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dkNET Blog
dkNET community events and announcements in December, 2021
- 12:03am December 2, 2021
- 865 views
- Funding Opportunity, Event
dkNET provides updates on activities of interest to the NIDDK-supported community. You could keep up to date on these activities through our Twitter feed @dkNET_info, through our Community Calendar, or through dkNET e-mail list. If you have an event or funding opportunities you'd like to advertise, please contact us info_at_dknet.org. Here is the summary list of the dkNET updates, community events and funding opportunities in December, 2021.
[Recorded Webinar and Slides Are Available Now!] dkNET Webinar "PanoramaWeb: A Resource to Manage, Share, and Collaborate on Quantitative Mass Spectrometry Experiments"
- 10:47am November 29, 2021
- 1010 views
- News, Webinar
Come join us for a webinar presented by Dr. Michael MacCoss on Friday, December 10, 2021 to learn about the PanoramaWeb, a resource to manage, share, and collaborate on quantitative mass spectrometry experiments!
Come Meet the dkNET Team at ASCB/EMBO Annual Meeting Cell Bio Virtual 2021!
The dkNET team will be hosting two networking sessions at the ASCB/EMBO Annual Meeting Cell Bio Virtual 2021! Come join us to discuss challenges in using bioinformatics tools for bench researchers, and learn about FAIR data and new NIH mandates on data management and sharing on December 6 and December 7, 2021!
dkNET community events and announcements in November, 2021
- 07:39pm November 1, 2021
- 514 views
- News, Event, Funding Opportunity
dkNET provides updates on activities of interest to the NIDDK-supported community. You could keep up to date on these activities through our Twitter feed @dkNET_info, through our Community Calendar, or through dkNET e-mail list. If you have an event or funding opportunities you'd like to advertise, please contact us info_at_dknet.org. Here is the summary list of the dkNET updates, community events and funding opportunities in November, 2021.
[Recorded Webinar and Slides Are Available Now!] Join dkNET Webinar "The Microphysiology Systems Database (MPS-Db): A Platform For Aggregating, Analyzing, Sharing And Computationally Modeling In Vitro Data"
- 03:34pm October 22, 2021
- 1141 views
- News, Webinar
Come join us for a webinar presented by Dr. Bert Gough on Friday, November 12, 2021 to learn about the Microphysiology Systems Database (MPS-Db), a platform developed for the management, analysis, sharing, integration of preclinical and clinical information, computational modeling of data, and enhancing the in vitro model value and user workflow!
Congratulations! FDI Lab’s Dr. I Burak Ozyurt Places 1st in 9th BioASQ Challenge (Task 9b)
Congratulations to dkNET team member Dr. I Burak Ozyurt, who won first place in the 2021 BioASQ Challenge Task 9b!
[Recorded Webinar and Slides Are Available Now!] Join dkNET Webinar "YCharOS: Antibody Characterization Through Open Science"
Come join us for a webinar presented by Dr. Carl Laflamme on Friday, October 22, 2021 to learn about a useful resource YCharOS and learn how YCharOS characterizes through open science and contribute to make science more reproducible!
dkNET community events and announcements in October, 2021
- 03:28pm October 1, 2021
- 840 views
- News, Event, Funding Opportunity
dkNET provides updates on activities of interest to the NIDDK-supported community. You could keep up to date on these activities through our Twitter feed @dkNET_info, through our Community Calendar, or through dkNET e-mail list. If you have an event or funding opportunities you'd like to advertise, please contact us info_at_dknet.org. Here is the summary list of the dkNET updates, community events and funding opportunities in October, 2021.
[Recorded Webinar and Slides Are Available Now!] Join dkNET Webinar - GeneNetwork: Experimental Precision Medicine and Smart FAIR+ Data for Metabolomics and Diabetes Research
- 06:57pm September 24, 2021
- 1233 views
- News, Webinar
Come join us for a webinar presented by Dr. Robert W. Williams on Friday, October 8, 2021 to learn about experimental precision medicine and smart FAIR+ Data for metabolomics and diabetes Research!
[Recorded Webinar and Slides are Available Now!] Join dkNET Webinar: dkNET Hypothesis Center Live Demo
- 05:00pm September 14, 2021
- 1365 views
- News, Webinar
Join live dkNET webinar learning how to use the dkNET Hypothesis Center to answer your research questions and generate hypotheses on Friday, September 24, 2021 at 11am PT!
dkNET community events and announcements in September, 2021
- 05:05pm August 27, 2021
- 1233 views
- News, Event, Funding Opportunity
dkNET provides updates on activities of interest to the NIDDK-supported community. You could keep up to date on these activities through our Twitter feed @dkNET_info, through our Community Calendar, or through dkNET e-mail list. If you have an event or funding opportunities you'd like to advertise, please contact us info_at_dknet.org. Here is the summary list of the dkNET updates, community events and funding opportunities in September, 2021.
Join the D-Challenge - A Bioinformatics Challenge Focused on Type 1 Diabetes!
- 12:16pm August 27, 2021
- 1390 views
- News
Is the answer to Type 1 Diabetes already out there? Can you find it? The D-Challenge is a bioinformatics challenge focused on Type 1 diabetes. Enter as a team or an individual to compete for cash awards!
Join dkNET Bootcamp#4: Hypothesis Center on Sep. 10, 2021
dkNET Hypothesis Center is new and exciting. Learn about how it works and how to use it in a brief, interactive webinar.
Human Pancreatic Analysis Program (HPAP) launched RRIDs for donor pancreas biosamples
The RRID and dkNET team has been collaborating with the Human Pancreatic Analysis Program (HPAP) working on identifying donor pancreas biosamples. Now researchers can find RRIDs for HPAP biosamples and know who else published data from the same donors!
Join dkNET Bootcamp#3: Resource Reports on Aug. 20, 2021
What's exciting about RRID's? dkNET Resource Reports support robust & reproducible science. Attend a live, interactive webinar and learn how to access and use a wealth of Research Resource Identifiers.
dkNET community events and announcements in August, 2021
- 03:16pm August 4, 2021
- 769 views
- News, Event, Funding Opportunity
dkNET provides updates on activities of interest to the NIDDK-supported community. You could keep up to date on these activities through our Twitter feed @dkNET_info, through our Community Calendar, or through dkNET e-mail list. If you have an event or funding opportunities you'd like to advertise, please contact us info_at_dknet.org. Here is the summary list of the dkNET updates, community events and funding opportunities in August, 2021.
dkNET Academy is Launched this Summer!
- 03:03pm August 4, 2021
- 1090 views
- News
dkNET is partnered with the(sugar)science to create innovative events and tools for scientists and researchers! We are launching the dkNET academy this summer. Learn about the upcoming events including D-Challenge, Bootcamps, Off the Record, Clubhouse events, Intern diaries, dkNET paper of the week, and Lunch and Learn!
Congratulations! dkNET Principal Investigator Dr. Maryann Martone and Collaborators Published a New Article "A tool for assessing alignment of biomedical data repositories with open, FAIR, citation and trustworthy principles"!
- 03:24pm July 12, 2021
- 780 views
- News, Publication
Congratulations! dkNET Principal Investigator Dr. Maryann Martone and collaborators Drs. Fiona Murphy and Michael Bar-Sinai published a new article "A tool for assessing alignment of biomedical data repositories with open, FAIR, citation and trustworthy principles" in PLOS ONE! Learn about this helpful new tool for evaluating how well repositories support Open, FAIR, Citable and Trustworthy (OFCT) data!
dkNET community events and announcements in July, 2021
- 04:51pm July 1, 2021
- 1059 views
- News, Event, Funding Opportunity
dkNET provides updates on activities of interest to the NIDDK-supported community. You could keep up to date on these activities through our Twitter feed @dkNET_info, through our Community Calendar, or through dkNET e-mail list. If you have an event or funding opportunities you'd like to advertise, please contact us info_at_dknet.org. Here is the summary list of the dkNET updates, community events and funding opportunities in July, 2021.
Signaling Pathways Project Analysis Generates Hypotheses Around Host Responses to SARS-CoV-2 Infection in COVID-19
- 04:09pm June 23, 2021
- 1423 views
- Hypothesis Center, Stories of Discovery, SPP, News
Integrating archived SARS-CoV-2 infection transcriptomic datasets with signaling node transcriptomic datasets, SPP analytics generated novel hypotheses around SARS-CoV-2 infection that were subsequently independently confirmed by wet bench research laboratories.
Researchers Study Metabolic Rate and Response to Obesity Analyzing MMPC Energy Expenditure Data
- 04:07pm June 23, 2021
- 887 views
- Hypothesis Center, Stories of Discovery, MMPC, News
Using MMPC data generated across four MMPC Centers, researchers found that body composition and ambient temperature are the biggest influence on energy balance.
Join dkNET FAIR data resource bootcamp on June 22, 2021
Want to apply for an NIH grant? You WILL NEED THIS ! Learn how to use dkNET tools to help make sure your data is FAIR - Findable, Accessible, Interoperable, and Reproducible! Join dkNET FAIR data resource bootcamp on June 22 at 1pm PDT!
Congratulations to the dkNET team Dr. Chun-Nan Hsu and co-authors on publishing a paper "Antibody Watch: Text Mining Antibody Specificity from the Literature" in PLOS Computational Biology!
Congratulations to Dr. Chun-Nan Hsu and co-authors from the dkNET team, RRID team, FAIR Data Informatics Lab at University of California San Diego, and collaborators at National Central University in Taiwan on publishing a new paper "Antibody Watch: Text Mining Antibody Specificity from the Literature" in PLOS Computational Biology!
dkNET Partners With the(sugar)science to Promote Scientific Research Tools
- 09:15am June 10, 2021
- 1703 views
- News
dkNET is excited to announce our new partnership with the(sugar)science to increase the awareness of tools and services in supporting Type 1 diabetes research!
dkNET community events and announcements in June, 2021
- 11:26pm May 28, 2021
- 792 views
- News, Event, Funding Opportunity
dkNET provides updates on activities of interest to the NIDDK-supported community. You could keep up to date on these activities through our Twitter feed @dkNET_info, through our Community Calendar, or through dkNET e-mail list. If you have an event or funding opportunities you'd like to advertise, please contact us info_at_dknet.org. Here is the summary list of the dkNET updates, community events and funding opportunities in June, 2021.
Congratulations! SPP lead Dr. Neil McKenna and collaborators published a paper "A human liver chimeric mouse model for non-alcoholic fatty liver disease" in JHEP Reports
dkNET Hypothesis Center - Signaling Pathways Project (SPP) team collaborated with liver researchers and published a paper "A human liver chimeric mouse model for non-alcoholic fatty liver disease" in JHEP Reports. Scientists used SPP's NAFLD consensome to discover that NAFLD livers, compared to normal ones, have consistently higher levels of cholesterol synthesis enzyme transcripts!
[Recorded Webinar and Slides are Available Now!] Join dkNET Webinar - Appyters: Turning Jupyter Notebooks Into Data-Driven Web Apps
- 04:02pm May 17, 2021
- 1486 views
- News, Webinar
Come join us for a webinar presented by Dr. Avi Ma'ayan on Friday, May 28, 2021 to learn about Appyters, a useful web application that enables the rapid development of interactive web-based bioinformatics applications.
dkNET community events and announcements in May, 2021
- 11:13pm May 5, 2021
- 1130 views
- News, Event, Funding Opportunity
dkNET provides updates on activities of interest to the NIDDK-supported community. You could keep up to date on these activities through our Twitter feed @dkNET_info, through our Community Calendar, or through dkNET e-mail list. If you have an event or funding opportunities you'd like to advertise, please contact us info_at_dknet.org. Here is the summary list of the dkNET updates, community events and funding opportunities in May, 2021.
[Recorded Webinar and Slides are Available Now!] Join dkNET Webinar: Solving the Undiagnosed Diseases through Machine Learning
- 08:30pm April 26, 2021
- 1469 views
- Webinar, News
Come join us for a webinar presented by Dr. Zhandong Liu on Friday, May 14, 2021 to learn about solving the Undiagnosed Diseases through Machine Learning!
Come meet the dkNET team at Experimental Biology 2021!
- 11:33am April 21, 2021
- 1024 views
- News
The dkNET team will be attending the Experimental Biology 2021 from April 27-30 2021! Stop by our virtual booth to learn more about our new features and funding opportunities. We would also love to hear your feedback about our new portal so we can continue to improve our service to you!
New version of preprint released from the dkNET team: A tool for assessing alignment of biomedical data repositories with open, FAIR, citation and trustworthy principles
Congratulations! dkNET Principal Investigator Dr. Maryann Martone and collaborators Drs. Fiona Murphy and Michael Bar-Sinai released a new version of the preprint "A tool for assessing alignment of biomedical data repositories with open, FAIR, citation and trustworthy principles" in bioRxiv! Learn about this helpful new tool for evaluating how well repositories support Open, FAIR, Citable and Trustworthy (OFCT) data!
dkNET community events and announcements in April, 2021
- 10:05pm April 8, 2021
- 972 views
- News, Event, Funding Opportunity
dkNET provides updates on activities of interest to the NIDDK-supported community. You could keep up to date on these activities through our Twitter feed @dkNET_info, through our Community Calendar, or through dkNET e-mail list. If you have an event or funding opportunities you'd like to advertise, please contact us info_at_dknet.org. Here is the summary list of the dkNET updates, community events and funding opportunities in April, 2021.
[Recorded Webinar and Slides Are Available Now!] Join dkNET Webinar: Multi-Omics Data Integration for Phenotype Prediction of Type-1 Diabetes
- 02:22pm March 17, 2021
- 1559 views
- News, Webinar
Come join us for a webinar presented by the dkNET Pilot Program in Bioinformatics Awardee, Dr. Wei Zhang, on Friday, April 9, 2021 to learn about bioinformatics techniques of multi-omics data integration for phenotype prediction of type 1 diabetes in TEDDY project!
dkNET team @the(Sugar)Science Facebook live!
Thanks for the invitation from the(Sugar)Science! It was our pleasure to have an opportunity to introduce the dkNET resources to the Type 1 Diabetes researcher community via Facebook live on February 19, 2021.
dkNET community events and announcements in March, 2021
- 11:24pm March 5, 2021
- 1286 views
- News, Event, Funding Opportunity
dkNET provides updates on activities of interest to the NIDDK-supported community. You could keep up to date on these activities through our Twitter feed @dkNET_info, through our Community Calendar, or through dkNET e-mail list. If you have an event or funding opportunities you'd like to advertise, please contact us info_at_dknet.org. Here is the summary list of the dkNET updates, community events and funding opportunities in March, 2021.
[Recorded Webinar and Slides Are Available Now!] Join dkNET Webinar: Temporal Plasma Metabolome And Gut Microbiome In An Early-Childhood Study Of Type 1 Diabetes
- 11:09am March 2, 2021
- 1094 views
- News, Webinar
Come join us for a webinar presented by the dkNET Pilot Program in Bioinformatics Awardee, Dr. Qian Li, on Friday, March 12, 2021 to learn about Temporal Plasma Metabolome And Gut Microbiome In An Early-Childhood Study Of Type 1 Diabetes!
nPOD Launched RRIDs for All Biosamples!
- 04:42pm March 1, 2021
- 815 views
- News, Rigor and Reproducibility
The RRID team has been collaborating with the Network for Pancreatic Organ donors with Diabetes(nPOD) working on identifying biosamples. Last week nPOD launched RRIDs for all nPOD biosamples at their annual meeting! The RRIDs are based on the public, non-personally identifiable information submitted to NCBI/EBI biosamples databases. Now researchers can find RRIDs for nPOD biosamples and know who else published data from the same donors!
[Recorded Webinar and Slides are Available Now!] Join dkNET Webinar: Population-Based Approaches to Investigate Endocrine Communication on Feb. 26
- 10:32am February 16, 2021
- 2285 views
- News, Webinar
Come join us for a webinar presented by the dkNET Pilot Program in Bioinformatics Awardee, Dr. Marcus Seldin, on Friday, February 26, 2021 to learn about population-based approaches to investigate endocrine communication!
dkNET community events and announcements in February, 2021
- 03:12pm February 1, 2021
- 706 views
- News, Event, Funding Opportunity
dkNET provides updates on activities of interest to the NIDDK-supported community. You could keep up to date on these activities through our Twitter feed @dkNET_info, through our Community Calendar, or through dkNET e-mail list. If you have an event or funding opportunities you'd like to advertise, please contact us info_at_dknet.org. Here is the summary list of the dkNET updates, community events and funding opportunities in February, 2021.
New Preprint Released from dkNET team: Alignment of biomedical data repositories with open, FAIR, citable and trust-worthy principles
dkNET Principal Investigator Dr. Maryann Martone and collaborators Drs. Fiona Murphy and Michael Bar-Sinai released a new preprint "Alignment of biomedical data repositories with open, FAIR, citable and trust-worthy principles" in bioRxiv! Learn about this helpful new tool for evaluating how well repositories support Open, FAIR, Citable and Trustworthy (OFCT) data!
[Recorded Webinar and Slides Are Available Now!] Join dkNET Webinar - NPOD Nanotomy: Large-Scale Electron Microscopy Database For Human Type 1 Diabetes
- 10:48am January 20, 2021
- 1106 views
- News, Webinar
Come join us for a webinar presented by Dr. Ben N. G. Giepmans on Friday, February 12, 2021 to learn more about the technique and the recent database of Nanotomy (http://www.nanotomy.org) of human pancreas tissue obtained from the Network for Pancreatic Organ Donors (nPOD) with Diabetes!
[Recorded Webinar and Slides Are Available Now!] Join dkNET Webinar: FAIR Data & Software In The Research Life Cycle
- 03:07pm January 11, 2021
- 1148 views
- News, Webinar
Good data stewardship is the cornerstone of knowledge, discovery, and innovation in research. The FAIR Data Principles address data creators, stewards, software engineers, publishers, and others to promote maximum use of research data. The principles can be used as a framework for fostering and extending research data services. Come join us for a webinar presented by Christopher Erdmann on Friday, January 22, 2021 to learn more about FAIR principles. Practical examples of how FAIR is applied will be provided along the way!
dkNET community events and announcements in January, 2021
- 09:08pm January 5, 2021
- 481 views
- News, Event, Funding Opportunity
dkNET provides updates on activities of interest to the NIDDK-supported community. You could keep up to date on these activities through our Twitter feed @dkNET_info, through our Community Calendar, or through dkNET e-mail list. If you have an event or funding opportunities you'd like to advertise, please contact us info_at_dknet.org. Here is the summary list of the dkNET updates, community events and funding opportunities in January, 2021.
dkNET community events and announcements in December, 2020
- 12:51am December 11, 2020
- 695 views
- News, Event, Funding Opportunity
dkNET provides updates on activities of interest to the NIDDK-supported community. You could keep up to date on these activities through our Twitter feed @dkNET_info, through our Community Calendar, or through dkNET e-mail list. If you have an event or funding opportunities you'd like to advertise, please contact us info_at_dknet.org. Here is the summary list of the dkNET updates, community events and funding opportunities in December, 2020.
Join dkNET Team! We're looking for a Community Liaison / Outreach Coordinator!
dkNET has an open position for a Community Liaison to provide community outreach and lead engagement with the scientific community. This position will support a range of activities linked to community-dkNET partnerships, researcher engagement and knowledge networking. Apply it now and come join our team!
Come meet the dkNET team at ASCB/EMBO Annual Meeting Cell Bio Virtual 2020!
The dkNET team will be attending the ASCB/EMBO Annual Meeting Cell Bio Virtual 2020 from December 2-16, 2020! Stop by our virtual booth to learn more about our new features and funding opportunities. We would also love to hear your feedback about our new portal so we can continue to improve our service to you!
Join dkNET Webinar - Vivli: A Global Clinical Trials Data Sharing Platform
- 02:46pm November 30, 2020
- 1138 views
- News, Webinar
Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform. Vivli's focus is on sharing individual participant-level data from completed clinical trials to serve the entire the scientific community and a diverse group of stakeholders including industry, academic institutions, government and non-profits. The Vivli platform includes an independent data repository, in-depth search engine and a secure research environment. Come join us for a webinar presented by Dr. Ida Sim on Friday, December 11, 2020 to learn more about this useful tool!
[Recorded Webinar And Slides Are Available Now!] Join dkNET Webinar - FAIR Data Require Better Metadata: The Case for CEDAR
- 01:57am November 4, 2020
- 1206 views
- News, Webinar
When a biomedical scientist needs to upload her data and enter corresponding metadata into a repository, she is faced with a formidable task. Not only does she need to navigate and fill out many forms to enter (and re-enter!) information, and make sure everything is cross-referenced correctly, but the metadata frequently end up stored in an ad hoc manner, in a non-standard format, and using non-standard terminology. As a result, finding or reusing the metadata, or understanding the underlying experiments, becomes extremely hard, if not impossible. But when the scientist uses CEDAR, the tools can make describing laboratory studies or metadata for any other biomedical content much easier. Come join us for a webinar presented by Dr. Mark Musen on Friday, November 13, 2020 to learn more about this useful tool!
dkNET community events and announcements in November, 2020
- 01:21am November 4, 2020
- 1673 views
- News, Event, Funding Opportunity
dkNET provides updates on activities of interest to the NIDDK-supported community. You could keep up to date on these activities through our Twitter feed @dkNET_info, through our Community Calendar, or through dkNET e-mail list. If you have an event or funding opportunities you'd like to advertise, please contact us info_at_dknet.org. Here is the summary list of the dkNET updates, community events and funding opportunities in November, 2020.
Congratulations to Dr. I Burak Ozyurt for winning the 2nd place of the 8th BioASQ Challenge (Task 8b)
- 01:00am November 4, 2020
- 4526 views
- News
Congratulations to the dkNET team member Dr. I Burak Ozyurt for winning the 2nd place of the 8th BioASQ Challenge (Task 8b: Biomedical Semantic QA). BioASQ is a challenge on large-scale biomedical semantic indexing and question answering.
[Recorded Webinar And Slides Are Available Now!] Join dkNET Webinar: Illuminating The Druggable Genome With Pharos on October 23, 2020
- 01:55pm October 16, 2020
- 1279 views
- News, Webinar
Pharos is an integrated web-based informatics platform for the analysis of data aggregated by the Illuminating the Druggable Genome (IDG) Knowledge Management Center, an NIH Common Fund initiative. Pharos integrates information about understudied proteins to help researchers easily access it, catalyze their own research and find new proteins that may be of interest. Come join us for a webinar presented by Dr. Tudor Oprea on Friday, October 23, 2020 to learn more about this useful tool!
Congratulations to Dr. Neil McKenna on Signaling Pathways Project being highlighted in the BCM news!
Congratulations! dkNET Hypothesis Center collaborator - Signaling Pathways Project (SPP) team Dr. Neil McKenna and colleagues have published a paper "Consensus transcriptional regulatory networks of coronavirus-infected human cells" in Nature Scientific Data and this COVID-19 research has been highlighted in the BCM news in October, 2020!
dkNET community events and announcements in October, 2020
- 03:54pm October 13, 2020
- 815 views
- News, Event, Funding Opportunity
dkNET provides updates on activities of interest to the NIDDK-supported community. You could keep up to date on these activities through our Twitter feed @dkNET_info, through our Community Calendar, or through dkNET e-mail list. If you have an event or funding opportunities you'd like to advertise, please contact us info_at_dknet.org. Here is the summary list of the dkNET updates, community events and funding opportunities in October, 2020.
[Recorded webinar and slides are available now!] Join dkNET Webinar "Creating And Sustaining A FAIR Biomedical Data Ecosystem" on Oct. 9
- 09:48pm September 29, 2020
- 1389 views
- News, Webinar
Come join us for a dkNET webinar "Creating And Sustaining A FAIR Biomedical Data Ecosystem" presented by Dr. Susan Gregurick, Associate Director of Data Science and Director, Office of Data Science Strategy at the National Institutes of Health on Friday, Oct. 9, 2020 , 11 am - 12 pm PDT!
Congratulations! SPP team published a paper "Consensus transcriptional regulatory networks of coronavirus-infected human cells" in Nature Scientific Data!
Congratulations! Our collaborator - Signaling Pathways Project (SPP) team Dr. Scott Ochsner and Dr. Neil McKenna have published a paper "Consensus transcriptional regulatory networks of coronavirus-infected human cells" in Nature Scientific Data!
Research Resource Identifiers (RRID) mentioned in the Article "When antibodies mislead: the quest for validation" published in Nature Technology Features!
"Antibodies don’t always do what it says on the tin. Test for true signals before you start your experiment!" A new article titled "When antibodies mislead: the quest for validation", written by Monya Baker and published in Nature Technology Feature, mentioned the importance of including RRIDs for antibodies in research articles. RRIDs can help identify antibody used! RRID project is led by Dr. Anita Bandrowski and collaborated with dkNET, SciCrunch, and Neuroscience Information Framework.
dkNET community events and announcements in September, 2020
- 06:10am September 2, 2020
- 743 views
- News, Event, Funding Opportunity
dkNET provides updates on activities of interest to the NIDDK-supported community. You could keep up to date on these activities through our Twitter feed @dkNET_info, through our Community Calendar, or through dkNET e-mail list. If you have an event or funding opportunities you'd like to advertise, please contact us info_at_dknet.org. Here is the summary list of the dkNET updates, community events and funding opportunities in September 2020.
dkNET community events and announcements in August, 2020
- 03:33pm August 14, 2020
- 1008 views
- News, Event, Funding Opportunity
dkNET provides updates on activities of interest to the NIDDK-supported community. You could keep up to date on these activities through our Twitter feed @dkNET_info, through our Community Calendar, or through dkNET e-mail list. If you have an event or funding opportunities you'd like to advertise, please contact us info_at_dknet.org. Here is the summary list of the dkNET updates, community events and funding opportunities in August 2020.
Congrautlations to the dkNET team Dr. Chun-Nan Hsu and co-authors on the new preprint "Antibody Watch: Text Mining Antibody Specificity from the Literature"!
Congratulations to Dr. Chun-Nan Hsu and co-authors from the dkNET team, RRID team, FAIR Data Informatics Lab at University of California San Diego, and collaborators at National Central University in Taiwan on publishing a new preprint "Antibody Watch: Text Mining Antibody Specificity from the Literature"! The preprint can be downloaded at https://arxiv.org/abs/2008.01937
dkNET community events and announcements in July, 2020
- 10:00am July 2, 2020
- 885 views
- News, Event, Funding Opportunity
dkNET provides updates on activities of interest to the NIDDK-supported community. You could keep up to date on these activities through our Twitter feed @dkNET_info, through our Community Calendar, or through dkNET e-mail list. If you have an event or funding opportunities you'd like to advertise, please contact us info_at_dknet.org. Here is the summary list of the dkNET updates, community events and funding opportunities in July 2020.
[Slides are available now!] Join RDA webinar "What do you really know about that antibody? Ask dkNET" on June 24, 2020
- 01:29pm June 17, 2020
- 1089 views
- News
dkNET Principal Investigator Dr. Maryann Martone will give a presentation "What do you really know about that antibody? Ask dkNET" at Research Data Alliance (RDA) "Ask me anything" webinar on June 24, 2020. This webinar will present the dkNET platform developed to help US researchers to comply with NIH mandates and policies. Participants will have the opportunity to learn about services and tools provided through dkNET and become familiar with both concepts of creating detailed research resource reports and producing authentication reports for NIH. Everyone is invited!
dkNET community events and announcements in June, 2020
- 03:26pm June 5, 2020
- 774 views
- News, Event, Funding Opportunity
dkNET provides updates on activities of interest to the NIDDK-supported community. You could keep up to date on these activities through our Twitter feed @dkNET_info, through our Community Calendar, or through dkNET e-mail list. If you have an event or funding opportunities you'd like to advertise, please contact us info_at_dknet.org. Here is the summary list of the dkNET updates, community events and funding opportunities in June 2020.
Congratulations! dkNET Principal Investigator Dr. Maryann Martone published a new article "The TRUST Principles for digital repositories" in Nature Scientific Data
- 03:12pm May 18, 2020
- 2250 views
- News
Dr. Maryann Martone, one the the dkNET principal investigators, has published a new article "The TRUST Principles for digital repositories" in Nature Scientific Data. The article describes a guiding principles to demostrate digital repository trustworthiness. The TRUST Principles provide a common framework to facilitate discussion and implementation of best practice in digital preservation by all stakeholders.
[Slides and tutorial are available now!] You are invited! Join Live Demo of the dkNET Signaling Pathways Project on May 15
- 10:02pm May 7, 2020
- 1518 views
- News
The dkNET Hypothesis Center Signaling Pathways Project (SPP) is a free, open source tool for bench scientists to generate research hypotheses using SPP consensomes and was used for the recent bioRxiv publication, A transcriptional regulatory atlas of coronavirus infection of human cells. In this webinar, the SPP project lead, Dr Neil McKenna, will describe a number of important facets of this study.
dkNET community events and announcements in May, 2020
- 11:13pm May 3, 2020
- 753 views
- News, Event, Funding Opportunity
dkNET provides updates on activities of interest to the NIDDK-supported community. You could keep up to date on these activities through our Twitter feed @dkNET_info, through our Community Calendar, or through dkNET e-mail list. If you have an event or funding opportunities you'd like to advertise, please contact us info_at_dknet.org. Here is the summary list of the dkNET updates, community events and funding opportunities in May 2020.
Congratulations! SPP preprint "A transcriptional regulatory atlas of coronavirus infection of human cells" is now on bioRXiv!
- 10:40pm May 3, 2020
- 1530 views
- News
Congratulations! Our collaborator - Signaling Pathways Project (SPP) team has released a preprint "A transcriptional regulatory atlas of coronavirus infection of human cells" on bioRXiv! Join dkNET Hypothesis Center - Signaling Pathways Project Live Demo on May 15 at 11 am PDT to learn more!
[Recorded webinar and slides are available now!] Join dkNET Webinar: A New Approach to the Study of Energy Balance and Obesity using CalR (CalRapp.org) on May 8, 2020
- 09:53pm April 27, 2020
- 1849 views
- News, Webinar
CalR (https://CalRapp.org, RRID:SCR_015849) is a web-based tool for analysis of experiments using indirect calorimetry to measure physiological energy balance. CalR simplifies the process to import raw data files, generate plots, and determine the most appropriate statistical tests for interpretation. Come join us for a webinar presented by Dr. Alexander Banks on Friday, May 8, 2020 to learn more about this useful tool!
[Recorded webinar and slides are available now!] Join dkNET Webinar: Addgene, The Nonprofit Plasmid Repository on April 24, 2020
Addgene’s mission is to accelerate research and discovery by improving access to useful research materials and information. We facilitate the sharing of high-quality scientific materials, research reproducibility, and open science by archiving and distributing DNA-based research reagents and associated data to scientists worldwide. Come join us for a webinar presented by Dr. Angela Abitua on Friday, April 24, 2020 to learn more about this useful resource!
The Signaling Pathways Project (SPP) Knowledgebase featured in PLOS Collections Blog in April, 2020!
- 11:16am April 14, 2020
- 1127 views
- News
dkNET Hypothesis Center - the Signaling Pathways Project (SPP) knowledgebase is featured in PLOS Collection Blog on April 14, 2020. Dr. Neil McKenna, Director of SPP, collaborated with the PLOS Collections and launched a new PLOS collection. Users can now connect SPP datasets with their associate PLOS article in the PLOS "'Omics of Cellular Signaling Pathways Collection".
[Postponed] Join dkNET Webinar Series: dkNET Hypothesis Center - Signaling Pathways Project Live Demo on April 17, 2020
The dkNET Hypothesis Center - Signaling Pathways Project (SPP) is a free, open source tool for bench scientists to generate research hypotheses using SPP consensomes, which are lists of genes ranked by their transcriptional responsiveness to signaling pathway nodes. In this webinar, Dr. Neil McKenna will host a hands-on demonstration of using SPP consensomes to generate research hypotheses in your research area of interest. No informatics training is assumed nor will be necessary.
dkNET community events and announcements in April, 2020
- 06:38pm March 31, 2020
- 564 views
- News, Event, Funding Opportunity
dkNET provides updates on activities of interest to the NIDDK-supported community. You could keep up to date on these activities through our Twitter feed @dkNET_info, through our Community Calendar, or through dkNET e-mail list. If you have an event or funding opportunities you'd like to advertise, please contact us info_at_dknet.org. Here is the summary list of the dkNET updates, community events and funding opportunities in April, 2020.
[Recorded webinar and slides are available now!] Join dkNET Webinar: Sharing Data and Other Resources from the Human Islet Research Network on Friday, Mar. 13, 2020 at 11am PDT
- 04:32pm March 10, 2020
- 1130 views
- News, Webinar
The Human Islet Research Network (HIRN) connects many of the world’s leading scientists and laboratories together to address essential questions related to the loss of functional human beta cell mass in Type 1 Diabetes. Come join us for a webinar presented by Dr. John Kaddis on Friday, March 13, 2020 at 11am PDT to learn more about the services and resources available through HIRN!
dkNET community events and announcements in March, 2020
- 04:24pm March 3, 2020
- 710 views
- News, Event, Funding Opportunity
dkNET provides updates on activities of interest to the NIDDK-supported community. You could keep up to date on these activities through our Twitter feed @dkNET_info, through our Community Calendar, or through dkNET e-mail list. If you have an event or funding opportunities you'd like to advertise, please contact us info_at_dknet.org. Here is the summary list of the dkNET updates, community events and funding opportunities in March, 2020.
Congratulations to Dr. Chun-Nan Hsu from the dkNET team for publishing a new paper in Computing in Science & Engineering
Dr. Chun-Nan Hsu from the dkNET team has published a new paper "Comparing the Use of Research Resource Identifiers and Natural Language Processing for Citation of Databases, Software, and Other Digital Artifacts" in the special issue of Computer in Science & Engineering (CiSE) on Software and Data Citation! Download the paper at https://ieeexplore.ieee.org/document/8897047
Congratulations! The SPP team Drs. Ochsner and McKenna have published a paper in Thyroid!
dkNET is partnering with the Signaling Pathways Project (SPP) knowledge base to create a powerful new meta-analysis platform for FAIR 'omics data. The SPP team Drs. Ochsner and McKenna have published a new paper "No Dataset Left Behind: Mechanistic Insights into Thyroid Receptor Signaling Through Transcriptomic Consensome Meta-Analysis" in Thyroid! Download the paper at https://www.ncbi.nlm.nih.gov/pubmed/31910096
[Recorded webinar and slides are available now!] Join dkNET Webinar: The Type 2 Diabetes Knowledge Portal on Friday, February 28, 2020 at 11am PT
- 01:57pm February 21, 2020
- 1133 views
- News, Webinar
The Type 2 Diabetes Knowledge Portal (T2DKP), produced by the Accelerating Medicines Partnership in Type 2 Diabetes (AMP T2D), is an open-access resource that aims to facilitate the translation of genomic data into actionable knowledge for understanding and treatment of T2D and its complications. Come join us for a webinar presented by Drs. Noël Burtt and Jason Flannick on Friday, February 28, 2020 at 11am PT to learn more about this useful resource!
dkNET community events and announcements in February, 2020
- 03:48pm February 4, 2020
- 710 views
- News, Event, Funding Opportunity
dkNET provides updates on activities of interest to the NIDDK-supported community. You could keep up to date on these activities through our Twitter feed @dkNET_info, through our Community Calendar, or through dkNET e-mail list. If you have an event or funding opportunities you'd like to advertise, please contact us info_at_dknet.org. Here is the summary list of the dkNET updates, community events and funding opportunities in February, 2020.
[Recorded Webinar and Slides Are Available Now!] Join dkNET Webinar: The NIH Mutant Mouse Resource and Research Centers (MMRRC) Consortium on Friday, February 14, 2020 at 11am PT
- 02:05pm January 31, 2020
- 1035 views
- News, Webinar
The Mutant Mouse Resource and Research Center (MMRRC) Program is the nation’s primary mutant mouse archive and distribution repository system. Join us on Friday, February 14, 2020 at 11am for a webinar presented by Dr. Kent Lloyd to learn what services and resources provided by MMRRC, how to find mouse models of interest to your research area, and how to deposit your mouse models to MMRRC!
[Recorded Webinar and Slides Are Available Now!] Join dkNET Webinar: The Mouse Metabolic Phenotyping Centers: Services And Data on Friday, January 24, 2020 at 11am PT
- 05:35pm January 10, 2020
- 1323 views
- News, Webinar
The Mouse Metabolic Phenotyping Centers (MMPC) is a National Institutes of Health-Sponsored resource that provides experimental testing services to scientists studying diabetes, obesity, diabetic complications, and other metabolic diseases in mice. This talk will review the structure of the MMPC, the services it provides and the data generated by the consortium for public use at MMPC.
dkNET Funding Opportunity: 2020 dkNET Summer of Data Student Internship
- 05:30pm January 10, 2020
- 342 views
- News, Funding Opportunity
The intent of this program is to enable students, over a 6-week period, to use the dkNET portal to support their own research or that of their PI’s. The intent is they will learn best practices to enhance rigor and reproducibility and learn the basics of good data management by following the FAIR (Findable, Accessible, Interoperable, Reusable) data principles. Application deadline: April 17, 2020.
dkNET Funding Opportunity: New Investigator Pilot Program in Bioinformatics
- 05:23pm January 10, 2020
- 622 views
- News, Funding Opportunity
Are you an early stage or new investigator seeking to apply computationally-intensive methods to diabetes, endocrinology, and metabolic diseases research? Check out the dkNET New Investigator Pilot Program in bioinformatics! Letter of Intent Due on Jan. 14, 2020.
dkNET community events and announcements in January, 2020
- 06:00pm December 20, 2019
- 663 views
- News, Event, Funding Opportunity
dkNET provides updates on activities of interest to the NIDDK-supported community. You could keep up to date on these activities through our Twitter feed @dkNET_info, through our Community Calendar, or through dkNET e-mail list. If you have an event or funding opportunities you'd like to advertise, please contact us info_at_dknet.org. Here is the summary list of the dkNET updates, community events and funding opportunities in January, 2020.
dkNET community events and announcements in December, 2019
- 07:37pm December 2, 2019
- 1052 views
- News, Events, Funding opportunity
dkNET provides updates on activities of interest to the NIDDK-supported community. You could keep up to date on these activities through our Twitter feed @dkNET_info, through our Community Calendar, or through dkNET e-mail list. If you have an event or funding opportunities you'd like to advertise, please contact us info_at_dknet.org. Here is the summary list of the dkNET updates, community events and funding opportunities in December, 2019.
Come meet the dkNET team at ASCB/EMBO 2019 in Washington DC!
- 04:29pm November 19, 2019
- 1159 views
- News
The dkNET team will be attending the ASCB/EMBO Annual Meeting in Washington DC from December 7-11, 2019! Stop by booth#232 to learn more about our new features. We would also love to hear your feedback about our new portal so we can continue to improve our service to you!
dkNET community events and announcements in November, 2019
- 03:57pm November 6, 2019
- 696 views
- News, Events, Funding opportunity
dkNET provides updates on activities of interest to the NIDDK-supported community. You could keep up to date on these activities through our Twitter feed @dkNET_info, through our Community Calendar, or through dkNET e-mail list. If you have an event or funding opportunities you'd like to advertise, please contact us info_at_dknet.org. Here is the summary list of the dkNET updates, community events and funding opportunities in November, 2019.
Join dkNET Webinar: The Signaling Pathways Project, an integrated ‘omics knowledgebase for mammalian cellular signaling pathways on Friday, November 22, 2019 at 11am PST
In this webinar, we will introduce dkNET Hypothesis Center - the Signaling Pathways Project (SPP) knowledgebase, a hub for big data and hypothesis generation that will allow researchers to extract information across different transcriptomic and ChIP-Seq datasets. We will demonstrate several SPP use cases, as well as take questions from the audience about specific aspects of SPP. Dial-in information: https://uchealth.zoom.us/meeting/register/837179770adf7fbddc2040ba88984b7b
Congratulations! The Signaling Pathways Project Paper is now live at Nature Scientific Data
dkNET is partnering with the Signaling Pathways Project (SPP) knowledge base to create a powerful new meta-analysis platform for FAIR 'omics data.The Signaling Pathways Project Paper is now live at Nature Scientific Data! Download the paper at: https://www.nature.com/articles/s41597-019-0193-4
dkNET New Features Make It Easier to Connect to Authentication Reports from Resource Reports
- 05:31pm October 28, 2019
- 774 views
- New feature, News, Tutorial
Based on the feedback from users, we implemented new features allowing users to (1) add cell lines or antibodies to Authentication Reports directly from Resource Reports (2) easily access to Authentication Reports service from Resource Reports.
dkNET community events and announcements in October, 2019
- 04:09pm October 7, 2019
- 1395 views
- News, Event, Funding opportunity
dkNET provides updates on activities of interest to the NIDDK-supported community. You could keep up to date on these activities through our Twitter feed @dkNET_info, through our Community Calendar, or through dkNET e-mail list. If you have an event or funding opportunities you'd like to advertise, please contact us info_at_dknet.org. Here is the summary list of the dkNET updates, community events and funding opportunities in October, 2019.
dkNET community events and announcements in September, 2019
- 06:54pm August 29, 2019
- 1210 views
- News, Event, Funding opportunity
dkNET provides updates on activities of interest to the NIDDK-supported community. You could keep up to date on these activities through our Twitter feed @dkNET_info, through our Community Calendar, or through dkNET e-mail list. If you have an event or funding opportunities you'd like to advertise, please contact us info_at_dknet.org. Here is the summary list of the dkNET updates, community events and funding opportunities in September, 2019.
About
The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant 2U24DK097771-09.
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Email: info_at_ dknet.org
