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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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PubMed Resource Report Resource Website 10000+ mentions |
PubMed (RRID:SCR_004846) | bibliography, data or information resource, database | Public bibliographic database that provides access to citations for biomedical literature from MEDLINE, life science journals, and online books. Citations may include links to full-text content from PubMed Central and publisher web sites. PubMed citations and abstracts include fields of biomedicine and health, covering portions of life sciences, behavioral sciences, chemical sciences, and bioengineering. Provides access to additional relevant web sites and links to other NCBI molecular biology resources. Publishers of journals can submit their citations to NCBI and then provide access to full-text of articles at journal web sites using LinkOut. | biomedical, literature, publication, open, access, bibliography, gold standard |
is used by: Knowledgebase for Addiction Related Genes is used by: Drug Related Gene Database is used by: ChannelPedia is used by: Molecular Imaging and Contrast Agent Database is used by: Colwiz is used by: Nowomics is used by: PINT is listed by: OMICtools is listed by: FORCE11 is listed by: LabWorm is related to: Chilibot: Gene and Protein relationships from MEDLINE is related to: ImpactStory is related to: Automated recognition of brain region mentions in neuroscience literature. is related to: Information Hyperlinked Over Proteins is related to: PubMed Central is related to: PIE the search is related to: Anne O'Tate is related to: PubBrain is related to: Europe PubMed Central is related to: ResearchGate is related to: CBioC is related to: CiteAb is related to: LitInspector is related to: RefMED is related to: Pubmed Commons is related to: iBIOFind is related to: Ensembl Variation is related to: MEDLINE is related to: XplorMed is related to: Linked Neuron Data is related to: NCBI Structure is related to: MeSH is related to: MEDLINE is related to: EBIMed is related to: Coremine Medical is related to: NIF Literature is related to: GoPubMed is related to: Integrated Auto-Extracted Annotation is related to: Polbase is related to: Integrated Manually Extracted Annotation is related to: DaTo is related to: NIF Registry Automated Crawl Data has parent organization: NCBI works with: Open Regulatory Annotation Database works with: rentrez |
NLM | Free, Freely available | nlx_82958, OMICS_01195 | http://www.force11.org/node/4652, http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed | SCR_004846 | Pub Med | 2026-08-21 12:37:28 | 106635 | ||||||
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CBioC Resource Report Resource Website 1+ mentions |
CBioC (RRID:SCR_008863) | CBioC | software resource | A tool for extraction and collaboration for data curation related to biology. CBioC runs as a web browser extension and allows unobtrusive use of the system during the regular course of research in PubMed. It can also be accessed directly (without having to install a plug-in). Automated text extraction is used as a starting point to bootstrap the database, but then it is up to biologists improve upon the extracted data, ironing out inconsistencies by subsequent edits on a massive scale. * After install, it loads when you visit PubMed. * Gets interactions from PubMed abstracts. * Allows you to vote and modify extracted data. * Also shows data from BIND, DIP, MINT, GRID, IntAct. | text extraction, curation, crowd sourcing |
is listed by: 3DVC is related to: PubMed has parent organization: Arizona State University; Arizona; USA |
Arizona State University 0412000 | PMID:17951840 | nlx_149235 | SCR_008863 | CBioC - Collaboratively uncovering the nuggets of knowledge buried in millions of biomedical texts, Collaborative Bio Curation | 2026-08-15 11:23:44 | 1 | ||||||
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Anne O'Tate Resource Report Resource Website 1+ mentions |
Anne O'Tate (RRID:SCR_005340) | Anne O'Tate | service resource | A web based search tool to help you gain an overview of the set of articles (up to 25,000 most recent articles) retrieved by a PubMed query. Once you enter a query, you can select different types of summary information to view: Important words, Topics, Authors, Affiliations, Journals, Year, Clustered by topic. | database |
is listed by: OMICtools is related to: PubMed has parent organization: University of Illinois at Chicago; Illinois; USA |
PMID:18279519 | OMICS_01171 | SCR_005340 | 2026-08-15 11:23:14 | 2 | ||||||||
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Ensembl Variation Resource Report Resource Website 1+ mentions |
Ensembl Variation (RRID:SCR_001630) | Ensembl Variation | analysis service resource, data analysis service, data or information resource, database, production service resource, service resource | Public database that stores areas of genome that differ between individual genomes (variants) and, where available, associated disease and phenotype information. Different types of variants for several species: single nucleotide polymorphisms (SNPs), short nucleotide insertions and/or deletions, and longer variants classified as structural variants (including CNVs). Effects of variants on the Ensembl transcripts and regulatory features for each species are predicted. You can run same analysis on your own data using Variant Effect Predictor. These data are integrated with other data sources in Ensembl, and can be accessed using the API or website. For several different species in Ensembl, they import variation data (SNPs, CNVs, allele frequencies, genotypes, etc) from a variety of sources (e.g. dbSNP). Imported variants and alleles are subjected to quality control process to flag suspect data. In human, they calculate linkage disequilibrium for each variant, by population. | genome, disease, phenotype, genomic variant, single nucleotide polymorphism nucleotide, insertion, deletion, structural variant, copy number variation, inversion, translocation, somatic variant, allele frequency, genotype, disease phenotype, inherited disease |
is used by: MONARCH Initiative is related to: dbSNP is related to: Database of Genomic Variants Archive (DGVa) is related to: PubMed is related to: Animal QTLdb is related to: OMIA - Online Mendelian Inheritance in Animals has parent organization: Ensembl |
PMID:23203987 PMID:20562413 PMID:20459810 PMID:20459805 |
Free, Available for download, Freely available | nlx_153897 | SCR_001630 | ensembl variation | 2026-08-21 12:36:32 | 6 | ||||||
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iBIOFind Resource Report Resource Website |
iBIOFind (RRID:SCR_001587) | iBIOFind | data or information resource, database, service resource, software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 17, 2016. C#.NET 4.0 WPF / OWL / REST / JSON / SPARQL multi-threaded, parallel desktop application enables the construction of biomedical knowledge through PubMed, ScienceDirect, EndNote and NIH Grant repositories for tracking the work of medical researchers for ranking and recommendations. Users can crawl web sites, build latent semantic indices to generate literature searches for both Clinical Translation Science Award and non-CTSA institutions, examine publications, build Bayesian networks for neural correlates, gene to gene interactions, protein to protein interactions and as well drug treatment hypotheses. Furthermore, one can easily access potential researcher information, monitor and evolve their networks and search for possible collaborators and software tools for creating biomedical informatics products. The application is designed to work with the ModelMaker, R, Neural Maestro, Lucene, EndNote and MindGenius applications to improve the quality and quantity of medical research. iBIOFind interfaces with both eNeoTutor and ModelMaker 2013 Web Services Implementation in .NET for eNeoTutor to aid instructors to build neuroscience courses as well as rare diseases. Added: Rare Disease Explorer: The Visualization of Rare Disease, Gene and Protein Networks application module. Cinematics for the Image Finder from Yale. The ability to automatically generate and update websites for rare diseases. Cytoscape integration for the construction and visualization of pathways for Molecular targets of Model Organisms. Productivity metrics for medical researchers in rare diseases. iBIOFind 2013 database now includes over 150 medical schools in the US along with Clinical Translational Science Award Institutions for the generation of biomedical knowledge, biomedical informatics and Researcher Profiles. | workflow, model, prediction, research trend, rare disease, resource discovery, biomedicine, genomic, neural network, visualization, reporting, search engine, genetic, neural, clinical translation science award, biomedical resource, funding, gene, protein, neuron, collaborator, publication, trend, grant, funding opportunity, report |
is related to: ModelMaker is related to: Neural Maestro is related to: eNeoTutor is related to: Cytoscape is related to: Biomedical Resource Ontology is related to: PubMed has parent organization: The Cromwell Workshop |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_153829 | SCR_001587 | 2026-08-21 12:36:32 | 0 | ||||||||
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NCBI Resource Report Resource Website 10000+ mentions |
NCBI (RRID:SCR_006472) | NCBI | nonprofit organization | A portal to biomedical and genomic information. NCBI creates public databases, conducts research in computational biology, develops software tools for analyzing genome data, and disseminates biomedical information for the better understanding of molecular processes affecting human health and disease. | biomedical, genomic, molecular biology, health, disease, database, computational biology, bio.tools |
is used by: NIF Data Federation is listed by: NIDDK Information Network (dkNET) is listed by: bio.tools is listed by: Debian is related to: AmiGO is related to: NCBI Viral Genomes is related to: Clone DB is related to: PubReader is related to: OMIA - Online Mendelian Inheritance in Animals is related to: European Nucleotide Archive (ENA) is related to: Plant Co-expression Annotation Resource is related to: METAGENOTE is related to: Phyutility is related to: CaspBase is related to: Prokaryotic Genomes Automatic Annotation Pipeline has parent organization: National Library of Medicine is parent organization of: MedGen is parent organization of: dbSTS is parent organization of: PubMed Health is parent organization of: BLASTP is parent organization of: GQuery is parent organization of: BLASTN is parent organization of: GTEx eQTL Browser is parent organization of: BLASTX is parent organization of: Homology Maps Page is parent organization of: PEDHUNTER is parent organization of: Conserved Domain Database is parent organization of: NCBI Genome Survey Sequences Database is parent organization of: High Throughput Genomic Sequences Division is parent organization of: AceView is parent organization of: dbMHC is parent organization of: dbSNP is parent organization of: Entrez Gene is parent organization of: NCBI Genome is parent organization of: NCBI database of Genotypes and Phenotypes (dbGap) is parent organization of: GenBank is parent organization of: International HapMap Project is parent organization of: IgBLAST is parent organization of: Lowes Syndrome Mutation Database is parent organization of: HomoloGene is parent organization of: Influenza Virus Resource is parent organization of: Distant Regulatory Elements is parent organization of: e-PCR is parent organization of: MapViewer is parent organization of: Primer-BLAST is parent organization of: dbVar is parent organization of: NCBI Taxonomy is parent organization of: NCBI Protein Database is parent organization of: Gene Reference into Function is parent organization of: Protein Clusters is parent organization of: RefSeq is parent organization of: TPA is parent organization of: GENSAT at NCBI - Gene Expression Nervous System Atlas is parent organization of: COBALT: Constraint-based Multiple Alignment Tool is parent organization of: PubMed Central is parent organization of: UniLib is parent organization of: NCBI Structure is parent organization of: PubChem is parent organization of: Anopheles gambiae (African malaria mosquito) genome view is parent organization of: UniGene is parent organization of: NLM Catalog is parent organization of: Entrez GEO Profiles is parent organization of: Nucleotide database is parent organization of: NCBI BioSystems Database is parent organization of: CBLAST is parent organization of: NCBI BioProject is parent organization of: NCBI Probe is parent organization of: PubMed is parent organization of: NCBI BioSample is parent organization of: NCBI Nucleotide is parent organization of: NCBI Structure: Cn3D is parent organization of: NCBI BLAST is parent organization of: IBIS: Inferred Biomolecular Interactions Server is parent organization of: NCBI Sequence Read Archive (SRA) is parent organization of: Gene Expression Omnibus (GEO) is parent organization of: NCBI Popset is parent organization of: PIE the search is parent organization of: Genetic Testing Registry is parent organization of: NCBI Resource List is parent organization of: NCBI dbRBC is parent organization of: NCBI YouTube Channel is parent organization of: NCBI Epigenomics is parent organization of: ClinVar is parent organization of: Genome Reference Consortium is parent organization of: GeneReviews is parent organization of: Molecular Imaging and Contrast Agent Database is parent organization of: Consensus CDS is parent organization of: UniSTS is parent organization of: HIV-1 Human Protein Interaction Database is parent organization of: Assay Guidance Manual is parent organization of: Bookshelf is parent organization of: COG is parent organization of: Gene Expression Omnibus is parent organization of: Molecular Modelling DataBase is parent organization of: Organelle Genome Resources is parent organization of: SKY/M-FISH/CGH is parent organization of: dbEST is parent organization of: JournalReview.org is parent organization of: NCBI GenBank via FTP is parent organization of: PubChem Compound is parent organization of: Molecular Modeling DataBase is parent organization of: Vector Alignment Search Tool is parent organization of: PubChem BioAssay is parent organization of: NCBI Genome Workbench is parent organization of: TBLASTN is parent organization of: TBLASTX is parent organization of: Mega BLAST is parent organization of: Genetic Codes is parent organization of: HIV-1, Human Protein Interaction Database is parent organization of: PubReader is parent organization of: PubChem Substance is parent organization of: OMIA - Online Mendelian Inheritance in Animals is parent organization of: OMIM is parent organization of: 1000 Genomes: A Deep Catalog of Human Genetic Variation is parent organization of: GeneTests is parent organization of: NCBI Genome Survey Sequences Database is parent organization of: MagicBlast is parent organization of: RefSeq is parent organization of: Sequin is parent organization of: Batch Entrez is parent organization of: Entrez is parent organization of: tbl2asn is parent organization of: Whole Genome Shotgun (WGS) Project is parent organization of: Digital Differential Display (DDD) is parent organization of: BLASTClust is parent organization of: PASC is parent organization of: Open Reading Frame Finder is parent organization of: Genotyping works with: Human Mouse Disease Connection works with: A plasmid Editor works with: Database of genes related to Repeat Expansion Diseases |
Public, The community can contribute to this resource | nif-0000-00139, biotools:ncbi_resources | https://bio.tools/ncbi_resources | http://www.ncbi.nih.gov/ | SCR_006472 | National Center for Biotechnology Information, NCBI - National Center for Biotechnology Information | 2026-08-21 12:37:57 | 29053 | |||||
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ResearchGate Resource Report Resource Website 100+ mentions |
ResearchGate (RRID:SCR_006505) | ResearchGate | community building portal, data or information resource, database, portal | A professional, social network and publication database geared to researchers where the latest field specific publications can be read, publications with other specialists can be discussed, and collaboration with colleagues is facilitated. They provide researchers with access to around 40 million abstracts and tens of thousands of Full texts, uploaded by the authors themselves. Researchers can search through 7 of the largest databases simultaneously, such as PubMed, IEEE & CiteSeer. | social network, biology, literature, publication, bibliographic, abstract, collaborate, statistics, citation, FASEB list |
is listed by: FORCE11 is listed by: DataCite is listed by: re3data.org is related to: PubMed is parent organization of: ResearchGate: Research Jobs is parent organization of: ResearchGate: Research Conferences |
Free, Account required, The community can contribute to this resource | nlx_143849, DOI:10.1314, DOI:10.17616/R36H16, r3d100012227 | https://doi.org/10.17616/R36011, https://doi.org/10.17616/r36H16, https://doi.org/10.1314/, https://dx.doi.org/10.1314/, https://doi.org/10.17616/R36H16 | SCR_006505 | Research Gate, Research gate | 2026-08-21 12:37:58 | 432 | ||||||
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ChannelPedia Resource Report Resource Website 10+ mentions |
ChannelPedia (RRID:SCR_003807) | Channelpedia | data or information resource, database | An information management framework for comprehensive ion channel information. It is a knowledge base system centered on genetically expressed ion channel models and it encourages researchers of the field to contribute, build and refine the information through an interactive wiki-like interface. It is web-based, freely accessible and currently contains 187 annotated ion channels with 50 Hodgkin-Huxley models (September 2014). Channelepdia provides an ideal platform to collectively build ion channel knowledge base by accommodating both structured and unstructured data. The current version of Channelpedia contains the following sections : Introduction, Genes, Ontologies, Interactions, Structure, Expression, Distribution, Function, Kinetics and Models. Newly published literature related to ion channels is automatically queried every week from PubMed and added to respective categories. Currently, Channelpedia contains ~180,000 abstracts related to ion channels from Pubmed. | ion channel, model, cell, gene, transcript, ontology, interaction, hodgkinhuxley model, kinetics |
uses: PubMed uses: Gene Ontology uses: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) uses: UniProt uses: Ensembl uses: IntAct uses: Rat Genome Database (RGD) has parent organization: Blue Brain Project |
PMID:22232598 | The community can contribute to this resource, Free, Public | nlx_158108 | SCR_003807 | Channel pedia | 2026-08-21 12:37:09 | 12 | ||||||
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GoPubMed Resource Report Resource Website 10+ mentions |
GoPubMed (RRID:SCR_005823) | GoPubMed | data or information resource, database, service resource | A web server which allows users to explore PubMed search results with the Gene Ontology, a hierarchically structured vocabulary for molecular biology. GoPubMed submits a user''''s keywords to PubMed, retrieves the abstracts, detects Gene Ontology terms in the abstracts, displays the subset of Gene Ontology relevant to the original query, and allows the user to browse through the ontology displaying associated papers and their GO annotation. Platform: Online tool | other analysis, literature curation and exploration, gene ontology, pubmed, literature, bio.tools |
is listed by: OMICtools is listed by: Gene Ontology Tools is listed by: Debian is listed by: bio.tools is related to: Gene Ontology is related to: PubMed has parent organization: Biotechnology Center of the TU Dresden |
European Union IST-2004-506779 | PMID:15980585 | Free for academic use | biotools:gopubmed, nlx_149328, OMICS_01183 | https://bio.tools/gopubmed | SCR_005823 | 2026-08-21 12:37:48 | 29 | |||||
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Linked Neuron Data Resource Report Resource Website |
Linked Neuron Data (RRID:SCR_003658) | LND | data or information resource, data set | Neuroscience data and knowledge from multiple scales and multiple data sources that has been extracted, linked, and organized to support comprehensive understanding of the brain. The core is the CAS Brain Knowledge base, a very large scale brain knowledge base based on automatic knowledge extraction and integration from various data and knowledge sources. The LND platform provides services for neuron data and knowledge extraction, representation, integration, visualization, semantic search and reasoning over the linked neuron data. Currently, LND extracts and integrates semantic data and knowledge from the following resources: PubMed, INCF-CUMBO, Allen Reference Atlas, NIF, NeuroLex, MeSH, DBPedia/Wikipedia, etc. | neuron, brain, neuroscience, protein, gene, neurotransmitter |
is related to: Common Upper Mammalian Brain Ontology is related to: Neuroscience Information Framework is related to: PubMed is related to: NeuroLex is related to: MeSH is related to: DBpedia is related to: Allen Mouse Brain Reference Atlas is related to: Allen Institute for Brain Science has parent organization: Chinese Academy of Sciences; Beijing; China |
nlx_157812 | SCR_003658 | Linked Neuron Data (LND) | 2026-08-21 12:37:16 | 0 | ||||||||
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Integrated Auto-Extracted Annotation Resource Report Resource Website |
Integrated Auto-Extracted Annotation (RRID:SCR_005892) | Integrated AEA, Auto-Extracted Annotation | data or information resource, data set | A virtual database that indexes both BioNOT for negation data, and the Resource Discovery Pipeline: an automated resource discovery and semi-automated type characterization with text-mining scripts that facilitate curation team efforts to discover, integrate and display new content. This virtual database currently indexes the following resources: * BioNOT, http://snake.ims.uwm.edu/bionot/index.php?searchterm=mecp2+autism&submit=Search * Resource Discovery Pipeline, http://lucene1.neuinfo.org/nif_resource/current/ | annotation, negative data |
is used by: NIF Data Federation is related to: BioNOT is related to: NIF Registry Automated Crawl Data is related to: PubMed has parent organization: Integrated |
NIH Blueprint for Neuroscience Research ; NIDA Contract HHSN271200577531C |
PMID:22434839 | Data are licensed by their respective owners. Use and distribution is subject to the Terms of Use by the original resource as well as the, Creative Commons Attribution License | nlx_149462 | http://neuinfo.org/nif/nifgwt.html?query=nlx_149462 | SCR_005892 | NIF Integrated Automatically Extracted Annotation, NIF Integrated Auto. Extracted Annotation, NIF Integrated Auto-Extracted Annotation, Integrated Automatically Extracted Annotation, Integrated Auto Extracted Annotation, NIF Auto-Extracted Annotation | 2026-08-21 12:37:49 | 0 | ||||
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NIF Literature Resource Report Resource Website |
NIF Literature (RRID:SCR_005401) | NIF Literature | data or information resource, narrative resource | Simultaneous search across multiple literature indices, including PubMed and Open Access literature, it is one of the core resources of NIF accessed through the NIF search interface. Literature results are displayed under the Literature tab. Features: * Facet by Year, Author, and / or Journal * Option to search open access literature only * Sort by relevance or year * Snippets from the full text of the paper are included in search results where search term was found * LinkOuts are now provided for some papers. These mean that someone associated a reagent, piece of data, note/blog, etc., with this specific publication. * Searching within sections of articles is now possible within the open access literature. For more info, see, http://neuinfo.org/about/release_notes_4.5.shtm#search. * Annotate papers. Any user can submit a public comment or annotation of an open access paper through the DOMEO tool. For more information, see http://neuinfo.org/about/release_notes_4.5.shtm#annotate | literature, journal, pubmed, pubmed central, biomedical, open access, abstract, linkout |
is related to: NeuroMorpho.Org is related to: NIF Web Services is related to: DOMEO is related to: PubMed is related to: PubMed Central has parent organization: Neuroscience Information Framework |
NIH Blueprint for Neuroscience Research | nlx_144510 | http://neuinfo.org/nif/nifgwt.html?query=*&tab=literature | SCR_005401 | Neuroscience Information Framework Literature | 2026-08-21 12:37:44 | 0 | ||||||
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PINT Resource Report Resource Website 100+ mentions |
PINT (RRID:SCR_007856) | PINT | data or information resource, database | A protein-protein interactions thermodynamic database which contains data of several thermodynamic parameters along with sequence and structural information experimental conditions and literature information. Each entry contains numerical data for features of the interacting proteins such as the free energy change, dissociation constant, association constant, enthalpy change, and heat capacity change. PINT includes: the name and source of the proteins involved in binding, SWISS-PROT and Protein Data Bank (PDB) codes, secondary structure and solvent accessibility of residues at mutant positions, measuring methods, and experimental conditions such as buffers, ions and additives, and literature information. PINT is cross-linked with other related databases such as PIR, SWISS-PROT, PDB and the NCBI PUBMED literature database. | database, protein protein interaction, thermodynamic, protein structure, protein database, FASEB list |
uses: UniProtKB uses: PubMed |
nif-0000-03291 | SCR_007856 | Protein-protein Interactions Thermodynamic Database | 2026-08-21 12:38:28 | 119 | ||||||||
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DaTo Resource Report Resource Website 10+ mentions |
DaTo (RRID:SCR_010280) | DaTo | data or information resource, database | A biological database and software tool catalog based on text mined and human annotated url mentions in PubMed abstracts. Data are annotated as to the author''''s country of origin and url status is checked. | metadata, catalog, text mining |
is related to: Cytoscape is related to: PubMed has parent organization: Zhejiang University; Zhejiang; China |
National Natural Science Foundation of China 30971743; National Natural Science Foundation of China 31371328 |
nlx_157296 | SCR_010280 | DA&TO - The Atlas of biology databases and tools, DAandTO, Da&To | 2026-08-21 12:38:59 | 12 | |||||||
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CiteAb Resource Report Resource Website 50+ mentions |
CiteAb (RRID:SCR_009653) | CiteAb | data or information resource, database | Citation-ranked antibody search engine that provides a simple way to find antibodies that work. They use the number of citations as a transparent method to rank antibodies. Nobody can pay to be ranked higher. They are always looking for more commercial and academic antibodies to make CiteAb better. There is no charge to list. | antibody, search engine, citation |
is listed by: FORCE11 is related to: PubMed has parent organization: University of Bath; North East Somerset; United Kingdom |
Free, The community can contribute to this resource | nlx_156037 | http://www.force11.org/node/4768 | SCR_009653 | CiteAb: The Antibody Search Engine | 2026-08-21 12:38:48 | 55 | ||||||
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NIF Registry Automated Crawl Data Resource Report Resource Website 1+ mentions |
NIF Registry Automated Crawl Data (RRID:SCR_012862) | NIF Registry Automated Crawl Data, RDP | data or information resource, data set | An automatic pipeline based on an algorithm that identifies new resources in publications every month to assist the efficiency of NIF curators. The pipeline is also able to find the last time the resource's webpage was updated and whether the URL is still valid. This can assist the curator in knowing which resources need attention. Additionally, the pipeline identifies publications that reference existing NIF Registry resources as this is also of interest. These mentions are available through the Data Federation version of the NIF Registry, http://neuinfo.org/nif/nifgwt.html?query=nlx_144509 The RDF is based on an algorithm on how related it is to neuroscience. (hits of neuroscience related terms). Each potential resource gets assigned a score (based on how related it is to neuroscience) and the resources are then ranked and a list is generated. | resource, mention, update |
is used by: NIF Data Federation is used by: Integrated Datasets is related to: PubMed Central is related to: Integrated Auto-Extracted Annotation is related to: Integrated Manually Extracted Annotation is related to: PubMed has parent organization: Neuroscience Information Framework |
U.S. Department of Health and Human Services ; NIH Blueprint for Neuroscience Research ; NIDA contract HHSN27120080035C |
PMID:22434839 | Individual resources within the data set are licensed by the respective owners. The data set of these resources is freely available for use and distribution by you subject to citation of NIF in accordance with the Creative Commons Attribution License. | nlx_144525 | http://lucene1.neuinfo.org/nif_resource/current/ | SCR_012862 | Resource Discovery Pipeline | 2026-08-21 12:39:39 | 2 | ||||
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EBIMed Resource Report Resource Website 1+ mentions |
EBIMed (RRID:SCR_005314) | EBIMed | service resource | A web application that combines Information Retrieval and Extraction from Medline. EBIMed finds Medline abstracts in the same way PubMed does. Then it goes a step beyond and analyses them to offer a complete overview on associations between UniProt protein/gene names, GO annotations, Drugs and Species. The results are shown in a table that displays all the associations and links to the sentences that support them and to the original abstracts. By selecting relevant sentences and highlighting the biomedical terminology EBIMed enhances your ability to acquire knowledge, relate facts, discover implications and, overall, have a good overview economizing the effort in reading. | protein, gene, annotation, drug, specie, association, database |
is listed by: OMICtools is related to: MEDLINE is related to: PubMed is related to: Gene Ontology is related to: UniProt is related to: NCBI Taxonomy is related to: MedlinePlus has parent organization: European Bioinformatics Institute |
OMICS_01180 | SCR_005314 | 2026-08-15 11:23:03 | 1 | |||||||||
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Coremine Medical Resource Report Resource Website 1+ mentions |
Coremine Medical (RRID:SCR_005323) | Coremine Medical | service resource | Service to access comprehensive information on diseases, drugs, treatments and medical biology. It is ideal for those seeking an overview of a complex subject while allowing the possibility to drill down to specific details. Search results are presented in a dashboard format comprized of panels containing various categories of information ranging from introductory sources to the latest scientific articles. | disease, drug, treatment, medical biology, text mining, health, medicine, biology, network, database |
is listed by: OMICtools is related to: MeSH is related to: Entrez Gene is related to: MEDLINE is related to: PubMed is related to: DrugBank is related to: Gene Ontology is related to: UniProt has parent organization: PubGene |
NLM ; European Union FP7 ; Research Council of Norway ; Innovation Norway |
Copyrighted | OMICS_01179 | SCR_005323 | 2026-08-15 11:23:13 | 6 | |||||||
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LitInspector Resource Report Resource Website 1+ mentions |
LitInspector (RRID:SCR_011870) | LitInspector | software resource | A literature search tool providing gene and signal transduction pathway mining within NCBI''''s PubMed database. Its sophisticated gene recognition and intuitive color coding increase the readability of abstracts and lets you analyze signal transduction pathways, diseases and tissue associations in a snap. Note: LitInspector has become part of the Literature & Pathways module of the Genomatix Software Suite. | gene, signal transduction, pathway, text-mining, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools is related to: PubMed has parent organization: Genomatix Solutions |
PMID:19417065 | OMICS_01187, biotools:litinspector | https://bio.tools/litinspector | SCR_011870 | 2026-08-15 11:24:25 | 4 | |||||||
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Colwiz Resource Report Resource Website 1+ mentions |
Colwiz (RRID:SCR_013759) | software resource | A reference manager software tool which manages references and journal articles. Individual users can search for and save references or share a library of resources with identified group members who can annotate and comment on the references | software, reference management, annotate, citation managers, mendeley |
uses: PubMed uses: IEEE uses: Citation Style Language is used by: ACS ChemWorx is listed by: Connected Researchers is related to: Connected Researchers has parent organization: University of Oxford; Oxford; United Kingdom |
University of Oxford | free, public | SCR_013759 | collective wizdom | 2026-08-15 11:24:59 | 1 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
Email: info_at_ dknet.org
