dkNET | Searching for SCR_008007 in Community Resources

Snippet view Table view

Can't find the RRID you're searching for? X

Click the to add this resource to a Collection

9 Results - per page

Show More Columns | Download 9 Result(s)

Resource Name Sort Ascending Sort Descending	Proper Citation Sort Ascending Sort Descending	Abbreviations Sort Ascending Sort Descending	Resource Type Sort Ascending Sort Descending	Description	Keywords Sort Ascending Sort Descending	Resource Relationships Sort Ascending Sort Descending	Related Condition Sort Ascending Sort Descending	Funding Sort Ascending Sort Descending	Defining Citation Sort Ascending Sort Descending	Availability	Alternate IDs	Alternate URLs	Old URLs	Resource ID	Synonyms Sort Ascending Sort Descending	Record Last Update Sort Ascending Sort Descending	Mentions Count Sort Ascending Sort Descending
Gemma Resource Report Resource Website 1000+ mentions	Gemma (RRID:SCR_008007)	Gemma	data or information resource, database	Resource for reuse, sharing and meta-analysis of expression profiling data. Database and set of tools for meta analysis, reuse and sharing of genomics data. Targeted at analysis of gene expression profiles. Users can search, access and visualize coexpression and differential expression results.	chip, microarray, functional genomics, gene expression, coexpression, differential expression, FASEB list	is used by: NIF Data Federation is used by: Integrated Data Annotation is listed by: Debian is listed by: SoftCite is related to: Gene Ontology is related to: Gene Expression Omnibus is related to: Phenocarta has parent organization: University of British Columbia; British Columbia; Canada is parent organization of: Neurocarta		Canadian Foundation for Innovation ; Canadian Institutes for Health Research ; Michael Smith Foundation for Health Research ; NIGMS GM076990	PMID:22782548	Free, Freely available	nif-0000-08127, r3d100012747	https://sources.debian.org/src/gemma/, https://doi.org/10.17616/R36R54, https://doi.org/10.17616/R36R54		SCR_008007		2026-09-12 01:01:57	1145
Neurocarta Resource Report Resource Website	Neurocarta (RRID:SCR_000617)	Neurocarta	data or information resource, database	THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. Neurocarta is a knowledgebase that consolidates information on genes and phenotypes across multiple resources and allows tracking and exploring of the associations. The system enables automatic and manual curation of evidence supporting each association, as well as user-enabled entry of their own annotations. Phenotypes are recorded using controlled vocabularies such as the Disease Ontology to facilitate computational inference and linking to external data sources. The gene-to-phenotype associations are filtered by stringent criteria to focus on the annotations most likely to be relevant. Neurocarta is constantly growing and currently holds more than 30,000 lines of evidence linking over 6,800 genes to 1,800 different phenotypes. Neurocarta is a one-stop shop for researchers looking for candidate genes for any disorder of interest. In Neurocarta, they can review the evidence linking genes to phenotypes and filter out the evidence they're not interested in. In addition, researchers can enter their own annotations from their experiments and analyze them in the context of existing public annotations. Neurocarta's in-depth annotation of neurodevelopmental disorders makes it a unique resource for neuroscientists working on brain development.	gene, phenotype, curation, annotation, candidate gene, neuroscientist, brain development, brain, tool	is related to: Human Phenotype Ontology is related to: MPO is related to: Human Disease Ontology has parent organization: Gemma	Neurodevelopmental disease		PMID:23442263	THIS RESOURCE IS NO LONGER IN SERVICE	nlx_151502			SCR_000617		2026-09-12 01:01:20	0
Gene Ontology Resource Report Resource Website 10000+ mentions	Gene Ontology (RRID:SCR_002811)	GO	consortium, data or information resource, knowledge environment resource, organization portal, portal, project portal	Computable knowledge regarding functions of genes and gene products. GO resources include biomedical ontologies that cover molecular domains of all life forms as well as extensive compilations of gene product annotations to these ontologies that provide largely species-neutral, comprehensive statements about what gene products do. Used to standardize representation of gene and gene product attributes across species and databases.	gene, product, annotation, molecular, function, cellular, biological, role, database, query, obo, gold standard, bio.tools, FASEB list	is used by: NIF Data Federation is used by: GreenPhylDB is used by: LIPID MAPS Proteome Database is used by: Aging Portal is used by: ChannelPedia is used by: Open PHACTS is used by: CoPub is used by: PhenoGO is used by: Database for Annotation Visualization and Integrated Discovery is used by: MitoMiner is used by: dcGO is used by: Pathway Analysis Tool for Integration and Knowledge Acquisition is used by: barleyGO is used by: SynGO is used by: Functional Annotation is used by: SwissLipids is listed by: BioPortal is listed by: OBO is listed by: OMICtools is listed by: bio.tools is listed by: Debian is affiliated with: Mouse Genome Informatics: The Gene Ontology Project is related to: GenNav is related to: SynaptomeDB is related to: High-Throughput GoMiner is related to: Onto-Design is related to: OnEx - Ontology Evolution Explorer is related to: Avadis is related to: GONUTS is related to: PiNGO is related to: Automated Microarray Pipeline is related to: categoryCompare is related to: globaltest is related to: Semantic Measures Library is related to: WegoLoc is related to: AnimalTFDB is related to: MEME Suite - Motif-based sequence analysis tools is related to: Arabidopsis Hormone Database is related to: DAVID is related to: Arabidopsis thaliana Protein Interactome Database is related to: TM4 Microarray Software Suite - TIGR MultiExperiment Viewer is related to: pSTIING is related to: GoMiner is related to: FunSimMat is related to: GeneSpeed- A Database of Unigene Domain Organization is related to: Centre for Modeling Human Disease Gene Trap Resource is related to: Patterns of Gene Expression in Drosophila Embryogenesis is related to: Babelomics is related to: BioPerl is related to: GeneCruiser is related to: GOLEM An interactive, graphical gene-ontology visualization, navigation, and analysis tool is related to: GOToolBox Functional Investigation of Gene Datasets is related to: Cotton EST Database is related to: MouseNET is related to: PLANTTFDB is related to: T-profiler is related to: Physico-Chemical Process is related to: Integrated Molecular Interaction Database is related to: SEGS is related to: GOCat is related to: Quantitative Enrichment of Sequence Tags is related to: Neural-Immune Gene Ontology is related to: INMEX is related to: StRAnGER is related to: QuickGO is related to: Repository of molecular brain neoplasia data is related to: Cardiovascular Gene Ontology Annotation Initiative is related to: PANTHER is related to: Short Time-series Expression Miner (STEM) is related to: DATFAP is related to: GORetriever is related to: Gene Ontology Browsing Utility (GOBU) is related to: GeneTools is related to: GOSlimViewer is related to: go-moose is related to: Network Ontology Analysis is related to: Onto-Compare is related to: Onto-Express is related to: OntoVisT is related to: STRAP is related to: CGAP GO Browser is related to: COBrA is related to: Gene Class Expression is related to: GeneInfoViz is related to: GOfetcher is related to: GoFish is related to: GOProfiler is related to: GOanna is related to: Manatee is related to: Pandora - Protein ANnotation Diagram ORiented Analysis is related to: TAIR Keyword Browser is related to: Wandora is related to: GOTaxExplorer is related to: Onto-Miner is related to: Onto-Translate is related to: ToppGene Suite is related to: DBD - Slim Gene Ontology is related to: ONTO-PERL is related to: Blip: Biomedical Logic Programming is related to: OWL API is related to: CLENCH is related to: BiNGO: A Biological Networks Gene Ontology tool is related to: CateGOrizer is related to: FuSSiMeG: Functional Semantic Similarity Measure between Gene-Products is related to: ProteInOn is related to: GeneMerge is related to: GraphWeb is related to: ClueGO is related to: CLASSIFI - Cluster Assignment for Biological Inference is related to: GOHyperGAll is related to: FuncAssociate: The Gene Set Functionator is related to: GOdist is related to: FuncExpression is related to: FunCluster is related to: FIVA - Functional Information Viewer and Analyzer is related to: GARBAN is related to: GOEx - Gene Ontology Explorer is related to: SGD Gene Ontology Slim Mapper is related to: GOArray is related to: SNPsandGO is related to: GoSurfer is related to: GOtcha is related to: MAPPFinder is related to: GoAnnotator is related to: MetaGeneProfiler is related to: OntoGate is related to: ProfCom - Profiling of complex functionality is related to: SerbGO is related to: SOURCE is related to: Ontologizer is related to: THEA - Tools for High-throughput Experiments Analysis is related to: Generic GO Term Mapper is related to: GREAT: Genomic Regions Enrichment of Annotations Tool is related to: GoBean - a Java application for Gene Ontology enrichment analysis is related to: TXTGate is related to: GO-Module is related to: IT-GOM: Integrated Tool for IC-based GO Semantic Similarity Measures is related to: G-SESAME - Gene Semantic Similarity Analysis and Measurement Tools is related to: MalaCards is related to: FSST - Functional Similarity Search Tool is related to: Expression Profiler is related to: GOChase is related to: GoPubMed is related to: Whatizit is related to: REViGO is related to: WEGO - Web Gene Ontology Annotation Plot is related to: Blast2GO is related to: InterProScan is related to: PubSearch is related to: TrED is related to: CharProtDB: Characterized Protein Database is related to: VirHostNet: Virus-Host Network is related to: Pathbase is related to: GO Online SQL Environment (GOOSE) is related to: Neurobehavior Ontology is related to: InterSpecies Analysing Application using Containers is related to: KOBAS is related to: ConceptWiki is related to: GeneTerm Linker is related to: Bioconductor is related to: ErmineJ is related to: Gene Ontology For Functional Analysis (GOFFA) is related to: MGI GO Browser is related to: Comparative Toxicogenomics Database (CTD) is related to: GOEAST - Gene Ontology Enrichment Analysis Software Toolkit is related to: Ontology Lookup Service is related to: LexGrid is related to: WebGestalt: WEB-based GEne SeT AnaLysis Toolkit is related to: g:Profiler is related to: OwlSim is related to: GOrilla: Gene Ontology Enrichment Analysis and Visualization Tool is related to: YeTFaSCo is related to: FastSemSim is related to: RamiGO is related to: AutismKB is related to: GeneCodis is related to: FunSpec is related to: FunNet - Transcriptional Networks Analysis is related to: PhenoM - Phenomics of yeast Mutants is related to: agriGO is related to: GOblet is related to: DynGO is related to: SeqExpress is related to: ProbeExplorer is related to: ECgene: Gene Modeling with Alternative Splicing is related to: Organelle DB is related to: Gemma is related to: Candidate Genes to Inherited Diseases is related to: Proteome Analyst PA-GOSUB is related to: Network Analysis, Visualization and Graphing TORonto is related to: GOstat is related to: Onto-Express To Go (OE2GO) is related to: Tk-GO is related to: EGAN: Exploratory Gene Association Networks is related to: Spotfire is related to: GOMO - Gene Ontology for Motifs is related to: GFINDer: Genome Function INtegrated Discoverer is related to: Generic GO Term Finder is related to: Agile Protein Interactomes DataServer is related to: AgingDB is related to: UBERON is related to: Algal Functional Annotation Tool is related to: gsGator is related to: Flash Gviewer is related to: Cerebellar Development Transcriptome Database is related to: PlantNATsDB - Plant Natural Antisense Transcripts DataBase is related to: EASE: the Expression Analysis Systematic Explorer is related to: PiGenome is related to: L2L Microarray Analysis Tool is related to: MeGO is related to: CELDA Ontology is related to: Diabetes Disease Portal is related to: MatrixDB is related to: Kidney and Urinary Pathway Knowledge Base is related to: MouseCyc is related to: Candida Genome Database is related to: Honey Bee Brain EST Project is related to: ECO is related to: FlyMine is related to: Gramene is related to: 3D-Interologs is related to: Biomine is related to: UniProtKB is related to: NCBI BioSystems Database is related to: EBIMed is related to: Coremine Medical is related to: EMAGE Gene Expression Database is related to: GeneMANIA is related to: Yeast Search for Transcriptional Regulators And Consensus Tracking is related to: GeneTrail is related to: Magic is related to: Mouse Genome Informatics (MGI) is related to: FlyBase is related to: InterPro is related to: InnateDB is related to: canSAR is related to: HPRD - Human Protein Reference Database is related to: CRCView is related to: Integrated Manually Extracted Annotation is related to: LegumeIP is related to: Renal Disease Portal is related to: PhenoGO is related to: DOAF is related to: OBO is related to: biomaRt is related to: OncoboxPD is parent organization of: AmiGO is parent organization of: GOlr is parent organization of: RefGenome is parent organization of: OBO-Edit is parent organization of: OWLTools is parent organization of: Gene Ontology Tools is parent organization of: Gene Ontology Extension is parent organization of: SO is parent organization of: go-db-perl is parent organization of: go-perl works with: topGO works with: DIANA-mirPath works with: GOnet is organization facet of: Alliance of Genome Resources		European Union QLRI-CT-2001-00015; European Union QLRI-CT-2001-0098; NHGRI P41 HG002273	PMID:23161678 PMID:10802651	Free, Freely available, Available for download	biotools:go, OMICS_02278, nif-0000-02915	http://bioportal.bioontology.org/ontologies/GO, https://bio.tools/go		SCR_002811	the Gene Ontology, GO, Gene Ontology Resource, Gene Ontology	2026-09-12 12:55:46	12993
SoftCite Resource Report Resource Website	SoftCite (RRID:SCR_024411)		data or information resource, knowledge base, portal, project portal, software resource	Gold standard dataset of software mentions in research publications. Provides dataset of annotated software mentions from full text academic literature in biomedicine and economics directly converted from published PDFs with reproducible infrastructure. Includes provenance, and is formatted for immediately usefulness in NLP. Useful for supervised learning at scale.	Gold standard dataset, software mentions, research publications, annotated software mentions, full text academic literature,	lists: ProteinPilot lists: ROCit lists: survivalROC lists: GIFT lists: PyWavelets lists: pRRophetic lists: GOplot lists: Rgdal lists: riskRegression lists: RNAfold lists: RNALocate lists: pyPCcazip lists: ScanProsite lists: RapGreen lists: ABySS lists: AMBER lists: ANNOVAR lists: ASAP lists: ASPicDB lists: AStalavista lists: ATSAS lists: Alien hunter lists: Adobe Photoshop lists: Affymetrix lists: Augustus lists: Argus lists: Adobe Illustrator lists: ART lists: AutoDock Vina lists: AutoDock lists: ANALYZE lists: BLASTClust lists: arrayQualityMetrics lists: BLASTN lists: BLASTX lists: BLASTP lists: Bowtie lists: Autogrid lists: BRB-ArrayTools lists: BEDTools lists: BWA lists: BioEdit lists: BRASS lists: Bioconductor lists: BioExtract lists: BaCelLo lists: BioMoby lists: Brain Extraction Tool lists: Bowtie 2 lists: BoxPlotR lists: biomaRt lists: BioPerl lists: CANGS lists: CFX Manager lists: CEAS lists: BlobFinder lists: CLC Genomics Workbench lists: BREAKDANCER lists: CASAVA lists: CLC Main Workbench lists: ClustalW lists: Clustal W2 lists: ComBat lists: CCP4 lists: Blender lists: Coot lists: CGView lists: COMSOL Multiphysics lists: CTFFIND lists: CalcuSyn lists: ChIPpeakAnno lists: Chimera lists: CVODE lists: DAVID lists: Cufflinks lists: caret lists: ClueGO lists: Cluster lists: Clocklab lists: DIANA-mirPath lists: Cytoscape lists: EMAN lists: E-Prime lists: DESeq2 lists: Definiens Developer XD lists: Eigensoft lists: EMBOSS lists: Ensembl lists: DIALIGN lists: Design-Expert lists: EndNote lists: CMAP lists: EEGLAB lists: CMap lists: Epi Info lists: FASTA lists: Ensembl Genome Browser lists: Epik lists: FACS lists: FCS Express lists: Flowlogic lists: FSL lists: FLASH lists: FATCAT lists: FastQC lists: G*Power lists: GOLD lists: FGENESH lists: FreeSurfer lists: FlowJo lists: GeneTools lists: Galaxy lists: GATK lists: ELDA lists: GraphPad lists: GRADEpro lists: Fiji lists: Gblocks lists: FigTree lists: GENIE lists: GBrowse lists: Gemma lists: GeneChip Operating Software lists: GeneMapper lists: GeneMarker lists: GenABEL lists: GenePattern lists: GraphPad Prism lists: GenePix Pro lists: Google lists: Genesis lists: Hologic lists: GeneSpring GX lists: GeneVenn lists: HaploReg lists: Google Scholar lists: HALO lists: Gwyddion lists: IMAGIC lists: HKL-2000 lists: Glide lists: Glimmer lists: I-TASSER lists: GenomeStudio lists: IMOD lists: Haploview lists: Hmmer lists: Hydra lists: IUPRED lists: HomeCageScan lists: Geneious lists: IGOR Pro lists: IMPUTE lists: Infernal lists: Image-Pro Plus lists: JASP lists: LSM Image Examiner lists: Imaris lists: Image Pro Plus lists: ImageQuant lists: ImageJ lists: Integrative Genomics Viewer lists: jcvi lists: InterProScan lists: KaleidaGraph lists: Ligprep lists: Heidelberg Eye Explorer lists: JMP lists: Ingenuity Pathways Knowledge Base lists: Leica QWin lists: JCB DataViewer lists: Jalview lists: LigandScout lists: Ingenuity Pathway Analysis lists: LabView lists: Kepler lists: MAFFT lists: Jmol lists: ImageScope lists: MACS lists: Maq lists: MUMmer lists: MATLAB lists: Mimics lists: MACH lists: MCODE lists: Mascot lists: Maestro lists: MSQuant lists: MediaWiki lists: MINC lists: MRIcron lists: MOE lists: ModFit LT lists: LIMMA lists: MassLynx lists: mitopred lists: MrBayes lists: MolProbity lists: MUSCLE lists: MutationAssessor lists: MaxQuant lists: Minitab lists: MODELLER lists: MetaboAnalyst lists: MedCalc lists: Origin lists: MPlus lists: MutationTaster lists: MuTect lists: Multi Gauge lists: NIA Array Analysis lists: NIH Image lists: Phenix lists: MycoBank lists: OpenClinica lists: Nexus lists: OMTools lists: NIS-Elements lists: PAST lists: NVivo lists: PRISM (Stanford database) lists: Metscape lists: PROCHECK lists: oligo lists: OpenEpi lists: Pathway Commons lists: Nanoparticle Tracking Analysis lists: Openlab lists: PLINK lists: PAUP lists: NONMEM lists: PREFAB lists: NetworkX lists: PeptideProphet lists: Primer Designer lists: PhyML lists: PASS lists: PyMOL lists: PSIPRED lists: PROFILER lists: PHYLIP lists: Phobius lists: Prime lists: Phyutility lists: Picard lists: ProteinProphet lists: Phaser lists: ProSAS lists: PostgreSQL lists: Primer-BLAST lists: ProteinLynx Global Server lists: QUANTO lists: Primer Express lists: Primer3Plus lists: ProtTest lists: ProbCons lists: Primer3 lists: Poretools lists: Protein preparation Wizard lists: QmRLFS-finder lists: PicTar lists: RevMan lists: Pipeline Pilot lists: QIIME lists: PRISMA lists: REDCap lists: RAxML lists: Proteome Discoverer lists: Research Randomizer lists: SPARTAN lists: SPSS lists: RNAstructure lists: Refmac lists: QuantPrime lists: Prodigal lists: RepeatModeler lists: Ringo lists: SQLite lists: SAGE lists: Rhinoceros lists: SAMTOOLS lists: SPAdes lists: RepeatMasker lists: SEDFIT lists: STATISTICA lists: RNAhybrid lists: SlideBook lists: STRUCTURE lists: SABmark lists: SPM lists: Stata lists: RStudio lists: SciPy lists: Scion Image lists: Simulink lists: TAGGER lists: TopHat lists: SAM lists: ShortRead lists: SIFT lists: SCAN lists: SignalP lists: Scopus lists: Strelka2 lists: Trans-ABySS lists: Statgraphics Centurion lists: T-Coffee lists: Statistical Analysis System lists: TargetScan lists: UCHIME lists: Sequencher lists: SigmaStat lists: UCSC Genome Browser lists: affy lists: Taverna lists: MBF BioScience: Stereo Investigator lists: Trimmomatic lists: Vmatch lists: WFU PickAtlas lists: SigmaPlot lists: X!Tandem lists: STAR lists: TASSEL lists: SyStat lists: WEBLOGO lists: UCSF Chimera lists: TreeView lists: pheatmap lists: WinWCP lists: microRNA.org lists: glmnet lists: Phenix.refine lists: BASE lists: beadarray lists: RMS lists: lumi lists: Web of Science lists: minfi lists: geNORM lists: WU-BLAST lists: WinBUGS lists: SPP lists: tRNAscan-SE lists: WebPlotDigitizer lists: qBasePLUS lists: Matplotlib lists: TreeBASE lists: pClamp lists: TBLASTN lists: igraph lists: V3D lists: survival lists: miRanda lists: piRNABank lists: topGO lists: NGmerge lists: OMNISEC lists: NOTUNG lists: OpenBUGS lists: Optimization Toolbox lists: ProgRes Capture Pro lists: Ocular lists: Umediation lists: Nano Measurer lists: PHYLDOG lists: VSEARCH lists: WinNonlin lists: WHONET lists: ToposPro lists: Treerecs lists: Agilent Seahorse Wave lists: SimPhy lists: TomoStudio lists: Mutation Assessor lists: Stem lists: SRAMP lists: CRISPResso2 lists: geepack lists: Evalue lists: DAGitty lists: FastMulRFS lists: ggridges lists: gamm4 lists: AutoRT lists: CopyKAT lists: Inference of CRISPR Edits lists: classInt lists: ASTRAL-Pro lists: maftools lists: mitml lists: CMplot lists: MetaPSICOV lists: LaCyTools lists: MADOKA lists: Kaplan Meier Plotter lists: IntFOLD lists: ModFOLD lists: lDDT has parent organization: University of Texas at Austin; Texas; USA		Sloan Foundation	DOI:10.1002/asi.24454	Free, Available for download, Freely available		https://github.com/softcite/softcite_dataset_v2, https://zenodo.org/record/7995565		SCR_024411	Software Citation	2026-09-12 01:00:47	0
NIF Data Federation Resource Report Resource Website 10+ mentions	NIF Data Federation (RRID:SCR_004834)	Data Federation	data or information resource, portal, service resource	Service that partners with the community to expose and simultaneously drill down into individual databases and data sets and return relevant content. This type of content, part of the so called hidden Web, is typically not indexed by existing web search engines. Every record links back to the originating site. In order for NIF to directly query these independently maintained databases and datasets, database providers must register their database or dataset with the NIF Data Federation and specify permissions. Databases are concept mapped for ease of sharing and to allow better understanding of the results. Learn more about registering your resource, http://neuinfo.org/nif_components/disco/interoperation.shtm Search results are displayed under the Data Federation tab and are categorized by data type and nervous system level. In this way, users can easily step through the content of multiple resources, all from the same interface. Each federated resource individually displays their query results with links back to the relevant datasets within the host resource. This allows users to take advantage of additional views on the data and tools that are available through the host database. The NIF site provides tutorials for each resource, indicated by the Professor Icon professor icon showing users how to navigate the results page once directed there through the NIF. Additionally, query results may be exported as an Excel document. Note: NIF is not responsible for the availability or content of these external sites, nor does NIF endorse, warrant or guarantee the products, services or information described or offered at these external sites. Integrated Databases: Theses virtual databases created by NIF and other partners combine related data indexed from multiple databases and combine them into one view for easier browsing. * Integrated Animal View * Integrated Brain Gene Expression View * Integrated Disease View * Integrated Nervous System Connectivity View * Integrated Podcasts View * Integrated Software View * Integrated Video View * Integrated Jobs * Integrated Blogs For a listing of the Federated Databases see, http://neuinfo.org/mynif/databaseList.php or refer to the Resources Listed by NIF Data Federation table below.	semantics, neuroscience, animal, annotation, antibody, biospecimen, brain activation foci, clinical trial, connectivity, dataset, disease, drug, grant, image, microarray, model, multimedia, negative data, pathway, people, plasmid, registry, software, brain region, cell, gene, molecule, multi-level, nervous system, nervous system function, model	uses: MNI Podcasts uses: Educational Resources in Neuroscience uses: Mind Hacks uses: BAMS Nested Regions uses: Indeed uses: NINDS Disorder Index uses: Drug Design Data Resource uses: PubMed Health uses: This Week In Science uses: Science Talk uses: BAMS Connectivity uses: Lady Scientist uses: Psychology Corner uses: Wired Science uses: CENtral Science uses: RetractionWatch.com uses: The Guardian: Science Weekly uses: H2SO4Hurts uses: 60-Second Mind uses: PLoS Blogs uses: Clarity resources uses: Open Source Brain uses: Diabetic Complications Consortium uses: Integrated Animals uses: Kawasaki Disease Dataset uses: EEGbase uses: Integrated Models uses: Lifespan Observations Database uses: NIF Web Services uses: NIF Blog uses: ATCC uses: Cerebellar Platform uses: Brain Machine Interface Platform uses: Rafael Yustes Laboratory uses: ASAP uses: NIH VideoCasting uses: NIDA Data Share uses: Neurofed uses: Candida Genome Database uses: Addgene uses: ASPGD uses: Glomerular Activity Response Archive uses: WikiPathways uses: AmiGO uses: NeuroMorpho.Org uses: Cell Centered Database uses: Integrated uses: Community Structure-Activity Resource uses: ClinicalTrials.gov uses: Ensembl uses: GeneNetwork uses: Avian Brain Circuitry Database uses: EcoCyc uses: Entrez Gene uses: Zebrafish Information Network (ZFIN) uses: Arredondo ANT fNIRS dataset1 uses: Grants.gov uses: T3DB uses: Simtk.org uses: PharmGKB uses: DrugBank uses: Aging Genes and Interventions Database uses: Gene Expression Nervous System Atlas uses: SumsDB uses: bioDBcore uses: BioNumbers uses: Gene Ontology uses: Temporal-Lobe: Hippocampal - Parahippocampal Neuroanatomy of the Rat uses: Gramene uses: Retina Project uses: HomoloGene uses: ArrayExpress uses: Journal of Visualized Experiments uses: Allen Mouse Brain Reference Atlas uses: Gene Weaver uses: Visiome Platform uses: Developmental Therapeutics Program uses: NeuroMab uses: WormBase uses: NeuronDB uses: Integrated Grants uses: studyforrest.org uses: BrainInfo uses: Mouse Phenome Database (MPD) uses: NCBI Taxonomy uses: NCBI Protein Database uses: Psychoactive Drug Screening Program Ki Database uses: Nuclear Receptor Signaling Atlas uses: Brede Database uses: NeuroImaging Tools and Resources Collaboratory (NITRC) uses: Mouse Genome Informatics Transgenes uses: Reactome uses: Cell Image Library (CIL) uses: BAMS Cells uses: Synapse Web uses: Integrated Videos uses: NeuroVault uses: Royal College of Psychiatrists Podcasts uses: WU-Minn HCP 500 Subjects MR and MEG Release uses: Data.gov Science and Research Data Catalog uses: NITRC-IR uses: One Mind Biospecimen Bank Listing uses: Integrated Brain Gene Expression uses: BrainSpan uses: All In The Mind uses: Scientific American Cross-Check uses: PubChem uses: NeuroPod uses: BrainSpan uses: Health.Data.gov uses: Biointeractive uses: UniProtKB uses: Gray Matters uses: dkCOIN uses: Brain Science Podcast uses: NIGMS Human Genetic Cell Repository uses: DISCO uses: GeneDB Lmajor uses: TAIR uses: ScienceNOW uses: Daily Scan uses: SGD uses: Integrated Software uses: BrainPod uses: GeneDB Tbrucei uses: MPO uses: PANTHER uses: Neurology Podcast uses: Integrated Disease uses: VMD uses: UCSF Laboratory for Visual Neuroscience uses: NIMH Chemical Synthesis and Drug Supply Program uses: NIH Neuroscience Microarray Consortium uses: SGN uses: Protocol Online - Your labs reference book uses: Integrated Podcasts uses: OpenNeuro uses: National Academy of Sciences Podcasts uses: Beta Cell Biology Consortium uses: Naturejobs uses: Scientific American Guest Blog uses: jobs.ac.uk uses: New Scientist Jobs uses: Science Careers uses: Access-ScienceJobs.co.uk uses: ScienceBlogs: Life Science uses: ScienceBlogs: Brain and Behavior uses: TheScienceJobs.com uses: Nature Network Blogs uses: The Guardian: Science uses: LabSpaces uses: ScienceBlogs: Medicine and Health uses: Scientific American Observations uses: Scientific American Bering in Mind uses: QUEST uses: Daring Nucleic Adventures - genegeek uses: Oxford Science Blog uses: Sciblogs uses: New York Times - Well uses: SciLogs uses: Cassandras Tears uses: BioPortfolio uses: Now at NEJM uses: 1000 Functional Connectomes Project uses: Integrated Jobs uses: Integrated Blogs uses: JCVI CMR uses: SciCrunch Registry uses: Neuroskeptic uses: CRCNS uses: Expression Atlas of the Marmoset uses: IXI dataset uses: Integrated Auto-Extracted Annotation uses: EU Clinical Trials Register uses: Integrated Clinical Trials uses: Human Brain Atlas uses: goCognitive uses: Law and Neuroscience uses: International Mouse Phenotyping Consortium (IMPC) uses: ClinVar uses: Integrated Gene-Disease Interaction uses: XNAT Central uses: neuroelectro uses: Integrated Nervous System Connectivity uses: Antibody Registry uses: OMIA - Online Mendelian Inheritance in Animals uses: OMIM uses: Science Podcast uses: Mouse Genome Informatics (MGI) uses: Monster uses: NCBI uses: Wired Science Blogs uses: F1000 Posters uses: Neurophilosophy uses: Comparative Toxicogenomics Database (CTD) uses: FlyBase uses: GeneReviews uses: GeneDB Pfalciparum uses: Naturally Selected uses: PomBase uses: Pseudomonas Genome Database uses: The Guardian: Science Videos uses: Orphanet uses: Dictyostelium discoideum genome database uses: PeptideAtlas uses: NeuroSynth uses: neuropathology blog uses: Genomes Unzipped uses: National Institutes of Health Research Portfolio Online Reporting Tool uses: BrainMaps.org uses: It Takes 30 uses: Gait in Parkinson's Disease uses: Physiobank uses: Gait Dynamics in Neuro-Degenerative Disease Data Base uses: American Journal of Psychiatry Podcasts uses: Neurodatabase.org uses: Brain Architecture Management System uses: RanchoBiosciences uses: ModelDB uses: CoCoMac uses: Olfactory Bulb Odor Map DataBase (OdorMapDB) uses: Gene Expression Omnibus uses: Caenorhabditis Genetics Center uses: Labome uses: Open Access Series of Imaging Studies uses: Biological General Repository for Interaction Datasets (BioGRID) uses: Olfactory Receptor DataBase uses: T1DBase uses: Gemma uses: CellML Model Repository uses: ResearchCrossroads uses: Biocompare uses: BioNOT uses: Hays uses: Research Blogging uses: Discover Magazine uses: PolygenicBlog uses: Kawasaki Disease Dataset2 uses: Allen Mouse Brain Connectivity Atlas uses: Integrated Manually Extracted Annotation uses: Roadmap Epigenomics Project uses: Integrated Cell Lines uses: National Mouse Metabolic Phenotyping Centers uses: Mendelspod uses: Integrated Snippets uses: Integrated Datasets uses: Nature Podcast uses: GWAS: Catalog of Published Genome-Wide Association Studies uses: KEGG uses: USC Multimodal Connectivity Database uses: Inside NIA: A Blog for Researchers uses: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) uses: NIF Registry Automated Crawl Data uses: Genetic Analysis Software uses: anage uses: Intestinal Stem Cell Consortium uses: Animal QTLdb uses: elements of morphology uses: Human Life-Table Database uses: Clinical Genomic Database uses: NIDDK Central Repository uses: MONARCH Initiative uses: Human Phenotype Ontology is used by: SciCrunch is used by: NIDDK Information Network (dkNET) lists: AutDB lists: Drug Related Gene Database lists: Gene Ontology Tools lists: CHEBI is listed by: 3DVC is related to: International Mouse Strain Resource is related to: Internet Brain Volume Database is related to: Resource Identification Portal is related to: Rat Genome Database (RGD) is related to: VISTA Enhancer Browser is related to: NIH Human Pluripotent Stem Cell Registry is related to: Zebrafish International Resource Center is related to: Bloomington Drosophila Stock Center is related to: Journal of Comparative Neurology Antibody database has parent organization: Neuroscience Information Framework		NIDA ; NIH Blueprint for Neuroscience Research ; U.S. Department of Health and Human Services HHSN27120080035C		Refer to individual databases	nlx_81822		http://neuinfo.org/nif/nifgwt.html?query=*	SCR_004834	Neuroscience Information Framework Data Federation	2026-09-12 01:00:55	28
Debian Resource Report Resource Website 50+ mentions	Debian (RRID:SCR_006638)	Debian	data or information resource, database, software repository, software resource, source code	Debian is Linux distribution composed of free and open source software, developed by community supported Debian Project, which was established by Ian Murdock on August 16, 1993.Debian comes with over 59000 packages (precompiled software that is bundled up in nice format for easy installation on your machine), package manager (APT), and other utilities that make it possible to manage thousands of packages on thousands of computers as easily as installing single application.	operating system, software package, FASEB list	lists: GUARDD lists: FACS lists: SNAVI lists: Fusion Analyser lists: GEOquery lists: MIMOSA lists: RNAcontext lists: AffyRNADegradation lists: Patchwork lists: GraBCas lists: GENIE3 lists: MODENT - A Tool For Reconstructing Gene Regulatory Networks lists: Megraft lists: PeptideProphet lists: VARiD lists: Flicker lists: ARACHNE lists: Quant lists: riboPicker lists: cn.FARMS lists: ProteinProphet lists: dbSTS lists: flowPeaks lists: SODOCK lists: PEPPER lists: POPBAM lists: Micro-Analyzer lists: MuTect lists: Mfuzz lists: PGS lists: TAPyR lists: ContEst lists: FPSAC lists: FlipFlop lists: SRMA lists: Pindel lists: PhenoFam lists: DSRC lists: SOAP lists: TriageTools lists: StringTie lists: SplitSeek lists: BLASR lists: Bowtie lists: Barrnap lists: MUSCLE lists: GimmeMotifs lists: massiR lists: CUDA-EC lists: Illuminator lists: SplicePlot lists: SLOPE lists: PARalyzer lists: VAAL lists: BreakSeq lists: ProGlycProt lists: OmicsOffice for NGS SeqSolve lists: TileQC lists: NGSUtils lists: QUAST lists: GenomicTools lists: piCALL lists: SNPchip lists: TALLYMER lists: SABER lists: wateRmelon lists: QualiMap lists: BFCounter lists: ADMIXTURE lists: OLIN lists: DEXUS lists: limmaGUI lists: KAnalyze lists: oneChannelGUI lists: BeadDataPackR lists: affylmGUI lists: SAMBLASTER lists: PyLOH lists: fRMA lists: CYCLE lists: FARMS lists: MACAT lists: GlyProt lists: YinOYang lists: Sequedex lists: DictyOGlyc lists: ToppCluster lists: Biocatalogue - The Life Science Web Services Registry lists: ProbRNA lists: HAPLOPAINTER lists: Chilibot: Gene and Protein relationships from MEDLINE lists: GERMLINE lists: FACTA+. lists: CisGenome lists: asSeq lists: unifiedWMWqPCR lists: HOMOZYGOSITYMAPPER lists: Prediction of Amyloid Structure Aggregation lists: InterMine lists: TANGO lists: CQN lists: MEME Suite - Motif-based sequence analysis tools lists: pRESTO lists: S-MART lists: PhosphoSitePlus: Protein Modification Site lists: myExperiment lists: DINDEL lists: Skylign lists: PEDIGRAPH lists: ADaCGH2 lists: CCAT lists: AnimalTFDB lists: TEMP lists: CanSNPer lists: Candida Genome Database lists: SamSPECTRAL lists: InteroPorc lists: MetaBase lists: Pecan lists: cisRED: cis-regulatory element lists: AffyPipe lists: SHORTY lists: BISC lists: Pathway Commons lists: Cake lists: SNVer lists: WebGeSTer DB lists: FlyFactorSurvey lists: ASPGD lists: TcoF lists: cpnDB: A Chaperonin Database lists: ZOOM lists: CAMERA - Collection of annotation related methods for mass spectrometry data lists: BEETL-fastq lists: NGSrich lists: ShotGun lists: Iterative Signature Algorithm lists: SBARS lists: SNPAAMapper lists: Autophagy Database lists: RUbioSeq lists: COSMIC - Catalogue Of Somatic Mutations In Cancer lists: EchoBASE lists: QualitySNPng lists: Pathview lists: pymzML lists: RopeBWT2 lists: ExomeDepth lists: NetPathMiner lists: leeHom lists: PurBayes lists: libCSAM lists: SuperPred: Drug classification and target prediction lists: HGNC lists: Coding Potential Calculator lists: T3DB lists: CPTRA lists: BioNumbers lists: GATE lists: ProRata lists: GreenPhylDB lists: BREAKDANCER lists: GeneFisher lists: tweeDEseq lists: HYDEN lists: Eukaryotic Linear Motif lists: Primer3Plus lists: MethylAid lists: Triplex lists: Distant Regulatory Elements lists: hot scan lists: MFEprimer lists: Proteome Analyst Specialized Subcellular Localization Server lists: mrsFAST lists: BioJS lists: FastSNP lists: Gene Set Enrichment Analysis lists: Pipeliner lists: ms lims lists: GenePattern lists: rBiopaxParser lists: QDNAseq lists: MutDB lists: Piano lists: NovelSeq lists: MAGE-TAB lists: Database of Interacting Proteins (DIP) lists: Weighted Gene Co-expression Network Analysis lists: Blood Group Antigen Gene Mutation Database lists: drFAST lists: pairheatmap lists: MiST - Microbial Signal Transduction database lists: AltAnalyze - Alternative Splicing Analysis Tool lists: SplicingCompass lists: deFuse lists: Assembly Based ReAligner lists: ggbio lists: miR-PREFeR lists: ALDEx2 lists: HTqPCR lists: NanoStringNorm lists: T-profiler lists: Snakemake lists: jmzTab lists: MIPgen lists: Bpipe lists: PoPoolation lists: L-Measure lists: MultiPhen lists: PheWAS R Package lists: InsertionMapper lists: Quantitative Enrichment of Sequence Tags lists: INMEX lists: Segway - a way to segment the genome lists: SeWeR - SEquence analysis using WEb Resources lists: TagDust lists: BSRD lists: DER Finder lists: Stem Cell Discovery Engine lists: Kdetrees lists: Tree and reticulogram REConstruction lists: BioPig lists: NCBI BioSystems Database lists: Distributed String Mining Framework lists: NEWT lists: PILGRM lists: Selectome: a Database of Positive Selection lists: SVMerge lists: Parseq lists: SVseq lists: Small Molecule Pathway Database lists: miRNAKey lists: DELLY lists: Apo and Holo structures DataBase lists: BioSample Database at EBI lists: MetaPhyler lists: MG-RAST lists: SLIQ lists: SOPRA lists: Information Hyperlinked Over Proteins lists: AmphoraNet lists: SINA lists: SSPACE lists: Percolator: Semi-supervised learning for peptide identification from shotgun proteomics datasets lists: STING Report lists: G-BLASTN lists: RNA-eXpress lists: MethPipe lists: SoyBase lists: Strelka2 lists: RUM lists: SPOT - Biological prioritization after a SNP association study lists: VFS lists: PHAge Search Tool lists: MLTreeMap lists: SEECER lists: GeneTalk lists: ERANGE lists: rQuant lists: NCBO Annotator lists: ShoRAH lists: Yabi lists: ORMAN lists: FusionMap lists: CoPub lists: Scripture lists: SolexaQA lists: Kismeth lists: EMAGE Gene Expression Database lists: SAMStat lists: Knime4Bio lists: Bis-SNP lists: GobyWeb lists: Jellyfish lists: PRINSEQ lists: PASS lists: GSNAP lists: SOAPaligner/soap2 lists: MethylViewer lists: READSCAN lists: DistMap lists: MicrobesOnline lists: mrFAST lists: FLASH lists: TIGRFAMS lists: TMA Navigator lists: Bambino lists: TreQ lists: SeqMap lists: SeqTrace lists: TRANSFAC lists: GoFish lists: MethylomeDB lists: CLIPZ lists: SerbGO lists: ToppGene Suite lists: ngsTools lists: PePr lists: DMRforPairs lists: CharProtDB: Characterized Protein Database lists: Expression Profiler lists: SNPsandGO lists: GoSurfer lists: WEGO - Web Gene Ontology Annotation Plot lists: SOURCE lists: Stampy lists: DiseaseMeth lists: BLESS lists: GraphProt lists: GoPubMed lists: ccPDB - Compilation and Creation of datasets from PDB lists: Europe PubMed Central lists: Dr.VIS - Human Disease-Related Viral Integration Sites lists: DOMMINO - Database Of MacroMolecular INteractiOns lists: DBETH - Database for Bacterial ExoToxins for Humans lists: VirHostNet: Virus-Host Network lists: GWASdb lists: HFV Database lists: HotRegion - A Database of Cooperative Hotspots lists: eQuilibrator lists: FunTree lists: Cascade lists: 959 Nematode Genomes lists: ICEberg lists: IndelFR - Indel Flanking Region Database lists: IDEAL - Intrinsically Disordered proteins with Extensive Annotations and Literature lists: ProRepeat lists: NRG-CING lists: InterEvol database lists: MMMDB - Mouse Multiple tissue Metabolome DataBase lists: Newtomics lists: MIPModDB lists: DistiLD - Diseases and Traits in LD lists: Polbase lists: UMD-BRCA1/ BRCA2 databases lists: ScerTF lists: VIRsiRNAdb lists: ProPortal lists: OGEE - Online GEne Essentiality database lists: RecountDB lists: PRED-GPCR lists: RNA CoSSMos lists: PRED-SIGNAL lists: SNPedia lists: SpliceDisease lists: HMM-TM lists: deepSNV lists: OMPdb lists: PRED-LIPO lists: VICUNA lists: Predictive Networks lists: COEUS lists: GeneTrail lists: epigenomix lists: ADGO lists: SRAdb lists: QCGWAS lists: Flycircuit lists: MouseBook lists: Immune Epitope Database and Analysis Resource (IEDB) lists: SitEx lists: GOEAST - Gene Ontology Enrichment Analysis Software Toolkit lists: MSIsensor lists: TSSer lists: ATRHUNTER lists: Phytozome lists: Decombinator lists: ViralZone lists: COLT-Cancer lists: Gene Expression Database lists: BEDTools lists: waviCGH lists: Pseudomonas Genome Database lists: BIGpre lists: MyHits lists: CAPS Database lists: SpliceTrap lists: EagleView lists: IMGT/LIGM-DB lists: RIKEN integrated database of mammals lists: COHCAP lists: DARC - Database for Aligned Ribosomal Complexes lists: canSAR lists: GWAMA lists: AutismKB lists: zfishbook lists: PomBase lists: Myrna lists: PLEXdb - Plant Expression Database lists: RamiGO lists: PhenoM - Phenomics of yeast Mutants lists: IMGT/GENE-DB lists: HIstome: The Histone Infobase lists: SCOP: Structural Classification of Proteins lists: CuticleDB lists: agriGO lists: Expression Database in 4D lists: ESEfinder 3.0 lists: TriTrypDB lists: VIDA lists: Database of Arabidopsis Transcription Factors lists: Atlas of Genetics and Cytogenetics in Oncology and Haematology lists: AgBase lists: Hyper Cell Line Database lists: Midbody, Centrosome and Kinetochore lists: Chromosome 7 Annotation Project lists: MfunGD - MIPS Mouse Functional Genome Database lists: Taipan lists: VISTA Browser lists: T1DBase lists: lobSTR lists: VISTA Enhancer Browser lists: MEROPS lists: Gene Array Analyzer lists: Network Analysis, Visualization and Graphing TORonto lists: Candidate Genes to Inherited Diseases lists: Single Nucleotide Polymorphism Spectral Decomposition (SNPSpD) lists: eTBlast lists: hiPathDB - human integrated Pathway DB with facile visualization lists: MuSiC lists: miRNEST lists: QuasiRecomb lists: neXtProt lists: DNAtraffic lists: BeeBase lists: NetOGlyc lists: GenoTan lists: GMAP lists: LegumeIP lists: SeqBuster lists: elastix lists: iMir lists: WEBLOGO lists: MaCH-Admix lists: Pathema lists: SNPinfo Web Server lists: MOSCPHASER lists: NEBcutter lists: Atlas2 lists: FGDP lists: Velvet lists: HomSI lists: MicroSNiPer lists: MIRA lists: ALLPATHS-LG lists: CUPSAT lists: SVDetect lists: omiRas lists: CopySeq lists: MutSig lists: HapFABIA lists: DIANA-LncBase lists: MutationTaster lists: HMCan lists: Geneious lists: kmer-SVM lists: SICER lists: ZINBA lists: Pedimap lists: MAnorm lists: PlantTFcat lists: MethMarker lists: NPS lists: PeakRanger lists: SEAL lists: OligoArray lists: PSAR-Align lists: CEQer lists: CloudBurst lists: nucleR lists: RACE lists: Asterias lists: PatMaN lists: RobiNA lists: LitInspector lists: Btrim lists: ArrayAnalysis.org lists: CANGS lists: GeneStitch lists: ProDesign lists: JiffyNet lists: AlienTrimmer lists: GenoREAD lists: HSLPred lists: CancerResource lists: FABIA lists: PlnTFDB lists: easyRNASeq lists: OBI-Warp lists: PREDDIMER lists: ECHO lists: ICPL ESIQuant lists: PRIDE Converter 2 lists: SlideSort-BPR lists: COBRApy lists: MFPaQ lists: TopHat-Fusion lists: miRPlant lists: SNP ratio test lists: compomics-utilities lists: PLEK lists: multiplierz lists: Allim lists: ISDTool lists: NetCoffee lists: MToolBox lists: Scalpel lists: DNaseR lists: LocalAli lists: NAIL lists: iceLogo lists: GPU-Meta-Storms lists: AMS lists: rqubic lists: ANNOVAR lists: A5-miseq lists: PhosphoSiteAnalyzer lists: Cell motility lists: MethylCoder lists: CAZy- Carbohydrate Active Enzyme lists: CPFP lists: GENE-counter lists: PoolHap lists: LOCAS lists: CloudAligner lists: HeurAA lists: Mouse Genome Database lists: MitoBreak lists: PolyPhen: Polymorphism Phenotyping lists: GSA-SNP lists: featureCounts lists: Crossbow lists: CSAR lists: seqMINER lists: BEADS lists: IUPHAR/BPS Guide to Pharmacology lists: QuantiSNP lists: Cube-DB lists: Death Domain database lists: psRNATarget lists: DSAP lists: PlantNATsDB - Plant Natural Antisense Transcripts DataBase lists: GeneSigDB lists: MACS lists: NGSmethDB lists: GENSCAN lists: INCLUSive lists: MINAS - Metal Ions in Nucleic AcidS lists: Composition Profiler lists: NNcon lists: EGSEA lists: SCRATCH lists: Telescoper lists: Buccaneer lists: ProtTest lists: Morpheus lists: KAVIAR lists: DISEASES lists: SPEX2 lists: RAST Server lists: GeneWise lists: Crystallography and NMR System (CNS) lists: FATCAT lists: Membrane Protein Explorer lists: LTR_Finder lists: PALEOMIX lists: TISSUES lists: MetaMapR lists: primers4clades lists: MS-GF+ lists: PLAN2L lists: Off-Spotter lists: ProteomicsDB lists: CHiCAGO lists: SC3 lists: Bio-tradis lists: ApiDB CryptoDB lists: HISAT2 lists: PhyD3 lists: LoRDEC lists: Bamtools lists: ALTER lists: MultiQC lists: TFBS lists: EnrichmentMap lists: Poretools lists: Exonerate lists: 3D-footprint lists: Genesis lists: oligo lists: DISULFIND lists: Fastml lists: mentha lists: Oufti lists: eXpression2Kinases lists: IDEPI - IDentify EPItopes lists: SMAGEXP lists: ProCon - PROteomics CONversion lists: TRANSIT lists: DINIES lists: Splicing Express lists: FluxModeCalculator lists: Lifebit Deploit lists: ngsRelate lists: SARTools lists: OmicsNet lists: SPICE lists: Microscopy Image Browser lists: Thunder STORM lists: clusterProfiler lists: NetworkAnalyst lists: ANOCVA lists: Rsubread lists: Subread lists: ConsensusClusterPlus lists: CIBERSORT lists: FRETBursts lists: CCTOP lists: scran lists: ScaffMatch lists: Heatmapper lists: Goseq lists: PRSice lists: UMI-tools lists: Proovread lists: BinPacker lists: JAMM lists: CentroidFold lists: ComplexHeatmap lists: PatchDock lists: FastProject lists: ExPASy ABCD database lists: Gigwa lists: shinyGEO lists: GeSeq lists: EMBOSSMatcher lists: Geneshot lists: Mousebytes lists: trimAl lists: AmoebaDB lists: STRUCTURE lists: PASTEClassifier lists: NetPhos lists: HiC-Pro lists: SWISS-MODEL lists: Blood Exposome Database lists: HingeProt lists: ChiCMaxima lists: ProtParam Tool lists: GalaxyRefine lists: FlowCal lists: SpydrPick lists: R/qtl2 lists: Roary lists: SIGNOR lists: Protein Interactions Calculator lists: REDIportal lists: MaxAlign lists: Minimap2 lists: PrognoScan lists: GPS-SUMO lists: Signaling Pathways Project lists: ProSA-web lists: GalaxyWEB lists: iTOL lists: EpiModel lists: rVista lists: AlgPred lists: D-GENIES lists: Robetta lists: GOnet lists: E-CRISP lists: STAMP lists: Batch Web CD-Search Tool lists: aroma.light lists: Annotree lists: Database of Secondary Structure Assignments lists: Clustal Omega lists: DESeq lists: discoSnp lists: vcflib lists: Genome BioInformatics Research Lab - gff2ps lists: Primer3 lists: BioPerl lists: Rainbow lists: RNAhybrid lists: Clustal W2 lists: Apollo lists: IgBLAST lists: Ray lists: khmer lists: Stacks lists: Predictions for Entire Proteomes lists: DIALIGN lists: EBSeq lists: Minia lists: SAMtools/BCFtools lists: Artemis: Genome Browser and Annotation Tool lists: NCBI BLAST lists: biobambam lists: VICMpred lists: Staden Package lists: Bowtie 2 lists: RAxML lists: WHAM lists: VarScan lists: Bismark lists: ea-utils lists: HTSeq lists: Vienna RNA lists: Regulatory Sequence Analysis Tools lists: BitSeq lists: COILS: Prediction of Coiled Coil Regions in Proteins lists: HilbertVis lists: BRIG lists: Unipro UGENE lists: GBrowse lists: Sickle lists: AmpliconNoise lists: FreeBayes lists: tRNAscan-SE lists: CD-HIT lists: SSAKE lists: MACH lists: Segemehl lists: BEAST lists: Pscan-ChIP lists: cutadapt lists: Oases lists: CGView lists: SOAPsnp lists: T-Coffee lists: Kalign lists: Circos lists: Trinity lists: Flexbar lists: SIFT lists: ProbCons lists: OpenMS lists: RSEM lists: Glimmer lists: GROMACS lists: CummeRbund lists: edgeR lists: DNAcopy lists: TopHat lists: SortMeRNA lists: LIMMA lists: AMOS lists: Cufflinks lists: Nanopolish lists: GMA lists: Prokka lists: phyloseq lists: SeqPrep lists: precrec lists: Atac lists: PAML lists: KisSplice lists: StoatyDive lists: IMGT-ONTOLOGY lists: KAT lists: SeaView lists: FastTree lists: Crux tandem mass spectrometry analysis software lists: rCASC lists: minet lists: becas lists: tximport lists: globaltest lists: CheckM lists: BLINK lists: mosdepth lists: bwtool lists: dcmqi lists: Pilon lists: ASHLAR lists: metagen lists: COPASI lists: BUSCO lists: bridge lists: TGS-GapCloser lists: NiftyPET lists: Blobtools lists: THESIAS lists: Fcirc lists: chimerascan lists: GLUE lists: SwiftOrtho lists: HaploReg lists: ScanITD lists: andi lists: metahdep lists: ImaGene lists: Jalview lists: MeroX lists: qrqc lists: BioNix lists: MiXCR lists: casper lists: libmgf lists: sleuth lists: imDEV lists: miRDB lists: yaqcaffy lists: NiftyFit lists: mlgt lists: SMARTdenovo lists: HH-suite lists: StatAlign lists: affy lists: shovill lists: Fiji lists: Racon lists: rbsurv lists: quantsmooth lists: tensorflow lists: seqbias lists: ngs.plot lists: bsseq lists: MGnify lists: dyebias lists: h5vc lists: ascat lists: Cuffdiff lists: mitopred lists: OrthoFinder lists: PIRATE lists: Bridger lists: Eoulsan lists: VEnCode lists: eTRIKS lists: fracridge lists: lumi lists: genomation lists: Hippocampome.org lists: SymPy lists: icy lists: GADMA lists: HaTSPiL lists: XL-mHG lists: ropls lists: scanpy lists: MethBase lists: sabre lists: plgem lists: MyGene.info lists: CRISPRcasIdentifier lists: biobakery lists: VETA lists: EpiEstim lists: HyPhy lists: ODAM lists: BISE lists: docker4seq lists: qcmetrics lists: Pavian lists: genehunter-imprinting lists: smashpp lists: NanoSim lists: SimVascular lists: BSA4Yeast lists: minfi lists: TDimpute lists: RepeatScout lists: neuroelectro lists: MRIcron lists: RepeatFiller lists: ShinyLearner lists: CRISPR-ERA lists: CRISPR-P lists: Warp lists: GEMINI lists: MAFFT lists: TransDecoder lists: Phenoscape lists: PhenoMeNal lists: les lists: Laniakea lists: CandiMeth lists: eisa lists: ProP Server lists: ggtree lists: scVelo lists: PathwayMatcher lists: charm lists: Telescope lists: skewer lists: multtest lists: Human Neocortical Neurosolver lists: beadarray lists: BioBERT lists: PlotTwist lists: GraphClust2 lists: METAREP lists: QIIME lists: halSynteny lists: scater lists: Galaxy scater lists: larvalign lists: iontree lists: VAPPER lists: GENCODE lists: Datanator lists: Bio2BEL lists: UALCAN lists: ffpe lists: MCScan lists: VisR lists: Metascape lists: GemSIM lists: EvidenceFinder lists: pepwheel lists: RDXplorer lists: bcbio-nextgen lists: OpenWorm lists: ActiveDriver lists: QuickNII lists: timecourse lists: Bionitio lists: ggplot2 lists: TCW lists: SPM lists: pvac lists: GeneMarkS-T lists: ascend lists: RatMine lists: CRISPRdirect lists: phantompeakqualtools lists: prank lists: refgenie lists: NanoPipe lists: vsn lists: PAFScaff lists: odMLtables lists: biospytial lists: NeuroChaT lists: clustergrammer lists: glycomedb lists: CLIP-Explorer lists: pheatmap lists: EnteroBase lists: GigaSOM.jl lists: bio.tools lists: SPP lists: lapmix lists: EHRtemporalVariability lists: HmtVar lists: SnpHub lists: Online Peri-Event Time Histogram for Open Ephys lists: NMRProcFlow lists: QGIS lists: Flye lists: kallisto lists: clipcrop lists: cn.mops lists: UniCarbKB lists: pickgene lists: PsyGeNET lists: seq-annot lists: PASA lists: ReadqPCR lists: breseq lists: e-Driver lists: sim4cc lists: PhylomeDB lists: fastqz lists: PerM lists: rnaQUAST lists: NCBI BioProject lists: PEMer lists: metabnorm lists: FusionCatcher lists: STAR lists: VCFtools lists: UniCarb-DB lists: NormqPCR lists: SnpEff lists: DecGPU lists: gprege lists: VirusMINT lists: nondetects lists: circlize lists: SAMTOOLS lists: Neuroscience Information Framework lists: Dali Server lists: IRanges lists: dbEST lists: Genomic Ranges lists: eProbalign lists: Cistrome lists: DIANA-mirPath lists: BpForms lists: GenomicFeatures lists: SOAPdenovo lists: BcForms lists: 4See lists: ABNER lists: A Classification of Mobile genetic Elements lists: Addgene lists: BadMedicine lists: ADMIXMAP lists: ADMIXTOOLS lists: ALCHEMY lists: AETIONOMY lists: ABS: A Database of Annotated Regulatory Binding Sites From Orthologous Promoters lists: ALBERT lists: ALOHOMORA lists: Alternate splicing gallery lists: Allele Frequencies in Worldwide Populations lists: AmpliconTagger lists: Molecular Dynamics Workflow (BioKepler) lists: ape lists: Alta-Cyclic lists: Assisted Model Building with Energy Refinement (AMBER) lists: Aroma.affymetrix lists: ANDES lists: ASSOCIATIONVIEWER lists: ArrayMiner lists: ASPEX lists: The Alternatve Splicing Database lists: AutoAssemblyD lists: AutoDock Vina lists: BAIT lists: BamView lists: Avogadro lists: ArrayPipe lists: Athena lists: BLAT lists: BARS lists: BayesEpiModels lists: BatMeth lists: BeetleBase lists: BBSeq lists: naiveBayesCall lists: BarraCUDA lists: BCBtoolkit lists: BioConda lists: BAR lists: BiG-SLiCE lists: SVM based method for predicting beta hairpin structures in proteins lists: betaVAEImputation lists: BiNGO: A Biological Networks Gene Ontology tool lists: Bioinformatics Toolkit lists: BioCarta Pathways lists: Biopieces lists: Bio++ lists: BioPlex lists: BioSimulations lists: BRAIN lists: BOMP: beta-barrel Outer Membrane protein Predictor lists: biomaRt lists: bioSyntax lists: Bionimbus lists: BioSimulators lists: bioRxiv lists: Breakpointer lists: CiLiQuant lists: BSVF lists: BS Seeker lists: Bs-Seeker2 lists: BWA lists: CARD lists: Canu lists: Cell Image Library (CIL) lists: BRB-ArrayTools lists: CATALYST lists: CATH: Protein Structure Classification lists: CAT lists: CEM lists: CASPAR lists: CHEBI lists: ChimeraSlayer lists: CATdb: a Complete Arabidopsis Transcriptome database lists: ChemSpider lists: Chipster lists: CCREL lists: cisTEM lists: circlncRNAnet lists: Centrifuge Classifier lists: Cancer Genome Anatomy Project lists: ChIPMunk lists: Chromas lists: CiteFuse lists: CRCView lists: ChiRA lists: ClinVar lists: ClinTrajAn lists: clustLasso lists: CleanEx lists: Clinotator lists: CNVer lists: ComiR lists: CODEHOP lists: ClustVis lists: Comparative Metatranscriptomics Workflow lists: CMap lists: CorMut lists: CNV-seq lists: Coot lists: CITE-seq-Count lists: CoCo lists: CopyDetective lists: Chromosome Scale Assembler lists: cortex lists: ConDeTri lists: CRISPy-web lists: CONTRA lists: CovalentDock Cloud lists: CUDASW++ lists: COGEME Phytopathogenic Fungi and Oomycete EST Database lists: DANPOS2 lists: DOGMA lists: CorrDrugTumorMSI lists: DAMBE lists: D-EE lists: CoryneRegNet lists: ΔG prediction server lists: DIAMOND lists: CYANA lists: Datasets2Tools lists: DEXSeq lists: DichroWeb lists: NCBI database of Genotypes and Phenotypes (dbGap) lists: DBTSS: Database of Transcriptional Start Sites lists: dbSNP lists: DiffBind lists: DETONATE lists: DiProGB lists: Descriptions of Plant Viruses lists: DIME lists: DicomTypeTranslator lists: CSDeconv lists: Dictyostelium discoideum genome database lists: DSK lists: DGIdb lists: DisProt - Database of Protein Disorder lists: DOMINE: Database of Protein Interactions lists: eDMR lists: ECLIPSE lists: Experimental Design Assistant lists: Dissect lists: Evolutionary Couplings Server lists: Enrichr lists: ensembldb lists: European Genome phenome Archive lists: EBCall lists: Ensembl Genomes lists: EMAN lists: ENIGMA lists: DISENTANGLER lists: Entrez Gene lists: Ensembl lists: eQtlBma lists: EpiGRAPH lists: EpiDISH R package lists: Examl lists: epitopepredict lists: DrivAER lists: Variant Effect Predictor lists: Epigenomics Workflow on Galaxy and Jupyter lists: Eukaryote Genes lists: Evex lists: FateID lists: EXOMEPICKS lists: European Variation Archive (EVA) lists: FANTOM DB lists: Genome Annotation Generator lists: FireDB lists: FGENESH lists: FluoRender lists: FLOSS lists: fineSTRUCTURE lists: FastQC lists: FINDbase Worldwide lists: ExpressYourself lists: fgsea lists: FuncAssociate: The Gene Set Functionator lists: NHLBI Exome Sequencing Project (ESP) lists: FlyBase lists: FlexProt: flexible protein alignment lists: GASV lists: Fugu Genome Project lists: Full-Length cDNA Database lists: FragGeneScan lists: FunRich: Functional Enrichment analysis tool lists: FlowSOM lists: GASSST lists: GeMoMa lists: An Integrated Multiple Structure Visualization and Multiple Sequence Alignment Application lists: GEDIT lists: VBASE2 lists: Genome Database for Rosaceae lists: GenePattern Notebook lists: G-Mo.R-Se lists: FusionHunter lists: Genome Projector lists: GeneCodis lists: GEN3VA lists: GENERECON lists: GEMB lists: GeCo3 lists: Gene3D lists: Genomic Annotation in Livestock for positional candidate LOci lists: Gene Expression Atlas lists: GeneProf lists: Genome Trax lists: Genome Reviews lists: GATK lists: FunCluster lists: GFINDer: Genome Function INtegrated Discoverer lists: GermOnline lists: GeneSeeker lists: Gmove lists: Genometa lists: GensearchNGS lists: HARSH lists: Gibbs Motif Sampler lists: Generic GO Term Mapper lists: Genomedata lists: GMcloser lists: GEO2R lists: Gramene lists: Genome Aggregation Database lists: GoMapMan lists: GEPAT lists: Git lists: GNUMAP lists: Generic GO Term Finder lists: Graph2GO lists: Gene Ontology lists: Gaggle lists: GO2MSIG lists: GRASS lists: Bioinformatic Harvester IV (beta) at Karlsruhe Institute of Technology lists: Genovar lists: HASTE-project lists: H-InvDB lists: Homologous Sequences in Ensembl Animal Genomes lists: Google lists: IMGT/HLA lists: Human Gene Mutation Database lists: GTDB-Tk lists: G protein receptor interaction feature finding instrument lists: HubMed lists: HPEPDOCK Server lists: HUGE - Human Unidentified Gene-Encoded large proteins lists: HAPLOCLUSTERS lists: HiCUP lists: International HapMap Project lists: HiPipe lists: HTR lists: HINT lists: Hybrid-denovo lists: HS-TDT lists: Human Gene Connectome Server lists: HSSP lists: iDASH lists: hyfi: software suite for binding site search lists: HUDSEN lists: IMGT/StatClonotype lists: I-TASSER lists: ImJoy lists: IMEx - The International Molecular Exchange Consortium lists: IMG System lists: HCLUST lists: Human Splicing Finder lists: lme4 lists: Identifiers.org lists: IPD - Immuno Polymorphism Database lists: IntEnz- Integrated relational Enzyme database lists: IBIS: Inferred Biomolecular Interactions Server lists: IMGT - the international ImMunoGeneTics information system lists: Integr8 : Access to complete genomes and proteomes lists: IMGT HighV-QUEST lists: Isaac lists: Interolog/Regulog Database lists: InterProScan lists: IRESite lists: IPI lists: inGAP lists: ISFinder lists: KGGSeq lists: iPiG lists: IsoLasso lists: J-Express lists: JGI Genome Portal lists: IsaCGH lists: lncRNAdb lists: LDSELECT lists: IsoEM lists: Database oDatabase of Predicted Subcellular Localization for Eukaryotic PDB Chainsf Predicted Subcellular Localization for Eukaryotic PDB Chains lists: IMG lists: LTR_FINDER_parallel lists: LAST lists: MBGD - Microbial Genome Database lists: jmzML lists: OntoQuest lists: LOCUSMAP lists: MaizeGDB lists: long-read-tools lists: LRPath lists: Magic lists: LS-SNP/PDB lists: LOCATE: subcellular localization database lists: Mammalian Gene Collection lists: Machado lists: MACiE lists: Maqview lists: LitMiner lists: MAKER lists: MEBS: Multigenomic Entropy-Based Score lists: MapSplice lists: Mascot lists: mapDamage lists: MEGAHIT lists: Metabolomics Workbench lists: Libra lists: ML Repo lists: MARRVEL lists: Maq lists: MentaLiST lists: MB-GAN lists: MetaCyc lists: MAP lists: MeQA lists: Metastats lists: MatrixDB lists: MetAMOS lists: MeRIP-PF lists: MendelIHT.jl lists: metaXplor lists: lsa_slurm lists: MetaCyto lists: UEA sRNA Workbench lists: MetaVelvet lists: MMAPPR lists: MBCluster.Seq lists: MIP Scaffolder lists: MERMAID lists: MobiDB lists: MPDA lists: MaSuRCA lists: MICSA lists: MIRIAM Resources lists: miROrtho: the catalogue of animal microRNA genes lists: NCBI lists: proMODMatcher lists: miRBase lists: MethylExtract lists: SCIPION lists: MPscan lists: mirTools lists: MISA lists: MP3 tool lists: Mspire-Simulator lists: Multi-omics Visualization Platform lists: mrCaNaVaR lists: MoDIL lists: MultiLoc lists: MULTIDISEQ lists: Noncoding RNA database lists: MRFSEQ lists: MizBee lists: Multiple Myeloma survival predictor lists: Mouse Phenome Database (MPD) lists: Nucleic Acid Database lists: Myriads lists: miRpathDB lists: MUMmer lists: mzMatch lists: NeLS lists: NEST Simulator lists: MutPred lists: NEMBASE lists: Open Babel lists: NetMHCpan Server lists: MULTIMAP lists: NCBI Genome Workbench lists: Nephele lists: NCBI Probe lists: Ngmlr lists: Necklace lists: NetNGlyc lists: NucleoFinder lists: NeuroMatic lists: Genotyping lists: NGSView lists: NOrMAL lists: Opera lists: NURD lists: ngLOC lists: NeSSM lists: NanoGalaxy lists: ObjTables lists: nmrML lists: nsSNPAnalyzer lists: OsiriX Medical Imaging Software lists: parSMURF lists: Open Trials lists: Ngs backbone lists: PartiGeneDB lists: Pfam lists: Oncodrive-fm lists: Online Resource for Community Annotation of Eukaryotes lists: PanoramaWeb lists: Omics Data Paper Generator lists: Pathway Tools lists: PDBe - Protein Data Bank in Europe lists: Pash 3.0 lists: Orientations of Proteins in Membranes database lists: Pathbase lists: PEDHUNTER lists: PAZAR lists: Peakzilla lists: PeakAnalyzer lists: Pairwise Conservation Scores - An Algorithm to Identify Conserved K-mers lists: Pedigree-Draw lists: OLego lists: Parliament2 lists: PEDIGREEQUERY lists: PeakSeq lists: PEDPEEL lists: PhaseME lists: PHI-base lists: PHYLIP lists: PDB Finder lists: Phylogeny.fr lists: PRICE lists: PennSeq lists: Illuminating the Druggable Genome lists: Philius lists: Phenotypes and eXposures Toolkit lists: PhyloPat lists: PicTar lists: Eddy Lab Software lists: Protein Information Resource lists: PhyML lists: PhenoMan lists: PeptideAtlas lists: PIRSF lists: Polygenic Pathways lists: PLANTTFDB lists: pNovo+ lists: PLINK/SEQ lists: PEMA lists: pFind Studio: pLink lists: PM4NGS lists: PrimerBank lists: ProSight Lite lists: PolymiRTS lists: Phospho.ELM lists: Plant Co-expression Annotation Resource lists: Rampart lists: Protein Prospector lists: ProteomeXchange lists: PRED-TMBB lists: Proteomics Identifications (PRIDE) lists: PS-Plant Framework lists: ProtChemSI lists: PRADA lists: Pyntacle lists: PubCrawler lists: ProfCom - Profiling of complex functionality lists: PrimerSeq lists: PyBEL lists: PubChem lists: PubGene lists: R/QTLBIM lists: QGene lists: QMSIM lists: QmRLFS-finder lists: PolyPhred lists: QSRA lists: Preseq lists: ReactomePA lists: QuickGO lists: QUMA lists: RAREMETAL lists: REDItools lists: The Human Protein Atlas lists: rSNP Guide lists: PyRosetta lists: RefSeq lists: RaptorX lists: Reaper - Demultiplexing trimming and filtering sequencing data lists: RegulonDB lists: RESID lists: R Project for Statistical Computing lists: Reactome lists: Rdisop lists: RepeatModeler lists: RESCUE-ESE lists: Relate lists: Reptile lists: R-SAP lists: riborex lists: RNA-SeQC lists: QuPath lists: RNA FRABASE - RNA FRAgments search engine and dataBASE lists: RADAR-base lists: RiboTaper lists: SAMMate lists: rna-stability lists: RightField lists: SASGENE lists: RNAplex lists: runBioSimulations lists: ResponseNet lists: SilkDB lists: Scansite lists: Research-tested Intervention Programs (RTIPs) lists: sapFinder lists: SeqtrimNEXT lists: RNA Virus Database lists: SALT lists: SEEK lists: Seqtk lists: REDfly Regulatory Element Database for Drosophilia lists: SAFA Footprinting Software lists: SeqExpress lists: ROMPREV lists: SeqSaw lists: SeqEM lists: SHELX lists: rSeq lists: SHARCGS lists: rnaSPAdes lists: SimSeq lists: SGA lists: Sherman lists: SeQuiLa lists: SGD lists: ShinyGO lists: SISYPHUS lists: SVA lists: ASC lists: SIMULATE lists: SILVA lists: SNP HITLINK lists: SIBLINK lists: SKAT lists: SimRare lists: SnoopCGH lists: SMRT View lists: SASQUANT lists: SIMPED lists: Sniffles lists: SIBMED lists: SMI Services lists: SOAPnuke lists: SGN lists: SIDER lists: SMART lists: ShortFuse lists: SWEEP lists: SnpSift lists: SOAPfusion lists: SNPTEST lists: SwissTree lists: TopFIND lists: Solas lists: SoupX lists: STEPS lists: FASTSLINK lists: SpliceMap lists: StSNP lists: Supersplat lists: Sybil lists: TAPIR: target prediction for plant microRNAs lists: SWISS-2DPAGE lists: SISSRs lists: T-lex lists: SUMSTAT lists: TAGS lists: Spot lists: TDR Targets Database lists: TDT-PC lists: SpoTyping lists: SynTView lists: SynergyFinder lists: TRAL lists: SPIKE lists: Transporter Classification Database lists: TransmiR lists: TASSEL lists: SYFPEITHI: A Database for MHC Ligands and Peptide Motifs lists: FLUX CAPACITOR lists: TB PORTALS lists: TAndem Splice Site DataBase lists: VirusHunter lists: topGO lists: TMAJ lists: ApiDB ToxoDB lists: tradeSeq lists: TreeDyn lists: Trans-ABySS lists: IQ-TREE lists: Biological General Repository for Interaction Datasets (BioGRID) lists: Trowel lists: TomoMiner lists: UTRdb/UTRsite lists: TWOLOC lists: V-Phaser 2 lists: TropGENE DB lists: Trim Galore lists: TRACESPipe lists: Gene Index Project lists: Tool recommender system in Galaxy lists: WEIGHTED FDR lists: UTGB Toolkit lists: xia2 pipeline lists: USeq lists: TRiCoLOR lists: UniParc lists: VAAST lists: variancePartition lists: VirusSeq lists: Webproanalyst lists: XPN lists: WSsas - Web Service for the SAS tool lists: UNAFold lists: zUMIs lists: VaDiR lists: Yeast Search for Transcriptional Regulators And Consensus Tracking lists: Vector Alignment Search Tool lists: Zebrafish Information Network (ZFIN) lists: YASARA lists: Vmatch lists: VFDB - Virulence Factors of Bacterial Pathogens lists: Xenbase lists: Visualization and Analysis of Networks containing Experimental Data (VANTED) lists: VisSR lists: AutoDock lists: dbEST lists: DESeq2 lists: DNA DataBank of Japan (DDBJ) lists: FASTX-Toolkit lists: SUP lists: Trimmomatic lists: VIPERdb lists: ABySS lists: AdapterRemoval lists: Alien-hunter lists: ALTree lists: Integrative Genomics Viewer lists: RDKit: Open-Source Cheminformatics Software lists: Acacia lists: AMAP lists: Anfo lists: Aragorn lists: Arden lists: Ariba lists: ART lists: Augustus lists: Axe lists: Baitfisher lists: BALLView lists: BEAGLE lists: BEDOPS lists: eXpress lists: BOXSHADE 3.21 lists: Cassiopee lists: Cdbfasta lists: Circlator lists: Clearcut lists: Clonalframe lists: ClonalOrigin lists: Computational Morphometry Toolkit lists: Concavity lists: CRAC lists: cwltool lists: Daligner lists: Datamash lists: DNACLUST lists: DWGSIM lists: Eigensoft lists: EMBOSS lists: ESTScan lists: EULER-SR lists: FASTLINK lists: FigTree lists: fitGCP lists: Fsm-lite lists: Gamgi lists: GASiC lists: Ghemical lists: GIIRA lists: Grinder lists: Gwyddion lists: Hmmer lists: HTQC lists: IDBA-UD lists: ImageJ lists: Infernal lists: PyMOL lists: GenABEL lists: Biopython lists: QuorUM lists: Prodigal lists: QuteMol lists: PRESTO: Genetic Association Analysis Software lists: Probalign lists: Computational Structural Biology Toolbox lists: LEfSe lists: Happy lists: jModelTest lists: KMC lists: LAMARC lists: libRoadRunner lists: LoFreq lists: MetaPhlAn lists: MicrobiomeUtilities lists: MINIMAC lists: MIPE lists: mothur lists: Mugsy lists: GNU Octave lists: Oncofuse lists: PBSIM lists: PerlPrimer lists: PHAST lists: Picard lists: PLINK lists: ADEGENET lists: phytools lists: PSCBS lists: R/QTL lists: SAM lists: vegan lists: RepeatMasker lists: Scythe lists: SEER lists: Seq-Gen lists: SMRT-Analysis lists: Scalable Nucleotide Alignment Program lists: SPAdes lists: TraceTuner lists: Transterm lists: TreeView lists: Viewmol lists: Vascular Modeling Toolkit lists: Aegean lists: amide lists: Anndata lists: ANTS - Advanced Normalization ToolS lists: ARB project lists: ArtificialFastqGenerator lists: Arvados lists: Bandage lists: Berkeley Advanced Reconstruction Toolbox lists: BBmap lists: Eagle lists: Bio-Formats lists: BioImage Suite lists: BioJava Project lists: BioSig: An Imaging Bioinformatics System for Phenotypic Analysis lists: BRAKER lists: Bustools lists: Computerized Anatomical Reconstruction and Editing Toolkit lists: CellProfiler Image Analysis Software lists: ChIPSeq Peak Finder lists: ChromHMM lists: Cluster lists: Cytoscape lists: Dazzler lists: DCMTK: DICOM Toolkit lists: DeepNano lists: dinifti lists: DICOMscope lists: Dipy lists: Drop-seq tools lists: Electronic Cell Project lists: Ecopcr lists: Edtsurf lists: DOMAINATRIX lists: DOMALIGN lists: Embassy-domsearch lists: E-mem lists: e-PCR lists: Falcon lists: Fastaq lists: Fastqtl lists: Ffindex lists: FreeSurfer lists: FSA lists: FSL lists: Galaxy lists: GARLI lists: Garlic lists: IndelGenotyper lists: gdpc lists: Gemma lists: GenomeTools lists: Gentle lists: GERP lists: Gff2aplot lists: gffread lists: GraPhlAn lists: Gubbins lists: Harvest-tools lists: HiLive lists: Hinge lists: ImageMagick lists: ImageVis3D lists: Indelible lists: InVesalius 3 lists: IQ TREE lists: ITK-SNAP lists: JBrowse lists: JIST: Java Image Science Toolkit lists: Fastahack lists: Lipsia lists: LUMPY lists: Mash lists: Mesquite lists: MetaBAT lists: MOSAIK lists: MRtrix lists: Human Disease Ontology lists: NanoFilt lists: Object-Oriented Development Interface for NMR lists: OpenElectrophy lists: OpenMEEG lists: OpenWalnut lists: OptiType lists: PARASAIL lists: ParaView lists: PhyloPhlAn lists: Phyutility lists: Porechop lists: PSIPRED lists: PsychoPy lists: Pychopper lists: pydicom lists: PySurfer lists: MNE software lists: pbcore lists: pyxnat lists: QIIME2 lists: RAxML Next Generation lists: ShortRead lists: Phangorn lists: psych lists: VennDiagram lists: Recognition of Errors in Assemblies using Paired Reads lists: RELION lists: RStudio lists: Salmon lists: Scoary lists: University of Zurich SCRM - Cell-and Tissue Biobank lists: Short Read Sequence Typing for Bacterial Pathogens lists: Umap lists: VoxBo lists: WTDBG lists: XNAT - The Extensible Neuroimaging Archive Toolkit lists: ABACAS lists: AceDB lists: LINKAGE lists: Protein Information Resource lists: PredictNLS lists: tRNAscan-SE lists: RSEM lists: Aeskulap lists: alleleCount lists: assembly-stats lists: Atropos lists: Assemblytics lists: Augur lists: AxParafit lists: Aghermann lists: bambamc lists: AxPcoords lists: bamkit lists: BAli-Phy lists: Auspice lists: BBHash lists: BCALM 2 lists: Bibus lists: BioMAJ lists: BioCocoa lists: Biber lists: BioImageXD lists: caftools lists: BOLT-LMM lists: CamiTK lists: CLI for BioMAJ lists: CAMP lists: CAT and BAT lists: CHIME lists: CDK lists: ChromImpute lists: CiftiLib lists: conda-package-handling lists: CARD lists: CONTRAfold lists: CodonW lists: Change-O lists: C Thread Pool lists: Chemtool lists: covtobed lists: CTK lists: CTDopts lists: CTDConverter lists: Conquest DICOM lists: CTSim lists: Dicom3tools lists: Dendroscope3 lists: cyvcf2 lists: Deepbinner lists: EDFlib lists: EDFbrowser lists: dicompyler lists: EMMAX lists: DEXTRACTOR lists: DNApi lists: Epigrass lists: ELPH lists: ExaBayes lists: EMPeror lists: FreeImage lists: Fast5 Library lists: Entangle lists: FFP lists: GenomeTester4 lists: Filtlong lists: EMBOSS explorer lists: GfaPy lists: GATB lists: GCLib lists: EpiFire lists: HTSJDK lists: GDCM lists: GNUmed lists: GraphMap2 lists: foreign lists: Ginkgo CADx lists: GramAlign lists: IDeFIX lists: ImageTooth lists: Htscodecs lists: IGoR lists: iVar lists: InsPecT lists: Intake lists: IgDiscover lists: JAligner lists: ISMRMRD lists: JabRef lists: Lambda lists: Kaptive lists: KBibTeX lists: InSilicoSeq lists: kineticsTools lists: AcePerl lists: KmerResistance lists: Bio-EUtilities lists: Insight Toolkit lists: Kleborate lists: KMA lists: kempbasu lists: Bio-ASN1-EntrezGene lists: IVA lists: Bio-Coordinate lists: Bio-Graphics lists: AI-FANN lists: Bio-Chado-Schema lists: BioD lists: Bio-Tools-Run-Alignment-Clustalw lists: Bio-PrimerDesigner lists: Bioparser lists: Edlib lists: Bio-SamTools lists: libdisorder lists: libncl lists: Bio-Tools-Run-Alignment-TCoffee lists: Chado lists: Bio-Tools-Phylo-PAML lists: libGDF lists: JLODA lists: libdivsufsort lists: libminc lists: Bio-SCF lists: Sort-Key-Top lists: Java NeXML libraries and tools lists: libmaus2 lists: libqes lists: MIA lists: libics lists: FAST Analysis of Sequences Toolbox lists: Libchipcard lists: TaxonomyTree lists: Core Wrapper lists: Lighter lists: SSW Library lists: libqc++ lists: SeqLib lists: tabixpp lists: libStatGen lists: ThreadPool lists: Lucy lists: MafFilter lists: Metastudent lists: Libxdf lists: limereg lists: Mapsembler2 lists: MAXFLOW lists: metaBIT lists: MacSyFinder lists: VIGRA lists: MCL lists: MHAP lists: MindTheGap lists: Logol lists: medicalterms lists: mmtf-python lists: Miniasm lists: Tab2MAGE lists: MView lists: LTRsift lists: Molekel lists: mirtop lists: Maude lists: MicrobeGPS lists: mPSQed lists: mPTP lists: SMILE lists: Entrez Direct lists: NW-align lists: NanoSV lists: Mustang lists: Nanocall lists: Ngila lists: MRtrix3 lists: NORSp lists: Murasaki lists: Nextflow lists: NCBI accession download script lists: omegaMap lists: NJplot lists: NanoLyse lists: OpenCFU lists: NORSnet lists: OBITools lists: NeoBio lists: OptimiR lists: PartitionFinder lists: OpenSurgSim lists: NanoPlot lists: NextSV lists: OpenEMR lists: Orthanc lists: PAIPline lists: Odil lists: PHYLOViZ lists: PlasmidSeeker lists: PDB2PQR lists: OpenIGTLink lists: Parsnp lists: parallel-fastq-dump lists: ParsInsert lists: PiGx-RNAseq lists: PfTools lists: PlasmidID lists: Phyx lists: pipasic lists: pngquant lists: pbcopper lists: Patristic lists: PLIP lists: Placnet lists: PhySamp lists: pufferfish lists: PRINSEQ lists: PLAST lists: PCMA lists: picopore lists: POA lists: PROFisis lists: ProDA lists: PRANK lists: Cooler lists: pyepl lists: pssh2 lists: Plastimatch lists: pynast lists: psignifit lists: python-airr lists: Populations lists: pyFAI lists: python-biom-format lists: pyranges lists: purple lists: PyCogent lists: qtlreaper lists: qcumber lists: python-bx lists: pyomo lists: pycoqc lists: Proteinortho lists: DendroPy lists: qtltools lists: pyscanfcs lists: rambo-k lists: qcat lists: rasmol lists: rampler lists: raccoon lists: ragout lists: rapmap lists: quicktree lists: Raster3D lists: AnnotationHub lists: Rate4Site lists: altcdfenvs lists: annotate lists: biomformat lists: Biobase lists: affyio lists: bridgedbr lists: BiocGenerics lists: biovizBase lists: genefilter lists: CNEr lists: bsgenome lists: geneplotter lists: ctc lists: genomicalignments lists: go.db lists: genomeinfodb lists: hypergraph lists: gviz lists: groHMM lists: mergeomics lists: impute lists: makecdfenv lists: multiassayexperiment lists: qusage lists: mutationalpatterns lists: metagenomeseq lists: preprocesscore lists: pwmenrich lists: rbgl lists: htsfilter lists: nanostringqcpro lists: rgsepd lists: rcpi lists: pcaMethods lists: adephylo lists: rsamtools lists: savr lists: tfbstools lists: xvector lists: ade4 lists: biwt lists: beeswarm lists: cmprsk lists: alakazam lists: bio3d lists: Epi lists: BoolNet lists: DT lists: DoseFinding lists: itertools lists: fitdistrplus lists: fitbitscraper lists: dynamicTreeCut lists: epibasix lists: distory lists: forecast lists: incidence lists: hms lists: nmf lists: mediana lists: genetics lists: lexrankr lists: psychometric lists: optimalcutpoints lists: proc lists: pcapp lists: parmigene lists: rann lists: phylobase lists: psyphy lists: psychotree lists: rnexml lists: rook lists: rpact lists: tigger lists: robustrankaggreg lists: qqman lists: rwave lists: shazam lists: rsvd lists: rncl lists: rotl lists: rniftilib lists: sjplot lists: wavethresh lists: stringi lists: snowfall lists: waveslim lists: surveillance lists: tsne lists: webgestaltr lists: resfinder lists: readucks lists: recan lists: roadtrips lists: readseq lists: roguenarok lists: rtax lists: rgfa lists: ruby-bio lists: runcircos-gui lists: sailfish lists: samclip lists: saint lists: sambamba lists: seqmagick lists: sbmltoolbox lists: seq-seq-pan lists: seqsero lists: seqwish lists: shapeit4 lists: sepp lists: crb-blast lists: sigma-align lists: sibsim4 lists: signalalign lists: sibelia lists: shiny-server lists: sistr lists: skesa lists: sigviewer lists: snpomatic lists: spaced lists: sitplus lists: sofa-apps lists: sra-toolkit lists: strap-base lists: sparta lists: swarm lists: sourmash lists: surankco lists: streamlit lists: tab2mage lists: sumaclust lists: sweed lists: tacg lists: zAlign lists: tiddit lists: Workrave lists: sprai lists: VolPack lists: XMedCon lists: Yanosim lists: Yanagiba lists: libswiss-perl lists: yaha lists: VisIt lists: VelvetOptimiser lists: variation graph lists: vcfanno lists: VarMatch lists: VirulenceFinder lists: CCS lists: VADR lists: VARNA lists: VMD lists: FISH lists: trace2dbEST lists: TREE-PUZZLE lists: umis lists: Trinculo lists: toil lists: TRANSIT lists: toppred lists: Unicycler lists: TM-align lists: Tn-seq explorer lists: Tombo lists: TopHat-Recondition is related to: FreeContact is parent organization of: neurodebian				Free, Freely available	nlx_151598			SCR_006638	Debian - The universal operating system, Debian GNU/Linux	2026-09-12 12:56:43	52
Integrated Data Annotation Resource Report Resource Website	Integrated Data Annotation (RRID:SCR_010499)		data or information resource, database	THIS RESOURCE IS NO LONGER IN SERVICE. Documented September 15, 2017. A virtual database of annotations between databases.	annotation	uses: Gene Expression Omnibus uses: Gemma uses: RanchoBiosciences uses: Roadmap Epigenomics Project				THIS RESOURCE IS NO LONGER IN SERVICE	nlx_158103			SCR_010499		2026-09-12 01:02:03	0
Phenocarta Resource Report Resource Website 1+ mentions	Phenocarta (RRID:SCR_016273)		data analysis software, data or information resource, data processing software, database, software application, software resource	Database that consolidates information on genes and phenotypes across multiple resources and allows tracking and exploring of the associations. Part of Gemma, a web site, database and a set of tools for the meta-analysis, re-use and sharing of genomics data.	phenotype, meta, analysis, genome, gene, expression	is related to: Gemma has parent organization: University of British Columbia; British Columbia; Canada			PMID:22782548	Free, Freely available		http://pavlab.msl.ubc.ca/software-and-resources/		SCR_016273	Phenocarta	2026-09-12 12:58:37	2
University of British Columbia; British Columbia; Canada Resource Report Resource Website 10+ mentions	University of British Columbia; British Columbia; Canada (RRID:SCR_011614)		university	Public research university with campuses in Vancouver and Kelowna, British Columbia.		is related to: GOTrack is related to: ModelMatcher is parent organization of: RNA STRAND-The RNA secondary STRucture and statistical ANalysis Database is parent organization of: Cerebellar Gene Regulation in Time and Space Database is parent organization of: RAVEN is parent organization of: Automated recognition of brain region mentions in neuroscience literature. is parent organization of: Pleiades Promoter Project: Genomic Resources Advancing Therapies for Brain Disorders is parent organization of: Semantic Automated Discovery and Integration is parent organization of: CanEuCre is parent organization of: INMEX is parent organization of: NeuroDevNet is parent organization of: PAZAR is parent organization of: ErmineJ is parent organization of: University of British Columbia Department of Pharmacology is parent organization of: Gist is parent organization of: Gemma is parent organization of: UBC National Core for Neuroethics is parent organization of: Neuroanatomy at UBC is parent organization of: TopFIND is parent organization of: Matrix2png is parent organization of: CNA-HMMer is parent organization of: SNVMix is parent organization of: CoNAn-SNV is parent organization of: HLWIKI Canada is parent organization of: Pseudomonas Genome Database is parent organization of: InnateDB is parent organization of: Vancouver Prostate Centre Laboratory for Advanced Genome Analysis is parent organization of: Vancouver Prostate Centre Labs and Facilities is parent organization of: Djavad Mowafaghian Centre for Brain Health is parent organization of: Fast T2 relaxation data analysis with stimulated echo correction and non-local spatial regularisation is parent organization of: Phenocarta is parent organization of: University of British Columbia NeuroImaging and NeuroComputation Centre Core Facility is parent organization of: University of British Columbia Vancouver Bioimaging Core Facility is parent organization of: University of British Columbia Borgland Brain DNA and Tissue Bank Core Facility is parent organization of: Pathfinder project is parent organization of: Automated Home-Cage Functional Imaging project is parent organization of: Homecage Task Training and Mesoscale Imaging project is parent organization of: University of British Columbia Gut4Health Microbiome Core Facility is parent organization of: University of British Columbia LSI Imaging Core Facility is parent organization of: University of British Columbia Advanced Research Computing Core Facility is parent organization of: University of British Columbia MRI Research Core Facility is parent organization of: Metapathways is parent organization of: University of British Columbia BCCHR Imaging Core Facility is parent organization of: University of British Columbia BCCHR Histology Core Facility is parent organization of: University of British Columbia BCCHR Analytical Core for Metabolomics and Nutrition Core Facility is parent organization of: University of British Columbia BCCHR Flow Cytometry Core Facility is parent organization of: University of British Columbia Molecular and Advanced Pathology Core Facility					, GRID grid.17091.3e, Wikidata Q391028, ISNI 0000 0001 2288 9830, Crossref Funder ID 501100005247, nlx_18099	https://ror.org/03rmrcq20		SCR_011614	UBC	2026-09-12 01:03:35	12

Can't find your Tool?

We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.

Can't find the RRID you're searching for? X

Searching the RRID Resource Information Network

Our searching services are busy right now. Please try again later

About

Community Resources

More Resources

Literature

Tools Select Another Resource Report Type

Options

Facets

Recent searches

9 Results - per page

Show More Columns | Download 9 Result(s)

NIDDK Information Network Resources

Navigation

Logging in and Registering

Searching

Collections

Facets

Further Questions

About

Recent News Entries

Contact Us

Stay Connected

SciCrunch

Searching the RRID Resource Information Network

Our searching services are busy right now. Please try again later

Log in

Leaving Community

About

Community Resources

More Resources

Literature

Preparing word cloud

Tools Select Another Resource Report Type

Options

Facets

Recent searches

Can't find your tool? Help us by registering it into the system - it's easy. Register it with the SciCrunch Registry. An RRID will be generated in 1-2 business day.

9 Results - 20 50 100 per page

Facet Graph

NIDDK Information Network Resources

Navigation

Logging in and Registering

Searching

Collections

Facets

Further Questions

About

Recent News Entries

Contact Us

Stay Connected

SciCrunch

9 Results - per page