: PeptideProphet lists: CNTools lists: Lasergene's SeqMan Pro lists: ProteinProphet lists: OMSSAPercolator lists: Flicker lists: cn.FARMS lists: LIPAGE lists: DNASTAR: Lasergene Core Suite lists: Clonality lists: oneClickCGH lists: CGH Fusion lists: Screensaver lists: fqzcomp lists: ArrayPlex lists: MiRdup lists: MeQA lists: Methyl-Analyzer lists: Annotare lists: CpGassoc lists: Koadarray lists: RADtools lists: rtd lists: ABrowse lists: GPViz lists: cuteNMR lists: Jnomics lists: JMolDraw lists: CGAP-Align lists: ARACHNE lists: Kinannote lists: CLC Main Workbench lists: ParseCNV lists: TAPS lists: PyroHMMsnp lists: TransView lists: pvac lists: riboPicker lists: NucleoFinder lists: bzip2 lists: GENSENG lists: AS-Peak lists: is-rSNP lists: ILLUMINUS lists: QUALIFIER lists: FunctSNP lists: Micro-Analyzer lists: flowStats lists: flowPeaks lists: metaMA lists: rTANDEM lists: flowFlowJo lists: TargetCaller lists: PSCBS lists: iASeq lists: d2-tools lists: PEPPER lists: OLINgui lists: TNO-DECO lists: SigFuge lists: stsPlots lists: Sulfinator lists: Rdisop lists: pbcore lists: GeneExpressionSignature lists: sybil - Efficient Constrained Based Modelling in R lists: msbwt lists: MetaDrug lists: Reprever lists: POPBAM lists: SAMBLASTER lists: SpeedSeq lists: pyQPCR lists: RefFinder lists: PGS lists: miRprimer lists: iBMQ lists: NIMBL lists: TDARACNE lists: bamova lists: BAIT lists: ARNIE lists: fourSig lists: Mfuzz lists: MaryGold lists: TOPPAS lists: SPHINX lists: PhyloPythia lists: MATCHCLIP lists: mzMatch lists: Sequence Search and Alignment by Hashing Algorithm lists: ESPRIT lists: DySC lists: FPSAC lists: Scaffold builder lists: SNPiR lists: ACCUSA2 lists: MuTect lists: Pindel lists: rSeq lists: GERP lists: SiPhy lists: wANNOVAR lists: ViReMa lists: Smart Dictionary Lookup lists: VariantMaster lists: GeneWays lists: AdaptiveCrawler lists: NGS-Cleaner lists: flowQ lists: Database Enabled Code for Ideal Probe Hybridization Employing R lists: NGSmethPipe lists: Pyrocleaner lists: DecGPU lists: drFAST lists: MPscan lists: TAPyR lists: MutPred Splice lists: ContEst lists: Mini Analysis Guide for Microarrays lists: DDBJ Omics Archive lists: Chromas lists: OnEx - Ontology Evolution Explorer lists: BEBaC lists: FlipFlop lists: Phosphor Antibody Array Data Analysis lists: PhenoFam lists: forqs lists: GMcloser lists: GenomeWeb lists: Bycom lists: CorQ lists: NGS tools for the novice lists: Opera lists: SRMA lists: DeNovoGear lists: VarB lists: BAMseek lists: TriageTools lists: clipcrop lists: detecttd lists: FastUniq lists: GEUVADIS lists: TMAP lists: BISMA lists: FineSplice lists: RMAP lists: Sequencing Analysis Software lists: BLASR lists: GlycoWorkbench lists: jmzIdentML API lists: SciRoKo lists: HapCompass lists: JBrowse lists: DSRC lists: fastqz lists: GDC lists: GRS lists: PREFAB lists: BLASTP lists: Google Compute Engine lists: SplitSeek lists: ASC lists: NPEBseq lists: FUSIM lists: Geoffs Bio-Directories lists: Phred lists: MassGenomics lists: Illuminator lists: BAC lists: targetscan.Hs.eg.db lists: RmiR lists: MmPalateMiRNA lists: Starr lists: bsseq lists: Qvalue lists: ExomePeak lists: NextGenSeq(at)nature.com lists: AutoAssemblyD lists: CUDA-EC lists: rGADEM lists: qips lists: PICS lists: Jmosaics lists: SparseAssembler lists: BreakFusion lists: ParticleCall lists: DSGseq lists: R453Plus1Toolbox lists: SynView lists: ShortFuse lists: Cancer Gene Index lists: jmzML lists: CASVM lists: Birdseed lists: Reaper - Demultiplexing trimming and filtering sequencing data lists: GimmeMotifs lists: skewer lists: flowWorkspace lists: massiR lists: Transposon Insertion Finder lists: Shimmer lists: GenVision lists: DiMO lists: MetaPhyl lists: WiggleTools lists: EMI lists: SplicePlot lists: CrossMap lists: GraphIBD lists: rbsurv lists: Skylign lists: HMMvar lists: tbvar lists: STRViper lists: Breakway lists: Genometa lists: CATCHprofiles lists: VAAL lists: SLOPE lists: BreakSeq lists: Anchored Assembly lists: Bionimbus lists: ChIPMunk lists: RDPipeline lists: PeakAnalyzer lists: SomaticCall lists: Baa.pl lists: VirusHunter lists: seq2HLA lists: MUMmerGPU lists: GeneMeta lists: GenoMiner lists: GenoViewer lists: sim4cc lists: GenomicTools lists: Omixon Target HLA Typing lists: Omixon Target Data Analysis lists: PARalyzer lists: QualiMap lists: Lab7 lists: mlgt lists: BSSim lists: Golden Helix GenomeBrowse lists: HiPipe lists: MADAM lists: Microarray Data Analysis System lists: Automated Microarray Pipeline lists: MergeMaid lists: OmicsOffice for NGS SeqSolve lists: categoryCompare lists: metahdep lists: Plantagora lists: QUAST lists: TileQC lists: VectorFriends lists: vcflib lists: PHACCS lists: Sequedex lists: Genome Trax lists: VCFtools lists: NGSUtils lists: ChIP-seq lists: Tally lists: mapDamage lists: freeIbis lists: piCALL lists: ERGO lists: TALLYMER lists: KMC lists: DSK lists: Mutation Surveyor lists: BFCounter lists: snpStats: SnpMatrix and XSnpMatrix classes and methods lists: CNVtools lists: CGEN lists: RCASPAR lists: iterativeBMAsurv lists: multtest lists: globaltest lists: SABER lists: Local Ancestry in adMixed Populations lists: GemTools lists: MinimumDistance lists: ipPCA lists: ADMIXTURE lists: frappe lists: Mutascope lists: metabnorm lists: VegaMC lists: VanillaICE lists: SNPchip lists: SMAP lists: quantsmooth lists: mBPCR lists: ITALICS lists: GenoSet lists: exomeCopy lists: CGHregions lists: CGHbase lists: BlindCall lists: beadarraySNP lists: SSCprofiler lists: CGH-Explorer lists: GLAD lists: SNP and Variation Suite SNP Analysis lists: SNP and Variation Suite CNV Analysis lists: ProbRNA lists: methylMnM lists: methyAnalysis lists: les lists: ARRmNormalization lists: ChIPsim lists: Sherman lists: yaqcaffy lists: wateRmelon lists: sRAP lists: spotSegmentation lists: SNM lists: SNAGEE lists: Simpleaffy lists: qcmetrics lists: OLIN lists: MANOR lists: limmaGUI lists: ffpe lists: dyebias lists: DEXUS lists: BeadDataPackR lists: aroma.light lists: ArrayTools lists: beadarray lists: arrayQuality lists: arrayMvout lists: affyQCReport lists: affyPLM lists: affylmGUI lists: AffyExpress lists: waveTiling lists: KAnalyze lists: gprege lists: oneChannelGUI lists: CYCLE lists: LMGene lists: factDesign lists: pickgene lists: betr lists: NGSrich lists: SCAN.UPC lists: arrayQualityMetrics lists: CALIB lists: DEDS lists: Harshlight lists: MiChip lists: OCplus lists: bridge lists: FARMS lists: fRMA lists: genArise lists: lapmix lists: maCorrPlot lists: maSigPro lists: MACAT lists: maigesPack lists: MDQC lists: metaArray lists: nnNorm lists: plgem lists: PVCA lists: RAMA lists: stepNorm lists: virtualArray lists: LPE lists: DDBJ Sequence Read Archive lists: WegoLoc lists: Mugsy lists: Mspire-Simulator lists: CytoSPADE lists: vsn lists: ACME lists: GenGIS lists: CoGAPS lists: NTAP lists: ToppCluster lists: PyLOH lists: Nebula lists: Sequencher lists: flowFP lists: ChIPseeqer lists: CisGenome lists: CGHcall lists: rMAT lists: TileMap lists: Clustal Omega lists: BLASTN lists: SeqScape Software lists: BACContigEditor lists: Human Gene Mutation Database lists: AnimalTFDB lists: asSeq lists: Cuffdiff lists: BLASTX lists: SLqPCR lists: rSeqDiff lists: AffinDB lists: Enriched Domain Detector lists: A Classification of Mobile genetic Elements lists: PELICAN lists: nondetects lists: rlsim lists: Chilibot: Gene and Protein relationships from MEDLINE lists: unifiedWMWqPCR lists: HAPLOPAINTER lists: HOMOZYGOSITYMAPPER lists: QuasiSeq lists: sSeq lists: GERMLINE lists: MCMC.qpcr lists: CNVrd2 lists: TaLasso lists: pairedBayes lists: RNASeqBias lists: plateCore lists: PLINK lists: MACH 1.0 lists: PennSeq lists: FACTA+. lists: Prediction of Amyloid Structure Aggregation lists: TANGO lists: DNACLUST lists: InterMine lists: MSClust lists: ReCount - A multi-experiment resource of analysis-ready RNA-seq gene count datasets lists: RSVSim lists: TCC lists: SAMstrt lists: pRESTO lists: MEME Suite - Motif-based sequence analysis tools lists: PoissonSeq lists: CQN lists: GLiMMPS lists: TEMP lists: BEAGLE lists: SPP lists: BIRDSUITE lists: NASTIseq lists: BREAKDANCER lists: CAROL lists: COMPASS lists: CASAVA lists: flowClust lists: HSA lists: SPADE lists: AStalavista lists: Visual Molecular Dynamics lists: EXTREME lists: CYRILLIC lists: DINDEL lists: ASprofile lists: OrderedList lists: GenABEL lists: CCAT lists: Alt Event Finder lists: BroadPeak lists: SamSPECTRAL lists: THetA lists: TCW lists: GATK lists: Degust lists: flowUtils lists: DAVID lists: RchyOptimyx lists: StatAlign lists: Arabidopsis thaliana Protein Interactome Database lists: FGED lists: ExpressionPlot lists: S-MART lists: Pecan lists: SeqMonk lists: Ray lists: tbrowse lists: Bacteriome.org lists: Apollo lists: RAVEN lists: PEDIGRAPH lists: BAliBASE lists: TEQC lists: rSNPs MAPPER lists: rSNPBase lists: SNP Function Portal lists: flowType lists: SNPper lists: MADELINE lists: CanSNPer lists: ADaCGH2 lists: SGA lists: NormaCurve lists: GapMis lists: TRAMS lists: SNPMeta lists: SNPAAMapper lists: METAL lists: OLORIN lists: openADAM lists: SeqEM lists: SHARCGS lists: DMET-Analyzer lists: PEDHUNTER lists: AffyPipe lists: pSTIING lists: PTMcode lists: SHORTY lists: POLYMUTT lists: TissueNet - The Database of Human Tissue Protein-Protein Interactions lists: TRIP Database lists: SNVer lists: BISC lists: Primate Orthologous Exon Database lists: PurBayes lists: PyroHMMvar lists: flowViz lists: ChIPSeq Peak Finder lists: SpliceAid-F lists: Vennt lists: flowTrans lists: Spliceosome Database lists: cisRED: cis-regulatory element lists: ASPicDB lists: SAMTOOLS lists: HEXEvent lists: DBASS lists: FlyFactorSurvey lists: SNAP - SNP Annotation and Proxy Search lists: STIFDB lists: Cake lists: MPromDb lists: ProTISA lists: circlize lists: AmiGO lists: flowQB lists: Cinteny lists: RegPrecise lists: STRUCTURE lists: SVA lists: SYZYGY lists: TcoF lists: Matchprot lists: WebGeSTer DB lists: pfSNP lists: shinyTANDEM lists: CistromeMap lists: metaRNASeq lists: ZOOM lists: flowPlots lists: ImaGene lists: VAAST lists: ARACNE lists: FR-HIT lists: PROVEAN lists: flowPhyto lists: flowCore lists: flowMerge lists: RankAggreg lists: ConsensusPathDB lists: MAIA (Microarray Image Analysis) lists: CORUM lists: CoryneRegNet lists: miso-lims lists: COSMIC - Catalogue Of Somatic Mutations In Cancer lists: cpnDB: A Chaperonin Database lists: flowMap lists: rmeta lists: flowMeans lists: CTCFBSDB lists: spliceR lists: flowMatch lists: flowFit lists: DEMI lists: Binding MOAD lists: DBD: Transcription factor prediction database lists: CodonCodes TraceViewer lists: RelocaTE lists: MAGE lists: flowCyBar lists: Iterative Signature Algorithm lists: Variant Reporter Software lists: RepARK lists: PolyPhred lists: dbSNP lists: BEETL-fastq lists: DWGSIM lists: Ensembl lists: DBTBS lists: MIAME lists: MAQC lists: HaploClique lists: DBTSS: Database of Transcriptional Start Sites lists: DNA DataBank of Japan (DDBJ) lists: ISO lists: SBARS lists: Clinical and Laboratory Standards Institute lists: JGI Genome Portal lists: Cancer Genomics Consortium lists: BEAT lists: DOMINO: Domain peptide interactions lists: R Tutorial - An R Introduction to Statistics lists: R Tutorial lists: DOMINE: Database of Protein Interactions lists: GenomeSmasher lists: DOSY Toolbox lists: MUMA lists: Database of Rice Transcription Factors lists: VennDiagram lists: Quick-R lists: EcoCyc lists: Tree of Life lists: flowBeads lists: EDAS - EST-Derived Alternative Splicing Database lists: eggNOG lists: NRDR lists: YLoc lists: CAMERA - Collection of annotation related methods for mass spectrometry data lists: EID: Exon-Intron Database lists: WoLF PSORT lists: Entrez Gene lists: Mason lists: QualitySNPng lists: EPDnew lists: realSFS lists: pymzML lists: RUbioSeq lists: PBSIM lists: PennCNV lists: pIRS lists: PeptideShaker lists: ShotGun lists: Gibbs Motif Sampler lists: Zebrafish Information Network (ZFIN) lists: Wessim lists: BioStar lists: MBASED lists: discoSnp lists: RVD lists: SEEK lists: MethylAid lists: ExomeDepth lists: libmgf lists: Autophagy Database lists: T3DB lists: RopeBWT2 lists: e-Driver lists: sapFinder lists: PharmGKB lists: CTF lists: SuperTarget lists: DrugBank lists: PANDAseq lists: NCBI database of Genotypes and Phenotypes (dbGap) lists: leeHom lists: Reflect lists: Mapix lists: Rainbow lists: CASBAH lists: TelSeq lists: Pathview lists: GLProbs lists: rBiopaxParser lists: DSS lists: GATE lists: NetPathMiner lists: NMR metabolomics database of Linkoping lists: GenBank lists: HINT lists: libCSAM lists: RNA Abundance Database lists: GeneCards lists: BINOCh lists: AliView lists: TherMos lists: ANDES lists: PacmonSTR lists: RMassBank lists: FisHiCal lists: Mutation Annotation and Genomic Interpretation lists: Circleator lists: IMEx - The International Molecular Exchange Consortium lists: Batch Oligo Selection Script lists: iontree lists: MicroVigene lists: Greengenes lists: Basic4Cseq lists: rDock lists: hot scan lists: International HapMap Project lists: BiGGR lists: mzR lists: PAPi lists: pNovo+ lists: COV2HTML lists: CODEHOP lists: CNVassoc lists: PRO lists: Hollywood lists: StreamingTrim lists: pLabel lists: HomoloGene lists: aCGH.Spline lists: pBuild lists: Time-series RNA-seq Analysis Package lists: CGHnormaliter lists: Type-III-Secretion-System related database lists: SMRT-Analysis lists: CPTRA lists: mtDB - Human Mitochondrial Genome Database lists: AltAnalyze - Alternative Splicing Analysis Tool lists: Chimera lists: IMG System lists: Babelomics lists: MRFSEQ lists: ms lims lists: ChIPMonk lists: Gel2DE lists: UCSF Spot lists: ProRata lists: R-pbutils lists: MITOMAP - A human mitochondrial genome database lists: NOISeq lists: Dpos lists: Gene Weaver lists: pFind lists: Canadian College of Medical Geneticists lists: BRAIN lists: Isopat lists: R-pbh5 lists: pbh5tools lists: SMRT View lists: JASPAR lists: enviPat lists: bwtool lists: MoSDi lists: tweeDEseq lists: DIALIGN lists: PacBioToCA lists: DiNuP lists: Gutentag lists: Parametric Time Warping lists: SurvComp lists: SASqPCR lists: enviPick lists: GeneFisher lists: Triplex lists: MPprimer lists: MIPE lists: MFEprimer lists: DnaSP lists: FAS-DPD lists: SURPI lists: MAPPER - Multi-genome Analysis of Positions and Patterns of Elements of Regulation lists: MachiBase lists: Primer3Plus lists: e-PCR lists: NeuroMab lists: In-Silico PCR lists: JETTA lists: MapViewer lists: Primer-BLAST lists: WormBase lists: eQtlBma lists: JuncBASE lists: MethDB lists: pairheatmap lists: MISO lists: HYDEN lists: mrsFAST lists: PredictNLS lists: mrCaNaVaR lists: NovelSeq lists: PlantLoc lists: Primer3 lists: FastSNP lists: Proteome Analyst Specialized Subcellular Localization Server lists: NYCE lists: GeneScissors lists: ngLOC lists: MultiLoc lists: GeneCruiser lists: MetaLocGramN lists: FastPCR lists: miRNAMap lists: HUPO Proteomics Standards Initiative lists: SaskPrimerFS lists: rDiff lists: Database of Interacting Proteins (DIP) lists: Solas lists: Pipeliner lists: iLoc-Animal lists: QDNAseq lists: ResponseNet lists: SynSysNet lists: XORRO lists: Stacks lists: SECISearch3 and Seblastian lists: SALT lists: HyperTree lists: Primer Designer lists: r3Cseq lists: Gene Set Enrichment Analysis lists: Piano lists: PHAST lists: NHGRI: Establishing a Central Resource of Data from Genome Sequencing Projects lists: NGSadmix lists: Gemi lists: Talking Glossary of Genetic Terms lists: PathGuide: the pathway resource list lists: SplicingCompass lists: RNAhybrid lists: LUMPY lists: Geospiza lists: SpliCQ lists: ORFprimer lists: JCVI Primer Designer lists: Assembly Based ReAligner lists: deFuse lists: Xenbase lists: PoPoolation2 lists: OmicCircos lists: Amplicon lists: PrimerSeq lists: Genedata Expressionist lists: biobambam lists: RCircos lists: ggbio lists: DAFGA lists: MIPgen lists: PicTar lists: BlockClust lists: PIRSF lists: miR-PREFeR lists: MouseNET lists: PlantProm DB lists: MAGI lists: PLANTTFDB lists: ALDEx2 lists: qBasePLUS lists: RefGenes lists: HTqPCR lists: BestKeeper lists: NanoStringNorm lists: NormFinder lists: NormqPCR lists: PolymiRTS lists: PPDB: Plant Promoter Database lists: ddCt lists: GEOSS lists: PReMod lists: EasyqpcR lists: NanoStriDE lists: GBSA lists: LaSSO lists: NAPPA lists: nSolver Analysis Software lists: MAGENTA lists: MetABEL lists: ProNIT lists: genomation lists: metagen lists: BMIQ lists: FadE lists: metaphor lists: SWAN lists: PROSITE lists: Parseq lists: qPrimerDepot lists: Bpipe lists: Nestly lists: Snakemake lists: SNAPE-pooled lists: NGSANE lists: jmzTab lists: JISTIC lists: Savant lists: MetaSKAT lists: Human Variome Project lists: PoPoolation lists: RefSeq lists: MultiPhen lists: RegulonDB lists: MF-GE lists: PheWAS R Package lists: EBSeq lists: MSMS lists: RAREMETAL lists: RevMan lists: GEPAT lists: Polyester lists: SET lists: J-Express lists: UEA sRNA toolkit lists: Osprey lists: RINS lists: PyroBayes lists: PEAR lists: JATAC lists: SeqExpress lists: Quantitative Enrichment of Sequence Tags lists: Pash 3.0 lists: Factorbook lists: FlyTF.org lists: My Cancer Genome lists: Pathosystems Resource Integration Center lists: MSG lists: InsertionMapper lists: PubMed Central lists: GeneCommittee lists: INMEX lists: TagDust lists: PASS-bis lists: HLASeq lists: FIDEA lists: EGAPP lists: DCTD lists: Hapmix lists: BamView lists: PerM lists: Mercury lists: CDP lists: CB-Commander lists: BSRD lists: DER Finder lists: Artemis: Genome Browser and Annotation Tool lists: PeaKDEck lists: PubChem lists: Babel lists: bcbio-nextgen lists: SIDER lists: EpiGRAPH lists: DRUT lists: Ancestrymap lists: VIROME lists: Vanator lists: FACIL lists: Velvet-SC lists: SNiPer-HD lists: Squeezambler lists: UniGene lists: SCPD - Saccharomyces cerevisiae promoter database lists: GASSST lists: SnoopCGH lists: Taverna lists: PASHA lists: miRDeepFinder lists: STAR lists: Spanki lists: VAMPS lists: Basic OligoNucleotide Design lists: Tree and reticulogram REConstruction lists: ACT: Artemis Comparison Tool lists: SPInDel lists: Kdetrees lists: tree editor lists: Genomedata lists: BioDiscovery Nexus Copy Number lists: TETRA lists: MetaCluster-TA lists: DELLY lists: QuickGO lists: TAIR lists: CompostBin lists: Nonpareil lists: BioPig lists: LMAT lists: AbundanceBin lists: TaxSOM lists: NuChart lists: ProViDE lists: UnifiedGenotyper lists: SOrt-ITEMS lists: RAIphy lists: Human DNA Polymerase Gamma Mutation Database lists: Pfam lists: Distributed String Mining Framework lists: Pplacer lists: deStruct lists: Phymm and PhymmBL lists: USeq lists: NucPosSimulator lists: NBC lists: SVMerge lists: MLTreeMap lists: SVseq lists: SEQanswers lists: PRISM - Pair Read Informed Split Mapper lists: miRNAKey lists: MG-RAST lists: Information Hyperlinked Over Proteins lists: PubMed lists: MetaPhyler lists: MARTA lists: NCBI BioSample lists: BioSample Database at EBI lists: DiScRIBinATE lists: VariationHunter lists: NCBI BLAST lists: IBIS: Inferred Biomolecular Interactions Server lists: NCBI Sequence Read Archive (SRA) lists: MetaPhlAn lists: Classifier for Metagenomic Sequences lists: MapAl lists: European Genome phenome Archive lists: TemplateFilter lists: Minia lists: MiTCR lists: M-pick lists: CARMA lists: SLIQ lists: DNAPlotter lists: AmphoraNet lists: UPARSE lists: SOPRA lists: ESPRIT-Tree lists: HPC-CLUST lists: mirWIP lists: SSPACE lists: GoMapMan lists: G-BLASTN lists: SINA lists: Bambus lists: AGORA lists: GRASS lists: MIP Scaffolder lists: Scarpa lists: MBCluster.Seq lists: cortex var lists: Flux Simulator lists: BEERS lists: SNPeffect lists: MMAPPR lists: Cloudbreak lists: comrad lists: qSNP lists: SomaticIndelDetector lists: SomaticSniper lists: aldex lists: UnoSeq lists: Traph lists: RNA-SeQC lists: PoPoolation TE lists: RetroSeq lists: T-lex lists: SLIDE lists: VFS lists: Project HOPE lists: PANTHER Evolutionary analysis of coding SNPs lists: rQuant lists: Naturejobs lists: jobs.ac.uk lists: ASOoViR lists: RNA-eXpress lists: MethPipe lists: AnnTools lists: AVIA lists: CandiSNPer lists: CHAoS lists: COVA lists: methylKit lists: dbNSFP lists: GESND lists: VAGrENT lists: Human Splicing Finder lists: NGS-SNP lists: Oncotator lists: PHAge Search Tool lists: SCAN lists: SeqAnt lists: SNPdat lists: ORMAN lists: FRCbam lists: SNPdbe lists: SnpEff lists: SNPnexus lists: SPOT - Biological prioritization after a SNP association study lists: VARIANT lists: ABSOLUTE lists: ExPANdS lists: HIVCD lists: PathSeq lists: READSCAN lists: VirusFinder lists: VirusSeq lists: PredictHaplo lists: QuRe lists: ShoRAH lists: V-Phaser 2 lists: NSMAP lists: FlowSim lists: SimRare lists: SAMtools/BCFtools lists: MiTie lists: GeneTalk lists: iReckon lists: Genomic Datasharing lists: IsoformEx lists: IQSeq lists: ERANGE lists: FusionMap lists: Bioinformatics(at)school lists: PhenoMan lists: Models of SHM Targeting and Substitution lists: AGE lists: Breakpointer lists: CLEVER Toolkit lists: Clippers lists: CREST lists: Indelocator lists: GASVPro lists: Hydra lists: inGAP lists: VelociMapper lists: PEMer lists: SPLITREAD lists: SpliceSeq lists: Scripture lists: Omicsoft Sequence Aligner lists: SOAPindel lists: G-Mo.R-Se lists: SEECER lists: RSeQC lists: SeqWare lists: CloVR lists: PolySearch lists: MiRPara lists: PIE the search lists: miRdSNP lists: Hmmer lists: MuGeX lists: SysCall lists: KGGSeq lists: MycoCosm lists: EBIMed lists: HighWire lists: Coremine Medical lists: Assembly Likelihood Estimator lists: CoPub lists: ABS filter lists: NCBO Annotator lists: CHANCE lists: phantompeakqualtools lists: CoIN lists: SwissRegulon lists: becas lists: GEM lists: Anne O'Tate lists: (at)Note lists: PeakSeq lists: FaBox lists: CoverageCalculator lists: Spliceman lists: Yabi lists: footprintDB lists: MolBioLib lists: Moa lists: PRISM (Stanford database) lists: Knime4Bio lists: Ergatis lists: bioKepler lists: Platypus lists: PING lists: Binding and Expression Target Analysis lists: BioExtract lists: Bio-Linux lists: NeuroLex lists: ChEA lists: ChIPBase lists: CistromeFinder lists: pyDNase lists: hmChIP lists: HOCOMOCO lists: PAZAR lists: TFinDIT lists: AtProbe lists: DATFAP lists: StSNP lists: SolexaQA lists: TOBFAC lists: MapNext lists: BSeQC lists: SKIPPY lists: SAMStat lists: QC-Chain lists: Bis-SNP lists: Bisulfighter lists: CpG MPs lists: CyMATE lists: GobyWeb lists: Kismeth lists: MethylExtract lists: MethylViewer lists: MLML lists: MSC lists: PRINSEQ lists: NGSQC lists: NGS QC Toolkit lists: NextClip lists: Geneious Microsatellite Plugin lists: DistMap lists: PRIMEGENS lists: VDJ lists: Bowtie lists: CASHX lists: CUSHAW lists: CUSHAW2-GPU lists: GNUMAP lists: GSNAP lists: Kraken lists: Maq lists: MOSAIK lists: mrFAST lists: NextGenMap lists: ngsTools lists: PASS lists: Jellyfish lists: TIGRFAMS lists: Segemehl lists: SeqMap lists: SHRiMP lists: WHAM lists: SMALT lists: Scalable Nucleotide Alignment Program lists: SOAP3 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lists: QUASR lists: simhtsd lists: 1000 Genomes: A Deep Catalog of Human Genetic Variation lists: GBrowse lists: seqbias lists: EagleView lists: HIA lists: qrqc lists: Genomes Unzipped lists: eXpress lists: ArtificialFastqGenerator lists: BarraCUDA lists: RazerS lists: Therapeutic Target Database lists: YeTFaSCo lists: PrimerBank lists: MORGAN lists: CROP lists: MeDUSA lists: Arabidopsis Gene Regulatory Information Server lists: SimSeq lists: MetMap lists: MIGen lists: eDMR lists: ProDom lists: BAMStats lists: CD-HIT-OTU lists: microRNA.org lists: Database of Genomic Variants lists: DeconSeq lists: Psort lists: Kinetic Data of Bio-molecular Interaction lists: PRODORIC lists: Database of Poplar Transcription Factors lists: BioRAT lists: Database of Arabidopsis Transcription Factors lists: RTPrimerDB- The Real-Time PCR and Probe Database lists: Pripper lists: COG lists: Yeast Intron Database lists: QDMR lists: Haldanes Sieve lists: Kevin's GATTACA World lists: Next-Gen Sequencing lists: 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HapFABIA lists: Relate lists: Pedigree-Draw lists: Pedimap lists: Phylogeny Programs lists: NHLBI Grand Opportunity Exome Sequencing Project lists: PhenCode lists: SNP and indel Imputability lists: draw-sneakpeek lists: GensearchNGS lists: HugeSeq lists: MutFinder lists: RTG Variant lists: reseqtools lists: SIMPLEX lists: TREAT lists: WEP lists: breseq lists: SVDetect lists: CEQer lists: CONTRA lists: ExomeCNV lists: CNAnorm lists: CNAseg lists: CnD lists: CNValidator lists: CNVer lists: CNVnator lists: Control-FREEC lists: JointSLM lists: readDepth lists: rSW-seq lists: SegSeq lists: CoRAL - Classification of RNAs by Analysis of Length lists: miRDeep lists: miREval lists: miRExpress lists: miRspring lists: omiRas lists: ShortStack lists: tRNAscan-SE lists: RNAsnp lists: BCmicrO lists: C-mii lists: DIANA-LncBase lists: TarBase lists: HOCTAR lists: SICER lists: MapSplice lists: TargetScan lists: MicroCosm Targets lists: MicroMUMMIE lists: miRDB lists: miRNA lists: miRNAminer lists: 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Pathway Analysis lists: Roadmap Epigenomics Project lists: PEER lists: KEGG lists: Antibodypedia lists: AcroMine lists: g:Profiler lists: HighWire Press lists: Biometric Research Branch: ArrayTools lists: R Project for Statistical Computing lists: Nu-OSCAR lists: Pedigree-Draw lists: Community Cyberinfrastructure for Advanced Marine Microbial Ecology Research and Analysis lists: ChIP-Atlas lists: ProLinks Database of Functional Linkages lists: Myrna lists: lilikoi lists: GOTrack lists: Ximmer lists: NAT/NCS2 Hound lists: VoxBlast lists: Splicing Express lists: RNA22 lists: miRWalk lists: miRmap lists: AbundantOTU+ lists: MutaGene lists: VecScreen lists: NMRProcFlow lists: Attie Lab Diabetes Database lists: Agilent MassHunter WorkStation - Qualitative Analysis for GC/MS lists: XYalign lists: fermi lists: metaPocket lists: DoG picker lists: TiltPicker lists: NeuroAnatomy Toolbox lists: MAxEntScan lists: MetaNeighbor lists: OmicsNet lists: Discovar assembler lists: Supernova assembler lists: Epik lists: Ligprep lists: PathwayMatcher lists: EMAN lists: Geno2MP lists: duphold lists: ConsensusClusterPlus lists: EpiFactors lists: fastp lists: NanoFilt lists: Heatmapper lists: Nuclear Hormone Receptor Scan lists: Metacell lists: OmicsSIMLA lists: ScaffMatch lists: MITE-Tracker lists: PCAGO lists: BinPacker lists: Bridger lists: RaceID lists: PRSice lists: cwl-metrics lists: mzStudio lists: OrthoFinder lists: SwiftOrtho lists: ClustVis lists: CWL-Airflow lists: CytExpert Software lists: Computational Suite for Bioinformaticians and Biologists lists: WTDBG lists: prank lists: MACS lists: NeuroAnatomy Toolbox lists: CentroidFold lists: pKiss lists: BIDS Validator lists: PILER lists: trimAl lists: NOVOPlasty lists: GeSeq lists: Diffusion Toolkit lists: PathwayNet lists: miRTarBase lists: CLC Genomics Workbench lists: PyNWB lists: FastProject lists: DiseaseMeth lists: WormAtlas lists: GeneATLAS lists: immuneXpresso lists: BioAssay Express lists: ChemRICH lists: TransDecoder lists: GADMA lists: Alien-hunter lists: ALTER lists: AMAP lists: Anfo lists: Aragorn lists: Arden lists: Ariba lists: Augustus lists: Avogadro lists: Axe lists: Baitfisher lists: BALLView lists: Bamtools lists: Barrnap lists: BEAST lists: BioPerl lists: bioSyntax lists: Bio-tradis lists: BOXSHADE 3.21 lists: Canu lists: Cassiopee lists: Cdbfasta lists: CD-HIT lists: Circlator lists: Clearcut lists: Clonalframe lists: ClonalOrigin lists: Clustal W2 lists: COILS: Prediction of Coiled Coil Regions in Proteins lists: Concavity lists: Cufflinks lists: cwltool lists: DIAMOND lists: DISULFIND lists: Database of Secondary Structure Assignments lists: Eigensoft lists: EMBOSS lists: ESTScan lists: FASTLINK lists: FastQC lists: FastTree lists: FigTree lists: Fsm-lite lists: Gamgi lists: Genome BioInformatics Research Lab - gff2ps lists: Ghemical lists: GIIRA lists: GROMACS lists: Gwyddion lists: Bioinformatics Toolkit lists: PyMOL lists: Biopython lists: PRESTO: Genetic Association Analysis Software lists: CummeRbund lists: ProtTest lists: Prokka lists: Computational Structural Biology Toolbox lists: LEfSe lists: jModelTest lists: khmer lists: Atac lists: LAMARC lists: FreeContact lists: libRoadRunner lists: TFBS lists: MicrobiomeUtilities lists: MINIMAC lists: MultiQC lists: Nanopolish lists: IgBLAST lists: PHYLIP lists: PhyML lists: Pilon lists: ADEGENET lists: phytools lists: R/QTL lists: RDKit: Open-Source Cheminformatics Software lists: RepeatMasker lists: SeaView lists: SEER lists: Seq-Gen lists: StringTie lists: THESIAS lists: Transterm lists: Vascular Modeling Toolkit lists: Aegean lists: andi lists: Bandage lists: Eagle lists: BioJava Project lists: Bio++ lists: BRAKER lists: Bustools lists: Centrifuge Classifier lists: ChromHMM lists: DeepNano lists: Ecopcr lists: Edtsurf lists: E-mem lists: Examl lists: Falcon lists: Fastaq lists: Fastml lists: Fastqtl lists: FSA lists: GARLI lists: Garlic lists: gdpc lists: GenomeTools lists: Gentle lists: Gff2aplot lists: gffread lists: GraPhlAn lists: Gubbins lists: Harvest-tools lists: HiLive lists: Hinge lists: HyPhy lists: Indelible lists: IQ TREE lists: Fastahack lists: Mash lists: MEGAHIT lists: Minimap2 lists: mosdepth lists: MUMmer lists: OptiType lists: Phyutility lists: Porechop lists: QIIME2 lists: Racon lists: Phangorn lists: pheatmap lists: Recognition of Errors in Assemblies using Paired Reads lists: RELION lists: Roary lists: Salmon lists: Scoary lists: University of Zurich SCRM - Cell-and Tissue Biobank lists: Seqtk lists: Short Read Sequence Typing for Bacterial Pathogens lists: Vmatch lists: ABACAS lists: AceDB lists: tRNAscan-SE lists: Antibody Resource Page is related to: COnsensus-DEgenerate Hybride Oligonucleotide Primers is related to: Classifier for Metagenomic Sequences is related to: Pedigree-Draw is related to: CAZy- Carbohydrate Active Enzyme is related to: PolyPhen: Polymorphism Phenotyping is related to: BioRAT is related to: dChip Software is related to: Rat Genome Database (RGD) is related to: Comparative Toxicogenomics Database (CTD) is related to: VISTA Enhancer Browser is related to: affy		PMID:25024350	THIS RESOURCE IS NO LONGER IN SERVICE	nlx_155571, r3d100012426	https://doi.org/10.17616/R3PJ3N	http://omictools.com/	SCR_002250	genOMIC tools	2026-08-15 11:22:09	34
Roadmap Epigenomics Project Resource Report Resource Website 100+ mentions	Roadmap Epigenomics Project (RRID:SCR_008924)	Roadmap Epigenomics Project	data or information resource, project portal, organization portal, portal, consortium	THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 11, 2022. Project for human epigenomic data from experimental pipelines built around next-generation sequencing technologies to map DNA methylation, histone modifications, chromatin accessibility and small RNA transcripts in stem cells and primary ex vivo tissues selected to represent normal counterparts of tissues and organ systems frequently involved in human disease. Consortium expects to deliver collection of normal epigenomes that will provide framework or reference for comparison and integration within broad array of future studies. Consortium is also committed to development, standardization and dissemination of protocols, reagents and analytical tools to enable research community to utilize, integrate and expand upon this body of data.	epigenomics, genome, genetic variation, gene regulation, genomics, stem cell, primary cell, tissue, blood, lung, heart, gastrointestinal tract, brain, embryonic stem cell, fetus, adult, cell, epigenome, methylome, chip-seq, rna, breast, muscle, connective, gastrointestinal, genitourinary, fat, hematopoietic stem cell, thymus, spleen, placenta, kidney, adrenal, induced pluripotent stem cell, skin, angular gyrus, anterior caudate, cingulate gyrus, hippocampus, inferior temporal lobe, mid frontal lobe, substantia nigra, dna methylation, histone modification, chromatin, rna transcript, dna, methylation, histone, data set	is used by: NIF Data Federation is used by: VizHub is used by: Integrated Data Annotation is listed by: 3DVC is listed by: OMICtools is related to: NCBI Epigenomics is related to: Gene Expression Omnibus is related to: Spark is related to: Deep Blue Epigenomic Data Server has parent organization: NIH Common Fund is parent organization of: Human Epigenome Atlas is parent organization of: WashU Epigenome Browser is parent organization of: VizHub		PMID:22690667 PMID:20944595 PMID:20944597	THIS RESOURCE IS NO LONGER IN SERVICE	nlx_151644, OMICS_01564			SCR_008924	Epigenomics Program, Common Fund Epigenomics, NIH Roadmap Epigenomics Program, NIH Roadmap Epigenomics Project, Common Fund Epigenomics Program, NIH Common Fund Epigenomics, NIH Common Fund Epigenomics Program, Common Fund Roadmap Epigenomics Program	2026-08-17 09:33:31	323
NCBI Resource Report Resource Website 10000+ mentions	NCBI (RRID:SCR_006472)	NCBI	nonprofit organization	A portal to biomedical and genomic information. NCBI creates public databases, conducts research in computational biology, develops software tools for analyzing genome data, and disseminates biomedical information for the better understanding of molecular processes affecting human health and disease.	biomedical, genomic, molecular biology, health, disease, database, computational biology, bio.tools	is used by: NIF Data Federation is listed by: NIDDK Information Network (dkNET) is listed by: bio.tools is listed by: Debian is related to: AmiGO is related to: NCBI Viral Genomes is related to: Clone DB is related to: PubReader is related to: OMIA - Online Mendelian Inheritance in Animals is related to: European Nucleotide Archive (ENA) is related to: Plant Co-expression Annotation Resource is related to: METAGENOTE is related to: Phyutility is related to: CaspBase is related to: Prokaryotic Genomes Automatic Annotation Pipeline has parent organization: National Library of Medicine is parent organization of: MedGen is parent organization of: dbSTS is parent organization of: PubMed Health is parent organization of: BLASTP is parent organization of: GQuery is parent organization of: BLASTN is parent organization of: GTEx eQTL Browser is parent organization of: BLASTX is parent organization of: Homology Maps Page is parent organization of: PEDHUNTER is parent organization of: Conserved Domain Database is parent organization of: NCBI Genome Survey Sequences Database is parent organization of: High Throughput Genomic Sequences Division is parent organization of: AceView is parent organization of: dbMHC is parent organization of: dbSNP is parent organization of: Entrez Gene is parent organization of: NCBI Genome is parent organization of: NCBI database of Genotypes and Phenotypes (dbGap) is parent organization of: GenBank is parent organization of: International HapMap Project is parent organization of: IgBLAST is parent organization of: Lowes Syndrome Mutation Database is parent organization of: HomoloGene is parent organization of: Influenza Virus Resource is parent organization of: Distant Regulatory Elements is parent organization of: e-PCR is parent organization of: MapViewer is parent organization of: Primer-BLAST is parent organization of: dbVar is parent organization of: NCBI Taxonomy is parent organization of: NCBI Protein Database is parent organization of: Gene Reference into Function is parent organization of: Protein Clusters is parent organization of: RefSeq is parent organization of: TPA is parent organization of: GENSAT at NCBI - Gene Expression Nervous System Atlas is parent organization of: COBALT: Constraint-based Multiple Alignment Tool is parent organization of: PubMed Central is parent organization of: UniLib is parent organization of: NCBI Structure is parent organization of: PubChem is parent organization of: Anopheles gambiae (African malaria mosquito) genome view is parent organization of: UniGene is parent organization of: NLM Catalog is parent organization of: Entrez GEO Profiles is parent organization of: Nucleotide database is parent organization of: NCBI BioSystems Database is parent organization of: CBLAST is parent organization of: NCBI BioProject is parent organization of: NCBI Probe is parent organization of: PubMed is parent organization of: NCBI BioSample is parent organization of: NCBI Nucleotide is parent organization of: NCBI Structure: Cn3D is parent organization of: NCBI BLAST is parent organization of: IBIS: Inferred Biomolecular Interactions Server is parent organization of: NCBI Sequence Read Archive (SRA) is parent organization of: Gene Expression Omnibus (GEO) is parent organization of: NCBI Popset is parent organization of: PIE the search is parent organization of: Genetic Testing Registry is parent organization of: NCBI Resource List is parent organization of: NCBI dbRBC is parent organization of: NCBI YouTube Channel is parent organization of: NCBI Epigenomics is parent organization of: ClinVar is parent organization of: Genome Reference Consortium is parent organization of: GeneReviews is parent organization of: Molecular Imaging and Contrast Agent Database is parent organization of: Consensus CDS is parent organization of: UniSTS is parent organization of: HIV-1 Human Protein Interaction Database is parent organization of: Assay Guidance Manual is parent organization of: Bookshelf is parent organization of: COG is parent organization of: Gene Expression Omnibus is parent organization of: Molecular Modelling DataBase is parent organization of: Organelle Genome Resources is parent organization of: SKY/M-FISH/CGH is parent organization of: dbEST is parent organization of: JournalReview.org is parent organization of: NCBI GenBank via FTP is parent organization of: PubChem Compound is parent organization of: Molecular Modeling DataBase is parent organization of: Vector Alignment Search Tool is parent organization of: PubChem BioAssay is parent organization of: NCBI Genome Workbench is parent organization of: TBLASTN is parent organization of: TBLASTX is parent organization of: Mega BLAST is parent organization of: Genetic Codes is parent organization of: HIV-1, Human Protein Interaction Database is parent organization of: PubReader is parent organization of: PubChem Substance is parent organization of: OMIA - Online Mendelian Inheritance in Animals is parent organization of: OMIM is parent organization of: 1000 Genomes: A Deep Catalog of Human Genetic Variation is parent organization of: GeneTests is parent organization of: NCBI Genome Survey Sequences Database is parent organization of: MagicBlast is parent organization of: RefSeq is parent organization of: Sequin is parent organization of: Batch Entrez is parent organization of: Entrez is parent organization of: tbl2asn is parent organization of: Whole Genome Shotgun (WGS) Project is parent organization of: Digital Differential Display (DDD) is parent organization of: BLASTClust is parent organization of: PASC is parent organization of: Open Reading Frame Finder is parent organization of: Genotyping works with: Human Mouse Disease Connection works with: A plasmid Editor works with: Database of genes related to Repeat Expansion Diseases			Public, The community can contribute to this resource	nif-0000-00139, biotools:ncbi_resources	https://bio.tools/ncbi_resources	http://www.ncbi.nih.gov/	SCR_006472	National Center for Biotechnology Information, NCBI - National Center for Biotechnology Information	2026-08-15 11:23:24	29053
re3data.org Resource Report Resource Website 50+ mentions	re3data.org (RRID:SCR_006782)	re3data.org	registry, data or information resource, database	Global registry of research data repositories from all academic disciplines that allows the easy identification of appropriate research data repositories, both for data producers and users. Information icons display principal attributes of a repository that can be used for multi-faceted searches. Repository operators can suggest their infrastructures to be listed via a simple application form. A repository is indexed when the minimum requirements are met, i.e. mode of access to the data and repository, as well as the terms of use.	vocabulary, registry, metadata standard, data sharing, FASEB list	lists: Academic Seismic Portal at UTIG lists: National Addiction and HIV Data Archive Program (NAHDAP) lists: Alaska Climate Research Center lists: MINT lists: Internet Archive lists: MatrixDB lists: Animal QTLdb lists: MPIDB lists: BeetleBase lists: Conserved Domain Database lists: NeuroMorpho.Org lists: Marine Geoscience Data System lists: Cell Centered Database lists: dbMHC lists: Human Mortality Database lists: UniProt lists: Ligand-Gated Ion Channel Database lists: EcoGene lists: NCBI Genome lists: ESTHER lists: Genomes Online Database lists: Gramene lists: American FactFinder lists: Human Proteinpedia lists: IMGT/HLA lists: Influenza Virus Resource lists: DOE Joint Genome Institute lists: MetaCrop lists: ISPS Data Archive lists: MorphBank lists: miRBase lists: Inter-university Consortium for Political and Social Research (ICPSR) lists: Mouse Phenome Database (MPD) lists: MorphoBank lists: dbVar lists: Open Science Framework lists: TalkBank lists: Nucleic Acid Database lists: NCBI Taxonomy lists: NCBI Protein Database lists: PHI-base lists: Alberta Geological Survey lists: Protein Clusters lists: Reactome lists: Cell Image Library (CIL) lists: eyeMoviePedia lists: ALLBUS - German General Social Survey lists: TPA lists: Agency for Healthcare Research and Quality lists: Alaska Satellite Facility lists: Current German Weather Stations lists: NCBI Structure lists: BOLD lists: PDBe - Protein Data Bank in Europe lists: FishBase lists: Nucleotide database lists: NCBI BioSystems Database lists: SGD lists: Data.gov lists: RHEA lists: European Bioinformatics Institute lists: NCBI Probe lists: NCBI Nucleotide lists: Database of Genomic Variants Archive (DGVa) lists: NCBI Popset lists: Whole Brain Atlas lists: EMAGE Gene Expression Database lists: Limited Access Datasets From NIMH Clinical Trials lists: Tree of Life Web Project lists: TreeBASE lists: UCSC Genome Browser lists: UniPROBE lists: Crystallography Open Database (COD) lists: National Archive of Computerized Data on Aging (NACDA) lists: EOL - Encyclopedia of Life lists: VectorBase lists: caArray lists: NCBI Epigenomics lists: GWAS Central lists: QTL Archive lists: Proteome Commons lists: XNAT Central lists: 4TU.Datacentrum lists: Amazon Web Services Public Data Sets lists: ChemSpider lists: DataStaR lists: Rat Genome Database (RGD) lists: Atlas of Living Australia lists: Electron Microscopy Data Bank at PDBe (MSD-EBI) lists: Phytozome lists: FlyBase lists: MaizeGDB lists: Tuberculosis Database lists: InterPro lists: UNAVCO lists: The Human Protein Atlas lists: InnateDB lists: UniSTS lists: Launchpad lists: Surveillance Epidemiology and End Results lists: FAOSTAT lists: Adult Blood Lead Epidemiology and Surveillance Interactive Database lists: HIstome: The Histone Infobase lists: HPRD - Human Protein Reference Database lists: Biological General Repository for Interaction Datasets (BioGRID) lists: INFEVERS lists: Reciprocal Net lists: Africa Centre for Health and Population Studies lists: BeeBase lists: Biodiversity Heritage Library lists: Databrary lists: ACADIS Gateway lists: ACEpepDB lists: AIMS Data Centre lists: ALADDIN lists: ASTER lists: Access to Archival Databases lists: AidData lists: Alaska Ocean Observing System lists: J. Craig Venter Institute lists: Wellcome Trust Sanger Institute; Hinxton; United Kingdom lists: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) lists: myExperiment lists: BioModels lists: Addgene lists: Antarctic and Southern Ocean Data Portal lists: OpenTopography lists: National Snow and Ice Data Center lists: Biological Magnetic Resonance Data Bank (BMRB) lists: dbSNP lists: Ensembl lists: DNA DataBank of Japan (DDBJ) lists: Entrez Gene lists: Zebrafish Information Network (ZFIN) lists: GitHub lists: DrugBank lists: NCBI database of Genotypes and Phenotypes (dbGap) lists: Gene Expression Nervous System Atlas lists: SumsDB lists: GenBank lists: GermOnline lists: HGNC lists: Greengenes lists: Neuroscience Information Framework lists: HomoloGene lists: ArrayExpress lists: JASPAR lists: WormBase lists: Database of Interacting Proteins (DIP) lists: EMDataResource.org lists: ResearchCompendia lists: Proteomics Identifications (PRIDE) lists: RefSeq lists: FAIRsharing lists: PubChem lists: FigShare lists: UniGene lists: NIMH Data Archive lists: TAIR lists: NCBI BioProject lists: SMD lists: OpenNeuro lists: SoyBase lists: Beta Cell Biology Consortium lists: Biomedical Informatics Research Network lists: Dryad Digital Repository lists: Atlantic Canada Conservation Data Centre lists: Agri-environmental Research Data Repository lists: Australian Antarctic Data Centre lists: Antibody Registry lists: Mouse Genome Informatics (MGI) lists: European Nucleotide Archive (ENA) lists: NIDDK Central Repository lists: GigaScience lists: PeptideAtlas lists: 1000 Genomes: A Deep Catalog of Human Genetic Variation lists: IntAct lists: fMRI Data Center lists: Gene Expression Omnibus lists: Data and Specimen Hub (NICHD DASH) lists: NIDA Data Share lists: The NINDS Human Cell and Data Repository (NHCDR) lists: Microphysiology Systems Database lists: Dataverse Network Project lists: Mendeley lists: Vivli lists: Metabolomics Workbench lists: Qualitative Data Repository lists: Protocols.io lists: ZENODO lists: STRENDA lists: Code Ocean lists: Brain Image Library lists: German Collection of Microorganisms and Cell Cultures lists: INPTDAT lists: DataONE lists: GBIF - Global Biodiversity Information Facility lists: Lamont-Doherty Core Repository lists: CaltechDATA lists: Synapse lists: Incorporated Research Institutions for Seismology lists: Cancer Imaging Archive (TCIA) lists: Mendeley Data lists: UK Data Archive lists: GigaDB lists: PhysioNet lists: Project Data Sphere lists: Influenza Research Database (IRD) lists: Simtk.org lists: ResearchGate lists: Virus Pathogen Resource (ViPR) lists: Cambridge Structural Data Base lists: 4TU.ResearchData lists: Aperta Turkey Open Archive lists: Polar Data Catalogue lists: Arch lists: Australian Data Archive lists: Australian Ocean Data Network lists: Barbara A. Mikulski Archive for Space Telescopes lists: Aston Data Explorer lists: Birkbeck Research Data lists: B2SHARE Eudat lists: BioHeritage National Science Challenge Data Repository lists: Bolin Centre Database lists: Brown Digital Repository is listed by: FORCE11 is related to: U.S. Census Bureau is related to: Rat Genome Database (RGD) is related to: ResearchCompendia has parent organization: Humboldt University of Berlin; Berlin; Germany has parent organization: Karlsruhe Institute of Technology; Karlsruhe; Germany	DFG		The community can contribute to this resource	nlx_152589			SCR_006782	Registry of Research Data Repositories, re3data.org: Registry of Research Data Repositories, re3data	2026-08-17 09:32:58	89

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