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URL: https://github.com/cbg-ethz/COMPASS
Proper Citation: COMPASS (RRID:SCR_029215)
Description: Software phylogenetic tool designed for single-cell DNA sequencing (scDNAseq) data. Used to infer the joint history and evolutionary trees of single nucleotide variants (SNVs) and copy number alterations (CNAs) within tumors. Designed to be used with MissionBio's Tapestri data, where a small number of amplicons (50-300) are sequenced for thousands of single-cells.
Synonyms: , COpy number and Mutation Phylogeny from Amplicon Single-cell Sequencing, COMPASS: COpy number and Mutation Phylogeny from Amplicon Single-cell Sequencing
Resource Type: software application, software resource, source code
Defining Citation: PMID:37582954
Availability: Free, Available for download, Freely available
Resource Name: COMPASS
Resource ID: SCR_029215
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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