Biological Magnetic Resonance Data Bank (BMRB)
Resource Report
Resource Website
500+ mentions
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Biological Magnetic Resonance Data Bank (BMRB) (RRID:SCR_002296)
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BioMagResBank, BMRB
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data or information resource, data repository, database, service resource, storage service resource
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Public depository that collects, annotates, archives, and disseminates important spectral and quantitative data derived from nuclear magnetic resonance spectroscopic investigations of biological macromolecules and metabolites. Provides reference information and maintains a collection of NMR pulse sequences and computer software for biomolecular NMR.
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magnetic resonance, data bank, depository, database, data repository, spectral data, quantitative data, nmr, spectroscopy, macromolecule, metabolite, metabolomics, FASEB list
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is recommended by: NIDDK Information Network (dkNET)
is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
is listed by: DataCite
is listed by: 3DVC
is listed by: re3data.org
is related to: Worldwide Protein Data Bank (wwPDB)
is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
is related to: Nucleic Acid Database
is related to: DNA DataBank of Japan (DDBJ)
is related to: PDBe - Protein Data Bank in Europe
is related to: NRG-CING
is related to: Worldwide Protein Data Bank (wwPDB)
is related to: PDBj - Protein Data Bank Japan
is related to: CCPN Data Model
has parent organization: University of Wisconsin-Madison; Wisconsin; USA
is parent organization of: NMR Restraints Grid
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NLM LM05799 |
PMID:18288446
PMID:17984079
PMID:12766409
PMID:36478084 |
Free, Freely available |
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r3d100010191, nif-0000-21058 |
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SCR_002296 |
BMRB, BioMagResBank, Biological Magnetic Resonance DataBank, BioMag Res Bank |
2026-09-12 12:55:39 |
790 |
NMR Restraints Grid
Resource Report
Resource Website
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NMR Restraints Grid (RRID:SCR_006127)
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NMR Restraints Grid
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data or information resource, database, image collection
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Original NMR (nuclear magnetic resonance) data as collected for over 2500 protein and nucleic acid structures with corresponding PDB entries. In addition to the original restraints, most of the distance, dihedral angle and RDC restraint data (>85%) were parsed, and those in over 500 entries were converted and filtered. The converted and filtered data sets constitute the Database Of Converted Restraints (DOCR) and the Filtered Restraints Database (FRED) respectively as described in the references. There are 9,672,968 parsed constraints in 7159 entries. (Mar. 2013)
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nmr, biomolecule, structure, magnetic resonance, database of converted restraint, filtered restraints database, fred, mri, protein, nucleic acid
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is related to: NRG-CING
is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
has parent organization: Biological Magnetic Resonance Data Bank (BMRB)
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European Union FP6 contract QLG2-CT-2000-01313;
NLM LM05799 |
PMID:12766409
PMID:16041478 |
Please acknowledge the references in publications where the data from this site have been utilized. |
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nlx_151606 |
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SCR_006127 |
BMRB NMR Restraints Grid |
2026-09-12 12:56:35 |
0 |
DataCite
Resource Report
Resource Website
50+ mentions
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DataCite (RRID:SCR_004139)
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nonprofit organization
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Platform for storing, finding and accessing data that provides a service for data centres to mint DOIs and store associated metadata. Their goals are to establish easier access to scientific research data on the Internet, increase acceptance of research data as legitimate, citable contributions to the scientific record and support data archiving that will permit results to be verified and re-purposed for future study. DataCite is global, with member institutions offering services and advice directly where they are needed by the researchers. While datasets are shared and accessed globally, researchers work within national funding and organizational frameworks. It therefore operates globally, with national representation. The DataCite Metadata Scheme is a list of core metadata properties chosen for the accurate and consistent identification of data for citation and retrieval purposes, along with recommended use instructions.
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data citation, data archiving
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is used by: California Digital Library
is used by: Office of Scientific and Technical Information
is used by: BGI; Shenzhen; China
is used by: ETH Zurich; Zurich; Switzerland
is used by: French National Center for Scientific Research
is used by: Inter-university Consortium for Political and Social Research (ICPSR)
is used by: University of Tartu; Tartu; Estonia
is used by: Open Data Commons for Traumatic Brain Injury
is used by: SPARC Portal
is used by: Pacific Northwest National Laboratory DataHub: Scientific Data Repository
is used by: COVID-19 Data Repository
is used by: NIDDK Central Repository
is used by: Marine Geoscience Data System
is used by: National Addiction and HIV Data Archive Program (NAHDAP)
is used by: Coherent X-Ray Imaging Data Bank (CXIDB)
lists: Biological Magnetic Resonance Data Bank (BMRB)
lists: ArrayExpress
lists: GigaDB
lists: Atlantic Canada Conservation Data Centre
lists: Agri-environmental Research Data Repository
lists: Australian Antarctic Data Centre
lists: TARDIS
lists: BioModels
lists: Addgene
lists: BOLD
lists: FigShare
lists: Standards-based Infrastructure with Distributed Resources
lists: TAIR
lists: Biomedical Informatics Research Network
lists: 4TU.Datacentrum
lists: Amazon Web Services Public Data Sets
lists: Atlas of Living Australia
lists: Adult Blood Lead Epidemiology and Surveillance Interactive Database
lists: Biological General Repository for Interaction Datasets (BioGRID)
lists: Africa Centre for Health and Population Studies
lists: Biologic Specimen and Data Repository Information Coordinating Center (BioLINCC)
lists: STRENDA
lists: Brain Image Library
lists: CaltechDATA
lists: Code Ocean
lists: CoMSES Net
lists: DataONE
lists: DANS
lists: GBIF - Global Biodiversity Information Facility
lists: German Collection of Microorganisms and Cell Cultures
lists: Distributed Archives for Neurophysiology Data Integration
lists: INPTDAT
lists: Mendeley Data
lists: Lamont-Doherty Core Repository
lists: MorphoBank
lists: Incorporated Research Institutions for Seismology
lists: PhysioNet
lists: Open Science Framework
lists: Simtk.org
lists: Synapse
lists: OpenNeuro
lists: Vivli
lists: Cancer Imaging Archive (TCIA)
lists: UK Data Archive
lists: Dryad Digital Repository
lists: Influenza Research Database (IRD)
lists: ZENODO
lists: National Snow and Ice Data Center
lists: ResearchGate
lists: Project Data Sphere
lists: Qualitative Data Repository
lists: Virus Pathogen Resource (ViPR)
lists: Cambridge Structural Data Base
lists: 4TU.ResearchData
lists: Aperta Turkey Open Archive
lists: Arch
lists: Aston Data Explorer
lists: Antarctic Meteorological Research and Data Center Repository
lists: Polar Data Catalogue
lists: Aston Publications Explorer
lists: Astrobiology Habitable Environments Database
lists: Australian Ocean Data Network
lists: B2SHARE Eudat
lists: Barbara A. Mikulski Archive for Space Telescopes
lists: Australian Data Archive
lists: BioHeritage National Science Challenge Data Repository
lists: Abertay University Datasets
lists: Birkbeck Research Data
lists: BioData Management Portal
lists: Bolin Centre Database
lists: BRAIN Commons
lists: SCAR Antarctic Biodiversity Portal
lists: Brown Digital Repository
lists: Canadian Polar Data Network
lists: Berkeley Seismological Laboratory
lists: Biocode Commons
lists: DMPTool
lists: California Digital Library
lists: eScholarship
lists: Center for Research in Biological Systems
lists: CCHDO
lists: California Coastal Atlas
lists: Comprehensive Everglades Restoration Plan
lists: CRCNS
lists: DataMares
lists: Drug Design Data Resource
lists: EarthCube
lists: Geotechnical Extreme Events Reconnaissance
lists: iDASH
lists: Kavli Institute for Theoretical Physics Online Talks
lists: EarthRef
lists: Engineering Biology Research Consortium
lists: Lawrence Berkeley National Laboratory
lists: LBNL OpenMSI
lists: National Center for Ecological Analysis and Synthesis
lists: Nightingale Open Science
lists: Marine and Coastal Research Institute of Columbia; Santa Marta; Colombia
lists: Open Tree of Life
lists: Open Data Commons for Spinal Cord Injury
lists: Arctic Data Center
lists: Ocean Protection Council
lists: Open Context
lists: Partnership for Interdisciplinary Studies of Coastal Oceans
lists: Triton Shared Computing Cluster
lists: OpenTopography
lists: UC Berkeley Research IT
lists: Center for Effective Global Action
lists: SDSC Center for Applied Internet Data Analysis
lists: Project Production Systems Laboratory
lists: UC Davis eScholarship
lists: UC Davis Social Science Data Service
lists: University of California Press
lists: UC Natural Reserve System
lists: University of California at Riverside; California; USA
lists: University of California at San Diego; California; USA
lists: UC Medical Humanities Consortium
lists: Coastal Data Information Program
lists: UCSC Library
lists: University of California at Santa Barbara; California; USA
lists: University of California at Los Angeles; California; USA
lists: Center for Computational Mass Spectrometry
lists: Metabolomics Workbench
lists: UCSD WIFIRE
lists: UC Davis Library
lists: Network Data Exchange (NDEx)
is listed by: FORCE11
is affiliated with: RAiD
is related to: Redivis
is parent organization of: DataCite Ontology
is parent organization of: ODIN
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Public |
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grid.475826.a, nlx_16255, Wikidata: Q821542 |
https://ror.org/04wxnsj81 |
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SCR_004139 |
datacite.org, Data Cite |
2026-09-12 12:56:09 |
64 |
PDBe - Protein Data Bank in Europe
Resource Report
Resource Website
50+ mentions
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PDBe - Protein Data Bank in Europe (RRID:SCR_004312)
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PDBe
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data or information resource, data repository, database, service resource, storage service resource
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The European resource for the collection, organization and dissemination of data on biological macromolecular structures. In collaboration with the other worldwide Protein Data Bank (wwPDB) partners - the Research Collaboratory for Structural Bioinformatics (RCSB) and BioMagResBank (BMRB) in the USA and the Protein Data Bank of Japan (PDBj) - they work to collate, maintain and provide access to the global repository of macromolecular structure data. The main objectives of the work at PDBe are: * to provide an integrated resource of high-quality macromolecular structures and related data and make it available to the biomedical community via intuitive user interfaces. * to maintain in-house expertise in all the major structure-determination techniques (X-ray, NMR and EM) in order to stay abreast of technical and methodological developments in these fields, and to work with the community on issues of mutual interest (such as data representation, harvesting, formats and standards, or validation of structural data). * to provide high-quality deposition and annotation facilities for structural data as one of the wwPDB deposition sites. Several sophisticated tools are also available for the structural analysis of macromolecules.
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x-ray, nmr, cryo-em, hybrid method, dna, protein, rna, sugar, ligand, virus, compound, fold, enzyme, 3d spatial image, structure, macromolecule, protein-protein interaction, gold standard, bio.tools
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is recommended by: NIDDK Information Network (dkNET)
is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
is listed by: re3data.org
is listed by: bio.tools
is listed by: Debian
is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
is related to: DNA DataBank of Japan (DDBJ)
is related to: EMDataResource.org
is related to: Worldwide Protein Data Bank (wwPDB)
is related to: Biological Magnetic Resonance Data Bank (BMRB)
is related to: DNA DataBank of Japan (DDBJ)
is related to: Worldwide Protein Data Bank (wwPDB)
is related to: PDBj - Protein Data Bank Japan
is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
has parent organization: European Bioinformatics Institute
is parent organization of: Electron Microscopy Data Bank at PDBe (MSD-EBI)
works with: MOLEonline
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European Molecular Biology Laboratory; Heidelberg; Germany ;
Wellcome Trust ;
BBSRC ;
NIH ;
European Union ;
MRC ;
CCP4 |
PMID:21045060
PMID:21460450
PMID:19858099 |
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r3d100012791, biotools:pdbe, nlx_32372 |
https://bio.tools/pdbe, https://doi.org/10.17616/R3J226 |
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SCR_004312 |
Protein DataBank Europe, Protein DataBank in Europe, PDBe, Protein Data Bank in Europe, Protein Data Bank Europe, Macromolecular Structure Database |
2026-09-12 12:56:11 |
55 |
University of Wisconsin-Madison; Wisconsin; USA
Resource Report
Resource Website
10+ mentions
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University of Wisconsin-Madison; Wisconsin; USA (RRID:SCR_008282)
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UW-Madison
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university
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University of Wisconsin–Madison is a public research university in Madison, Wisconsin.UW–Madison is official state university of Wisconsin, and the flagship campus of the University of Wisconsin System. The UW is one of America's Public Ivy universities, which refers to top public universities in the United States capable of providing a collegiate experience comparable with the Ivy League.
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uses: LabArchives
is affiliated with: Big Ten Cancer Research Consortium
is affiliated with: PAMGO
is related to: ONE Study
is related to: Clinical and Translational Science Awards Consortium
is related to: LabArchives
has parent organization: University of Wisconsin System; Wisconsin; USA
is parent organization of: PSGInfer
is parent organization of: RSEM
is parent organization of: Database Enabled Code for Ideal Probe Hybridization Employing R
is parent organization of: National Magnetic Resonance Facility at Madison
is parent organization of: UW-Madison Neuroscience Resources
is parent organization of: ASAP
is parent organization of: Biological Magnetic Resonance Data Bank (BMRB)
is parent organization of: Chemistry Molecular Models
is parent organization of: DTI-TEMPLATE-RHESUS-MACAQUES
is parent organization of: Amplify
is parent organization of: Mindtouch DekiWiki
is parent organization of: EBSeq
is parent organization of: WHAM
is parent organization of: Comparative Mammalian Brain Collections
is parent organization of: Madison Metabolomics Consortium Database
is parent organization of: Callicam
is parent organization of: E. coli Genome project
is parent organization of: CESG
is parent organization of: LOCI
is parent organization of: Rhesus Macaque Atlases for Functional and Structural Imaging Studies
is parent organization of: Puerto Rican Elderly: Health Conditions
is parent organization of: DTI Blog
is parent organization of: HI-SPEED Software Packets
is parent organization of: Wisconsin White Matter Hyperintensities Segmentation Toolbox
is parent organization of: dPeak
is parent organization of: MOSAiCS
is parent organization of: NucDe
is parent organization of: ABNER
is parent organization of: UW-Madison Cardiovascular Physiology Core Facility
is parent organization of: UW-Madison Mass Spectrometry/Proteomics Facility
is parent organization of: University of Wisconsin - Madison Labs and Facilities
is parent organization of: Waisman Biomanufacturing
is parent organization of: Mauve
is parent organization of: Wisconsin National Primate Research Center
is parent organization of: RSEM
is parent organization of: University of Wisconsin School of Pharmacy
is parent organization of: National Survey of Families and Households
is parent organization of: Essential genes in E. coli
is parent organization of: ScienceExchange
is parent organization of: LAMHDI: The Initiative to Link Animal Models to Human DIsease
is parent organization of: National Survey of Midlife Development in the United States
is parent organization of: EDGE: Environment, Drugs and Gene Expression
is parent organization of: Comparative Biomedical Sciences Graduate Program
is parent organization of: Multivariate General Linear Models (MGLM) on Riemannian Manifolds
is parent organization of: Efficient Permutation Testing
is parent organization of: O'Brien Center for Benign Urologic Research at University of Wisconsin-Madision and University of Massachusetts-Boston Rodent Urinary Function Testing Core
is parent organization of: Attie Lab Diabetes Database
is parent organization of: DETONATE
is parent organization of: Real-Time Experimental Control with Graphical User Interface
is parent organization of: Wisconsin-Madison University Biotechnology Center Gene Expression Center Core Facility
is parent organization of: University of Wisconsin-Madison Advanced Genome Editing Laboratory
is parent organization of: Diabetes Data and Hypothesis Hub
is parent organization of: University of Wisconsin-Madison Biochemistry Optical Core Facility
is parent organization of: XDD
is parent organization of: University of Wisconsin Madison Biotechnology Center Animal Models Core Facility
is parent organization of: County Health Rankings and Roadmaps
is parent organization of: University of Wisconsin-Madison Intellectual and Developmental Disabilities Models Core Facility
is parent organization of: Wisconsin National Primate Research Center Pathology Services Core Facility
is parent organization of: University of Wisconsin Madison Radiopharmaceutical Analytics and Specimen Research Lab Core Facility
is parent organization of: University of Wisconsin Madison Newcomb Imaging Center NIC Core Facility
is parent organization of: University of Wisconsin-Madison Translational Research Initiatives in Pathology Laboratory (TRIPath) Core Facility
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ISNI:0000 0001 2167 3675, Crossref funder ID:100007015, nlx_65725, grid.14003.36, Wikidata:Q838330 |
https://ror.org/01y2jtd41 |
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SCR_008282 |
Madison, University of Wisconsin-Madison, Wisco, UW Madison, The University of Wisconsin�Madison |
2026-09-12 12:57:02 |
21 |
3DVC
Resource Report
Resource Website
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3DVC (RRID:SCR_001377)
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3DVC
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community building portal, data or information resource, portal
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THIS RESOURCE IS NO LONGER IN SERVICE, confirmed by curator 11/21/2018; Community of researchers attempting to build a comprehensive virtual cell model. The 3DVC will do for cell biology what the Large Hadron Collider (LHC) does for particle physics, but through a virtual rather than physical resource. It will bring together collaborators around a shared infrastructure to advance the field through efficient groundbreaking science and technology, the results of which will be broadly disseminated to an audience ranging from K12 to professionals. The 3DVC is committed to open science, yet strives for sustainability through new business models that leverages that open content.
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cell, model, biological structure, molecule
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lists: Albinism database
lists: ButterflyBase
lists: G2P Knowledge Centre
lists: Bio-Job.org
lists: RettBASE: IRSF MECP2 Variation Database
lists: Resource for Biocomputing Visualization and Informatics
lists: National Center for Integrative Biomedical Informatics
lists: Genome Network Platform
lists: NeuroExplorer
lists: Open Provenance Model
lists: BarleyBase
lists: BioModels
lists: Arabidopsis Reactome
lists: MEDLINE
lists: bioDBcore
lists: GermOnline
lists: GlycoMapsDB
lists: SNPHunter
lists: Allen Institute for Brain Science Sleep Study
lists: Coddle-Codons Optimized to Discover Deleterious LEsions
lists: MicroArray and Gene Expression Markup Language
lists: Fungal Genome Initiative
lists: EMDataResource.org
lists: University of Southern California LONI Software
lists: Ontology Development and Information Extraction
lists: Software Distribution Sets
lists: L-Measure
lists: UCSF Chimera
lists: Zebrafish Neurophenome Project Database
lists: Standards-based Infrastructure with Distributed Resources
lists: HapMap 3 and ENCODE 3
lists: NCBI BioProject
lists: SEQanswers Wiki
lists: NIF Data Federation
lists: SMD
lists: SoyBase
lists: modelcrop.org
lists: BiGG Database
lists: FSST - Functional Similarity Search Tool
lists: LHP LHDL
lists: Open Provenance Model Vocabulary
lists: DiseaseMeth
lists: neuroVIISAS
lists: Predictive Networks
lists: SitEx
lists: NRCAM
lists: DisGeNET
lists: MCMBB
lists: BARD
lists: Mouse Genome Informatics (MGI)
lists: European Nucleotide Archive (ENA)
lists: Comparative Toxicogenomics Database (CTD)
lists: PomBase
lists: Stanford University HIV Drug Resistance Database
lists: Database of Chemical Compounds and Reactions in Biological Pathways
lists: UCSD-Nature Signaling Gateway Molecule Pages
lists: IntAct
lists: The WWW Virtual Library: Model Organisms
lists: Helicobacter Pylori Database of Protein Interactomes
lists: Genes to Cognition: Neuroscience Research Programme
lists: neuroConstruct
lists: ModelDB
lists: 3DViewnix
lists: TMRPres2D
lists: Ikaros Project
lists: Dockground: Benchmarks, Docoys, Templates, and other knowledge resources for DOCKING
lists: Interagency Modeling and Analysis Group
lists: Annozilla (Annotea on Mozilla)
lists: Artificial Selected Proteins/Peptides Database
lists: Cancer Chromosomes
lists: CATMA - Complete Arabidopsis Transcriptome MicroArray
lists: Combinatorial Extension (CE)
lists: ChemDB: The UC Irvine ChemDB
lists: CluSTr
lists: CTDatabase
lists: DRC - Database of Ribosomal Crosslinks
lists: Gene Expression in Tooth Database
lists: GenoBase
lists: GPX-Macrophage
lists: Hetero-compound Information Centre- Uppsala
lists: IMG
lists: InSatDb
lists: InterDom
lists: IPD-HPA - Human Platelet Antigens
lists: Max Planck Unified Proteome Database
lists: Molecular Modelling DataBase
lists: MegaMotifbase
lists: Metalloprotein Site Database
lists: MitoDat - Mendelian Inheritance and the Mitochondrion
lists: Madison Metabolomics Consortium Database
lists: Olfactory Receptor DataBase
lists: SUPERFAMILY
lists: EyeBrowse
lists: Allen Institute Mouse Diversity Study
lists: BIRD - Bio Info R and D
lists: Bioinformatics Links Directory
lists: Electroencephalogram Database: Prediction of Epileptic Seizures
lists: Human Protein-Protein Interaction Mining Tool
lists: Interagency Modeling and Analysis Group and Multi-scale Modeling Consortium Wiki
lists: Systems Biology Workbench
lists: CellML
lists: MathML
lists: AraCyc
lists: Biochemical Pathways database
lists: CellML Model Repository
lists: Cytokine Family Database
lists: Bacterial Genomes
lists: U.S. Pig Genome Project
lists: ComBase: A Combined Database For Predictive Microbiology
lists: GeneWindow
lists: Comprehensive Systems-Biology Database
lists: Candidate Genes to Inherited Diseases
lists: MeGX
lists: Mammalian Phosphorylation Resource
lists: Efficient Mixed-Model Association
lists: Proteome Analyst PA-GOSUB
lists: PubCrawler
lists: Conical: The Computational Neuroscience Class Library
lists: Gene Expression Profile Analysis Suite
lists: Adaptive Poisson-Boltzmann Solver
lists: Aggrescan: The Hot Spot Finder
lists: Distributed Annotation System
lists: COILS: Prediction of Coiled Coil Regions in Proteins
lists: DNAWorks at Helix Systems
lists: Microarray DB
lists: Gene Relationships Across Implicated Loci
lists: SEQtools
lists: DeRisi Lab
lists: Protein Subcellular Location Image Database
lists: Open Information Integration
lists: Metagenomics Program at JGI
lists: BrainPeps
lists: EGAN: Exploratory Gene Association Networks
lists: CBioC
lists: OrChem
lists: Generic GO Term Finder
lists: G-node portal electrophysiology data sharing
lists: LegumeIP
lists: Roadmap Epigenomics Project
lists: TrakEM2
lists: ATID: Alternative Translational Initiation Database
lists: linked life data - a semantic data integration platform for the biomedical domain
lists: Crux tandem mass spectrometry analysis software
lists: CellProfiler Analyst
lists: Scirus - for scientific information only
lists: SRS
lists: KEGG
lists: Antibodypedia
lists: SWISS-MODEL Repository
lists: BTKbase
lists: ExTopoDB
lists: MINAS - Metal Ions in Nucleic AcidS
lists: Tripod
lists: NIH electronic Research Materials catalogue
lists: Alliance for Cellular Signaling Molecule Pages Database
lists: Death Domain database
lists: Cube-DB
lists: OntoQuest
lists: EASE: the Expression Analysis Systematic Explorer
lists: Greglist
lists: Chloroplast Genome Database
lists: Montage RTS2000
lists: BGI-RISe - Beijing Genomics Institute Rice Information System
lists: ApiDB CryptoDB
lists: Chilibot: Gene and Protein relationships from MEDLINE
lists: AutDB
lists: DAVID
lists: Dataverse Network Project
lists: Binding MOAD
lists: Biological Magnetic Resonance Data Bank (BMRB)
lists: RNAhybrid
lists: RegulonDB
lists: Artemis: Genome Browser and Annotation Tool
lists: Genomedata
lists: CATSS - Child and Adolescent Twin Study in Sweden
lists: Viking Viewer for Connectomics
lists: SpliceDB
lists: Galaxy
lists: SPM
lists: Hyper Cell Line Database
lists: MeGX
has parent organization: University of California at San Diego; California; USA
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NSF 1216893 |
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THIS RESOURCE IS NO LONGER IN SERVICE |
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nlx_152536 |
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http://www.3dvcell.org/conference-toward-3d-virtual-cell |
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SCR_001377 |
3D Virtual Cell |
2026-09-12 12:55:25 |
0 |
NIDDK Information Network (dkNET)
Resource Report
Resource Website
10+ mentions
|
NIDDK Information Network (dkNET) (RRID:SCR_001606)
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dkNET
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community building portal, data or information resource, database, portal
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The NIDDK Information Network (dkNET) is a community-based network to serve needs of basic and clinical investigators that includes large pools of data and research resources relevant to mission of National Institute of Diabetes and Digestive and Kidney Disease.
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dknet, data resource, diabetes, kidney, liver, disease, urology, hematology, digestive, nutrition, endocrine, obesity, metabolic
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uses: NIDDK Central Repository
uses: Addgene
uses: NIF Data Federation
uses: Antibody Registry
uses: Nuclear Receptor Signaling Atlas
uses: GenitoUrinary Development Molecular Anatomy Project
uses: Diabetic Complications Consortium
uses: National Mouse Metabolic Phenotyping Centers
uses: T1DBase
uses: Beta Cell Biology Consortium
uses: Grants.gov
uses: dkNET Community Pilot Funding Opportunities
uses: Integrated Grants
uses: ClinicalTrials.gov
uses: Integrated Animals
uses: Intestinal Stem Cell Consortium
recommends: Biological General Repository for Interaction Datasets (BioGRID)
recommends: Cell Image Library (CIL)
recommends: Accelerating Medicines Partnership Type 2 Diabetes Knowledge Portal (AMP-T2D)
recommends: NIDDK Central Repository
recommends: Network Data Exchange (NDEx)
recommends: PeptideAtlas
recommends: International Mouse Phenotyping Consortium (IMPC)
recommends: FlyBase
recommends: Metabolomics Workbench
recommends: Zebrafish Information Network (ZFIN)
recommends: Mouse Genome Informatics (MGI)
recommends: Database of Interacting Proteins (DIP)
recommends: UniProt
recommends: PhysioNet
recommends: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
recommends: ClinicalTrials.gov
recommends: dbVar
recommends: Analysis, Visualization, and Informatics Lab-space (AnVIL)
recommends: WormBase
recommends: dbSNP
recommends: GenBank
recommends: DNA DataBank of Japan (DDBJ)
recommends: Database of Genomic Variants Archive (DGVa)
recommends: NCBI Sequence Read Archive (SRA)
recommends: MGnify
recommends: European Variation Archive (EVA)
recommends: European Nucleotide Archive (ENA)
recommends: Gene Expression Omnibus (GEO)
recommends: NCBI Assembly Archive Viewer
recommends: Protein Circular Dichroism Data Bank (PCDDB)
recommends: miRBase
recommends: Trace Archive
recommends: UniProtKB
recommends: Coherent X-Ray Imaging Data Bank (CXIDB)
recommends: Electron Microscopy Data Bank at PDBe (MSD-EBI)
recommends: Worldwide Protein Data Bank (wwPDB)
recommends: Biological Magnetic Resonance Data Bank (BMRB)
recommends: Crystallography Open Database (COD)
recommends: PDBj - Protein Data Bank Japan
recommends: Inorganic Crystal Structure Database (ICSD)
recommends: Structural Biology Grid
recommends: NCBI database of Genotypes and Phenotypes (dbGap)
recommends: ArrayExpress
recommends: EMDataResource.org
recommends: Cambridge Crystallographic Data Centre (CCDC)
recommends: PDBe - Protein Data Bank in Europe
recommends: Japanese Genotype-phenotype Archive (JGA)
recommends: PubChem BioAssay
recommends: European Genome phenome Archive
recommends: GenomeRNAi
recommends: ProteomeXchange
recommends: MetaboLights
recommends: IntAct
recommends: FLOWRepository
recommends: Proteomics Identifications (PRIDE)
recommends: Global Proteome Machine Database (GPM DB)
recommends: Kinetic Models of Biological Systems (KiMoSys)
recommends: ChEMBL
recommends: Cancer Imaging Archive (TCIA)
recommends: Image Data Resource (IDR)
recommends: The Immunology Database and Analysis Portal (ImmPort)
recommends: PubChem Substance
recommends: NeuroMorpho.Org
recommends: Cancer Nanotechnology Laboratory (caNanoLab)
recommends: SICAS Medical Image Repository
recommends: Mass spectrometry Interactive Virtual Environment (MassIVE)
recommends: Dryad Digital Repository
recommends: ZENODO
recommends: NIH Figshare Archive
recommends: STRENDA
recommends: OpenNeuro
recommends: Influenza Research Database (IRD)
recommends: 1000 Functional Connectomes Project
recommends: Mendeley Data
recommends: Open Science Framework
recommends: Dataverse Network Project
recommends: NIMH Data Archive
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lists: Washington University Center for Diabetes Translation Research Dissemination and Implementation in Diabetes Research Core Facility
lists: Washington University Center for Diabetes Translation Research Health Communication and Health Literacy Core Facility
lists: Washington University Center for Diabetes Translation Research Health Informatics in Diabetes Research Core
lists: USC Liver Transplant Program and Center for Liver Disease Analytical Metabolic Instrumentation Core
lists: Washington University Center for Diabetes Translation Research Policy and Systems Science Analysis in Diabetes Research Core
lists: USC Liver Transplant Program and Center for Liver Disease Cell and Tissue Imaging Core
lists: Washington University Center for Diabetes Translation Research Research Partnerships with American Indian/Alaskan Native Communities Core
lists: Washington University Center for Diabetes Translation Research
lists: USC Liver Transplant Program and Center for Liver Disease Cell Separation and Culture Core
lists: Washington University Center for Diabetes Translation Research Solutions to Diabetes in Black Americans Core
lists: Washington University Digestive Diseases Research Core Center Administrative and Resource Access Core
lists: USC Liver Transplant Program and Center for Liver Disease Liver Histology Core
lists: USC Liver Transplant Program and Center for Liver Disease
lists: Vanderbilt Center for Diabetes Translation Research Administrative Core
lists: Vanderbilt Center for Diabetes Translation Research Behavioral Intervention Technologies and Services Core
lists: Vanderbilt Center for Diabetes Translation Research Community Engagement Core
lists: Vanderbilt Center for Diabetes Translation Research Community Outreach and Heath Disparities Core
lists: Vanderbilt Center for Diabetes Translation Research
lists: Washington University Digestive Diseases Research Core Center Advanced Imaging and Tissue Analysis Core
lists: Vanderbilt Center for Diabetes Translation Research Translation Methods Core
lists: Washington University Digestive Diseases Research Core Center Biobank Core
lists: Yale Liver Center
lists: Washington University Digestive Diseases Research Core Center Murine Models and Gnotobiotics Core
lists: Yale Liver Center Morphology Core
lists: Washington University Digestive Diseases Research Core Center
lists: Yale Liver Center Clinical and Translational Core
lists: Washington University School of Medicine Diabetes Research Center Cell and Tissue Imaging Core
lists: Yale Liver Center Cellular and Molecular Physiology Core
lists: Washington University School of Medicine Diabetes Research Center Diabetes Models Phenotyping Core Facility
lists: Yale Liver Center Administrative Core
lists: Washington University School of Medicine Diabetes Research Center Translational Diagnostics Core
lists: Yale Diabetes Research Center
lists: Washington University School of Medicine Diabetes Research Center Immunology of Type 1 Diabetes Core
lists: Yale Diabetes Research Center Physiology Core Facility
lists: Washington University School of Medicine Diabetes Research Center Mass Spectrometry Core
lists: Yale Diabetes Research Center Molecular Genetics Core
lists: Yale Diabetes Research Center Molecular Core Facility
lists: Washington University School of Medicine Diabetes Research Center Morphology and Metabolic Analysis Core
lists: Yale Diabetes Research Center Diabetes Translational Core Facility
lists: Washington University School of Medicine Diabetes Research Center
lists: Washington University School of Medicine Diabetes Research Center Transgenic and ES Cell Core
lists: Yale Diabetes Research Center Clinical Metabolism Core Facility
lists: Yale Diabetes Research Center Cell Biology Core Facility
lists: Washington University St. Louis Nutrition Obesity Research Center
lists: Yale Diabetes Research Center Administrative Core Facility
lists: Yale Cooperative Center of Excellence in Hematology Animal Modeling Core
lists: Yale Cooperative Center of Excellence in Hematology
lists: Yale Cooperative Center of Excellence in Hematology Cell Preparation and Analysis Core
lists: Yale Cooperative Center of Excellence in Hematology Imaging Core
lists: Harvard Digestive Disease Center
lists: Harvard Digestive Diseases Center Biomedical CORE B: Microscopy and Histopathology
lists: Harvard Digestive Diseases Center Biomedical CORE C: Epithelial Cell and Mucosal Immunology
lists: Harvard Digestive Diseases Center Biomedical CORE D: Gnotobiotic Mice, Microbiology and Metagenomics
lists: Harvard Digestive Diseases Center Clinical Translational Research Program
lists: Harvard Digestive Diseases Center Bio-Repository and Data Registry for Human Material
lists: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center
lists: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center Integrated Physiology Core
lists: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center Image Core
lists: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center Proteomics Core
lists: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center Translational Research Enhancement Core
lists: UCSF Liver Center
lists: UCSF Liver Center Cell Biology Core
lists: UCSF Liver Center Clinical & Translational Core
lists: UCSF Liver Center Immunology Core
lists: UCSF Liver Center Pathology & Imaging Core
lists: University of Chicago Digestive Diseases Research Core Center
lists: University of Chicago Digestive Diseases Research Core Center Integrated Translational Research Core
lists: University of Chicago Digestive Diseases Research Core Center Administrative Core
lists: University of Chicago Digestive Diseases Research Core Center Tissue Engineering and Cell Models Core
lists: University of Chicago Digestive Diseases Research Core Center Host-Microbe Core
lists: University of Chicago Digestive Diseases Research Core Center Tissue and Cell Imaging Core
lists: University of Michigan Center for Gastrointestinal Research
lists: University of Michigan Center for Gastrointestinal Research Protein Localization, Identification and Folding Core
lists: University of Michigan Center for Gastrointestinal Research In Vivo Animal and Human Studies Core
lists: University of Michigan Center for Gastrointestinal Research Molecular Biology Core
lists: University of Michigan Center for Gastrointestinal Research Microbiome and Metabolomics Core
lists: University of North Carolina Center for Gastrointestinal Biology and Disease
lists: University of North Carolina Center for Gastrointestinal Biology and Disease Advanced Analytics Core
lists: University of North Carolina Center for Gastrointestinal Biology and Disease Biostatistics and Data Management Core
lists: University of North Carolina Center for Gastrointestinal Biology and Disease Gnotobiotic Core
lists: University of North Carolina Center for Gastrointestinal Biology and Disease Histology Core
lists: University of North Carolina Center for Gastrointestinal Biology and Disease Large Animal Models Core
lists: University of North Carolina Center for Gastrointestinal Biology and Disease Microbiome Core
lists: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases
lists: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Molecular Pathology and Imaging Core
lists: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Host-Microbial Analytic and Repository Core
lists: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Genetically-Modified Mouse Core
lists: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Cell Culture Core
lists: Joslin Diabetes Center Molecular Phenotyping and Genotyping Core
lists: University of Pennsylvania Diabetes Research Center
lists: Preventing Early Renal Loss in Diabetes (PERL)
lists: Clinical Trials in Organ Transplantation in Children (CTOT-C)
lists: Clinical Trials in Organ Transplantation (CTOT)
lists: Stanford Diabetes Research Center
lists: Monogenic Diabetes Registry
lists: Chronic Prostatitis Collaborative Research Network Clinical Trial- Alfuzosin
lists: National Glycohemoglobin Standardization Program
lists: MetaCyto
lists: JOINSOLVER
lists: HASP
lists: NetCirChro
lists: Simmune
lists: ABC Bacterial Transporter Systems Database
lists: Kidney Precision Medicine Project
lists: ValIdated Systematic IntegratiON of epigenomic data
lists: The Human BioMolecular Atlas Program
lists: Prevention of Lower Urinary Tract Symptoms
lists: Illuminating the Druggable Genome
lists: 4D Nucleome
lists: immuneXpresso
lists: Multi-Disciplinary Approach to the Study of Chronic Pelvic Pain
lists: Secrepedia
lists: MoTrPAC Data Hub
lists: Human Cell Atlas
lists: PANC-DB
lists: Rare and Atypical Diabetes Network
lists: Diabetes Control and Complications Trial
lists: Diabetes Data and Hypothesis Hub
lists: Common Metabolic Diseases Knowledge Portal
lists: Type 1 Diabetes Knowledge Portal
lists: Sleep Disorder Knowledge Portal
lists: Cardiovascular Disease Knowledge Portal
lists: Cerebrovascular Disease Knowledge Portal
lists: Trans-Omics for Precision Medicine (TOPMed) Program
lists: All of Us
lists: AI-READI
is listed by: NIH Data Sharing Repositories
is listed by: NIDDK Research Resources
is listed by: Collaborating for the Advancement of Interdisciplinary Research in Benign Urology
is related to: MTOPS Prostate Samples Analysis Consortium
is related to: Neuroscience Information Framework
is related to: Diabetes Disease Portal
is related to: Kidney and Urinary Pathway Knowledge Base
is related to: dbMHC
is related to: Islet Cell Resource Centers
is related to: DGAP
is related to: Nuclear Receptor Resource
is related to: dkCOIN
is related to: Human Biological Data Interchange
is related to: National Gene Vector Biorepository
is related to: Creatinine Standardization Program
is related to: Glomerular Filtration Rate Calculators
is related to: Congressionally Directed Medical Research Program
is related to: National Kidney Disease Education Program
is related to: Network of Minority Health Research Investigators
is related to: National Endocrine and Metabolic Diseases Information Service
is related to: Kidney and Urinary Pathway Ontology
is related to: National Diabetes Information Clearinghouse
is related to: Digestive Diseases Statistics for the United States
is related to: Diabetes in America
is related to: National Digestive Diseases Information Clearinghouse
is related to: Diabetes Control and Complications Trial
is related to: National Hematologic Diseases Information Service
is related to: National Kidney and Urologic Diseases Information Clearinghouse
is related to: Nonhuman Primate Transplantation Tolerance Cooperative Study Group
is related to: Type 1 Diabetes Preclinical Testing Program
is related to: Diabetes Autoantibody Standardization Program
is related to: AASK Clinical Trial and Cohort Study
is related to: Maryland Genetics of Interstitial Cystitis
is related to: Frequent Hemodialysis Network Nocturnal Trial
is related to: Mammalian Gene Collection
is related to: Zebrafish Gene Collection
is related to: Boston Area Community Health Survey
is related to: Minimally Invasive Surgical Therapies Treatment Consortium for Benign Prostatic Hyperplasia
is related to: Focal Segmental Glomerulosclerosis in Children and Young Adults Interventional Study
is related to: Complementary and Alternative Medicine for Urological Symptoms
is related to: Mouse Mutagenesis Center for Developmental Defects
is related to: CARDS Database
is related to: ACCORD
is related to: Program to Reduce Incontinence by Diet and Exercise
is related to: Renal Disease Portal
is related to: Renin Angiotensin System Study
is related to: NIH Data Sharing Repositories
is related to: Kidney Development Database
is related to: GenePaint Interactive Anatomy Atlas
is related to: EMAGE Gene Expression Database
is related to: Gene Expression Omnibus
is related to: MGnify
is related to: FAIR Data Informatics Laboratory
is related to: Type 1 Diabetes Knowledge Portal
is related to: Polycystic Kidney Disease Research Resource Consortium
has parent organization: SciCrunch
has parent organization: University of California at San Diego; California; USA
|
Digestive disease, Kidney disease, Diabetes, Metabolic disease, Endocrine disease, Obesity, Urologic disease, Type 1 diabetes, Type 2 diabetes |
NIDDK U24 DK097771 |
PMID:26393351 |
Free, Freely available |
|
nlx_153866, r3d100012845 |
http://scicrunch.org/dknet, https://doi.org/10.17616/R31NJMEL |
|
|
SCR_001606 |
National Institute of Diabetes and Digestive and Kidney Disease Information Network, NIDDK Information Network, DKnet, NIDDKInformation Network |
2026-09-12 12:55:28 |
21 |
DNA DataBank of Japan (DDBJ)
Resource Report
Resource Website
500+ mentions
|
DNA DataBank of Japan (DDBJ) (RRID:SCR_002359)
|
DDBJ
|
data or information resource, data repository, database, service resource, storage service resource
|
Maintains and provides archival, retrieval and analytical resources for biological information. Central DDBJ resource consists of public, open-access nucleotide sequence databases including raw sequence reads, assembly information and functional annotation. Database content is exchanged with EBI and NCBI within the framework of the International Nucleotide Sequence Database Collaboration (INSDC). In 2011, DDBJ launched two new resources: DDBJ Omics Archive and BioProject. DOR is archival database of functional genomics data generated by microarray and highly parallel new generation sequencers. Data are exchanged between the ArrayExpress at EBI and DOR in the common MAGE-TAB format. BioProject provides organizational framework to access metadata about research projects and data from projects that are deposited into different databases.
|
nucleotide sequence, genome, dna, dna database, dna research, nucleotide, phylogenetics, protein, sequence, protein binding, gene expression, gene, genetics, nucleoid, genomics, protein binding, gold standard, bio.tools, FASEB list
|
is recommended by: NIDDK Information Network (dkNET)
is recommended by: National Library of Medicine
is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
is listed by: OMICtools
is listed by: re3data.org
is listed by: Debian
is listed by: bio.tools
is related to: INSDC
is related to: GenBank
is related to: INSDC
is related to: European Nucleotide Archive (ENA)
is related to: GenBank
is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
is related to: Worldwide Protein Data Bank (wwPDB)
is related to: Biological Magnetic Resonance Data Bank (BMRB)
is related to: PDBe - Protein Data Bank in Europe
is related to: PDBe - Protein Data Bank in Europe
is related to: European Nucleotide Archive (ENA)
is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
is related to: NCBI Assembly Archive Viewer
has parent organization: National Institute of Genetics; Shizuoka; Japan
is parent organization of: DDBJ Omics Archive
is parent organization of: BodyMap-Xs
is parent organization of: DDBJ Sequence Read Archive
is parent organization of: CIBEX: Center for Information Biology gene EXpression database
is parent organization of: Japanese Genotype-phenotype Archive (JGA)
|
|
Japanese Ministry of Education Culture Sports Science and Technology MEXT |
PMID:26578571
PMID:25477381 |
Free, Freely available, |
|
OMICS_01644, biotools:ddbj, nif-0000-02740, r3d100010218 |
https://bio.tools/ddbj, https://doi.org/10.17616/R3M01R |
|
|
SCR_002359 |
DNA DataBank of Japan (DDBJ), DNA DataBank of Japan, DDBJ, DNA Data Bank of Japan, DDBJ - DNA Data Bank of Japan |
2026-09-12 12:55:40 |
709 |
Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
Resource Report
Resource Website
10000+ mentions
|
Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) (RRID:SCR_012820)
|
RCSB PDB
|
data or information resource, data repository, database, service resource, storage service resource
|
Collection of structural data of biological macromolecules. Database of information about 3D structures of large biological molecules, including proteins and nucleic acids. Users can perform queries on data and analyze and visualize results.
|
3-dimensional, annotation, molecule, nucleic acid, protein, visualization, sequence, function, macromolecule, ligand, model, dna, x-ray crystallography, ribosome, structure, oncogene, nucleic acids, molecular structure, cryomicroscopy, gold standard, FASEB list
|
is used by: Structural Genomics Consortium
is used by: Ligand Expo
is used by: DARC - Database for Aligned Ribosomal Complexes
is used by: FireDB
is used by: Protein Data Bank Bind Database
is used by: Protein Data Bank Site
is used by: NIF Data Federation
is used by: ChannelPedia
is used by: MobiDB
is used by: BALBES
is used by: Structural Antibody Database
is used by: BioLiP
is recommended by: NIDDK Information Network (dkNET)
is recommended by: National Library of Medicine
is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
is listed by: re3data.org
is affiliated with: EMDataResource.org
is affiliated with: ConSurf Database
is related to: pdb-data
is related to: PDB2MultiGif
is related to: GlyProt
is related to: pdb-care
is related to: pdb2linucs
is related to: GlyVicinity
is related to: GlyTorsion
is related to: GlySeq
is related to: AffinDB
is related to: StatAlign
is related to: Community Structure-Activity Resource
is related to: Binding MOAD
is related to: ConSurf Database
is related to: glycosciences.de
is related to: DOMINE: Database of Protein Interactions
is related to: Jenalib: Jena Library of Biological Macromolecules
is related to: SynSysNet
is related to: EMDataResource.org
is related to: PDBe - Protein Data Bank in Europe
is related to: TFinDIT
is related to: HOLLOW
is related to: ccPDB - Compilation and Creation of datasets from PDB
is related to: DOMMINO - Database Of MacroMolecular INteractiOns
is related to: InterEvol database
is related to: Polbase
is related to: PoSSuM
is related to: ProtChemSI
is related to: RNA CoSSMos
is related to: PDBsum
is related to: Worldwide Protein Data Bank (wwPDB)
is related to: canSAR
is related to: CAPS Database
is related to: Dockground: Benchmarks, Docoys, Templates, and other knowledge resources for DOCKING
is related to: Combinatorial Extension (CE)
is related to: Metalloprotein Site Database
is related to: PDBj - Protein Data Bank Japan
is related to: Statistical Torsional Angles Potentials of NMR Refinement Database
is related to: Metalloprotein Ligand Interaction Database
is related to: CARP
is related to: PDBTM
is related to: RNA FRABASE - RNA FRAgments search engine and dataBASE
is related to: AmiGO
is related to: ConsensusPathDB
is related to: Biological Magnetic Resonance Data Bank (BMRB)
is related to: DNA DataBank of Japan (DDBJ)
is related to: FlyMine
is related to: NCBI Protein Database
is related to: NCBI Nucleotide
is related to: FunTree
is related to: IndelFR - Indel Flanking Region Database
is related to: NMR Restraints Grid
is related to: Enzyme Structures Database
is related to: Electron Microscopy Data Bank at PDBe (MSD-EBI)
is related to: Worldwide Protein Data Bank (wwPDB)
is related to: DNA DataBank of Japan (DDBJ)
is related to: PDBe - Protein Data Bank in Europe
is related to: MINAS - Metal Ions in Nucleic AcidS
is related to: PDBj - Protein Data Bank Japan
has parent organization: University of California at San Diego; California; USA
has parent organization: Rutgers University; New Jersey; USA
is parent organization of: RCSB PDB Software Tools
is parent organization of: Protein Data Bank Markup Language
is parent organization of: Ligand Expo
works with: CellPhoneDB
|
|
DOE ;
NIH ;
NSF DBI-1338415 |
PMID:12037327 |
Public, Acknowledgement requested |
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nif-0000-00135, SCR_017379, r3d100010327 |
http://www.rcsb.org, http://www.pdb.org, |
http://www.rcsb.org/pdb/ |
|
SCR_012820 |
RCSB, Research Collaboratory for Structural Bioinformatics Protein Data Bank, The Protein Data Bank, PDB, Protein Databank, RCSB Protein Data Bank, Protein Data Bank |
2026-09-12 12:57:53 |
12459 |
NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
Resource Report
Resource Website
100+ mentions
|
NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases (RRID:SCR_012895)
|
NIDDK
|
government granting agency
|
Center with mission to conduct and support medical research and research training and to disseminate science-based information on diabetes and other endocrine and metabolic diseases. The NIDDK supports a wide range of medical research through grants to universities and other medical research institutions across the country.
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diabetes, metabolic disease, digestive, kidney, endocrine, medical research
|
recommends: Cell Image Library (CIL)
recommends: Biological General Repository for Interaction Datasets (BioGRID)
recommends: NIDDK Central Repository
recommends: Accelerating Medicines Partnership Type 2 Diabetes Knowledge Portal (AMP-T2D)
recommends: Metabolomics Workbench
recommends: PeptideAtlas
recommends: Network Data Exchange (NDEx)
recommends: Mouse Genome Informatics (MGI)
recommends: Zebrafish Information Network (ZFIN)
recommends: FlyBase
recommends: Database of Interacting Proteins (DIP)
recommends: WormBase
recommends: PhysioNet
recommends: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
recommends: UniProt
recommends: dbSNP
recommends: DNA DataBank of Japan (DDBJ)
recommends: European Nucleotide Archive (ENA)
recommends: dbVar
recommends: ClinicalTrials.gov
recommends: European Variation Archive (EVA)
recommends: MGnify
recommends: Analysis, Visualization, and Informatics Lab-space (AnVIL)
recommends: GenBank
recommends: Gene Expression Omnibus (GEO)
recommends: miRBase
recommends: Database of Genomic Variants Archive (DGVa)
recommends: Crystallography Open Database (COD)
recommends: Coherent X-Ray Imaging Data Bank (CXIDB)
recommends: Biological Magnetic Resonance Data Bank (BMRB)
recommends: Worldwide Protein Data Bank (wwPDB)
recommends: EMDataResource.org
recommends: NCBI Assembly Archive Viewer
recommends: Cambridge Crystallographic Data Centre (CCDC)
recommends: Inorganic Crystal Structure Database (ICSD)
recommends: Structural Biology Grid
recommends: ArrayExpress
recommends: GenomeRNAi
recommends: NCBI database of Genotypes and Phenotypes (dbGap)
recommends: Protein Circular Dichroism Data Bank (PCDDB)
recommends: Electron Microscopy Data Bank at PDBe (MSD-EBI)
recommends: PDBe - Protein Data Bank in Europe
recommends: PubChem BioAssay
recommends: Japanese Genotype-phenotype Archive (JGA)
recommends: ProteomeXchange
recommends: IntAct
recommends: European Genome phenome Archive
recommends: MetaboLights
recommends: PubChem Substance
recommends: The Immunology Database and Analysis Portal (ImmPort)
recommends: STRENDA
recommends: Kinetic Models of Biological Systems (KiMoSys)
recommends: FLOWRepository
recommends: Mass spectrometry Interactive Virtual Environment (MassIVE)
recommends: Global Proteome Machine Database (GPM DB)
recommends: Cancer Imaging Archive (TCIA)
recommends: German Neuroinformatics Node (G-Node)
recommends: 1000 Functional Connectomes Project
recommends: ChEMBL
recommends: Image Data Resource (IDR)
recommends: SICAS Medical Image Repository
recommends: ZENODO
recommends: Dataverse Network Project
recommends: NeuroMorpho.Org
recommends: Mendeley Data
recommends: NIMH Data Archive
recommends: NIH Figshare Archive
recommends: FigShare
recommends: National Addiction and HIV Data Archive Program (NAHDAP)
recommends: Dryad Digital Repository
recommends: Open Science Framework
recommends: OpenNeuro
recommends: SPARC Portal
lists: Mutant Mouse Resource and Research Center
lists: NIDDK Research Resources
is affiliated with: Cystic Fibrosis Research and Translation Centers
is affiliated with: Nutrition and Obesity Research Centers
is affiliated with: O'Brien Urology Centers
is affiliated with: Hematology Centers
is affiliated with: Polycystic Kidney Disease Research and Translation Centers
is affiliated with: O'Brien Kidney Centers
is affiliated with: Diabetes Research Centers
is affiliated with: Digestive Disease Centers
is affiliated with: Centers for Diabetes Translation Research
is affiliated with: Pediatric Centers of Excellence in Nephrology
is affiliated with: Focal Segmental Glomerulosclerosis in Children and Young Adults Interventional Study
is related to: Bridging Interventional Development Gaps
is related to: Polycystic Kidney Disease Research Resource Consortium
has parent organization: National Institutes of Health
is parent organization of: MTOPS Prostate Samples Analysis Consortium
is parent organization of: Symptom Score for Benign Prostatic Hyperplasia
is parent organization of: Type 1 Diabetes - Rapid Access to Intervention Development
is parent organization of: National Diabetes Education Program
is parent organization of: Family Investigation of Nephropathy of Diabetes
is parent organization of: Frequent Hemodialysis Network Daily Trial
is parent organization of: HemBase
is parent organization of: NIDDK- National Institute of Diabetes and Digestive and Kidney Diseases Obesity Resources
is parent organization of: dkCOIN
is parent organization of: National Kidney Disease Education Program
is parent organization of: Network of Minority Health Research Investigators
is parent organization of: National Endocrine and Metabolic Diseases Information Service
is parent organization of: National Diabetes Information Clearinghouse
is parent organization of: National Digestive Diseases Information Clearinghouse
is parent organization of: National Hematologic Diseases Information Service
is parent organization of: National Kidney and Urologic Diseases Information Clearinghouse
is parent organization of: Type 1 Diabetes Preclinical Testing Program
is parent organization of: Frequent Hemodialysis Network Nocturnal Trial
is parent organization of: Boston Area Community Health Survey
is parent organization of: Minimally Invasive Surgical Therapies Treatment Consortium for Benign Prostatic Hyperplasia
is parent organization of: Focal Segmental Glomerulosclerosis in Children and Young Adults Interventional Study
|
Type 1 diabetes, Type 2 diabetes, Diabetes, Digestive disease, Kidney disease, Endocrine disease, Obesity, Blood disease, Liver disease, Urologic disease |
|
|
|
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nlx_inv_1005102 |
|
|
|
SCR_012895 |
National Institute of Diabetes and Digestive and Kidney Diseases |
2026-09-12 12:57:55 |
156 |
PDBj - Protein Data Bank Japan
Resource Report
Resource Website
10+ mentions
|
PDBj - Protein Data Bank Japan (RRID:SCR_008912)
|
PDBj
|
data or information resource, data repository, database, service resource, storage service resource
|
PDBj (Protein Data Bank Japan) maintains a centralized PDB archive of macromolecular structures and provides integrated tools, in collaboration with the RCSB, the BMRB in USA and the PDBe in EU.
|
protein, macromolecule, structure, sequence, ligand, binding site, nmr, molecule, gold standard
|
is recommended by: NIDDK Information Network (dkNET)
is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
is related to: Worldwide Protein Data Bank (wwPDB)
is related to: PDBe - Protein Data Bank in Europe
is related to: Biological Magnetic Resonance Data Bank (BMRB)
is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
has parent organization: Osaka University; Osaka; Japan
|
|
Japan Science and Technology Agency ;
NBDC - National Bioscience Database Center |
|
PDB data, Text and images are free of all copyright restrictions. You can use them free of charge. When you reprint or cite them, Please also cite us as follows: Protein Data Bank Japan (PDBj) Please also see Terms of Use page. |
|
nlx_151484, r3d100010910 |
https://doi.org/10.17616/R3RP75, https://doi.org/10.17616/R3RP75 |
|
|
SCR_008912 |
PDBj, Protein Data Bank Japan |
2026-09-12 12:57:10 |
46 |
CCPN Data Model
Resource Report
Resource Website
|
CCPN Data Model (RRID:SCR_016982)
|
|
data or information resource, data processing software, data repository, data storage software, database, service resource, software application, software resource, storage service resource
|
Model to cover data for macromolecular NMR spectroscopy from the initial experimental data to the final validation. Used for the large scale data deposition, data mining and program interoperability. Enables movement from one software package to another without difficulties with data conversion or loss of information. Works with CcpNmr Analysis software for analysis and interactive display, CcpNmr FormatConverter for allowing transfer of data from programs used in NMR to and from the Data Model, and the CLOUDS software for automated structure calculation and assignment. Used within the CCPN software suite for NMR spectroscopy and at the BioMagResBank for converting existing deposited restraint lists to a standard IUPAC nomenclature.
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data, macromolecular, NMR, spectroscopy, deposition, mining, interoperability, conversion
|
is related to: Biological Magnetic Resonance Data Bank (BMRB)
has parent organization: Collaborative Computing Project for NMR
works with: CCPN Analysis
works with: CCPN Analysis
|
|
BBSRC ;
EU ;
NIGMS GM67965;
NLM P41 LM005799 |
PMID:15815974
PMID:15613391
PMID:21953355 |
Free, Public |
|
|
|
|
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SCR_016982 |
The CCPN Data Model |
2026-09-12 12:58:46 |
0 |
NRG-CING
Resource Report
Resource Website
1+ mentions
|
NRG-CING (RRID:SCR_006079)
|
NRG-CING
|
data or information resource, database
|
NRG-CING presents a complete validation report for all 9,000+ wwPDB NMR entries including remediated experimental data such as chemical shifts from BMRB and restraints from NRG . These CING reports are compiled from internal analyses and those by CCPN, DSSP, PROCHECK-NMR/Aqua, ShiftX, Talos+, Vasco, Wattos, and WHAT_CHECK. The NRG-CING website is a collection of CING reports that has been pre-calculated for all PDB files solved by NMR. (See website for more information on CING.) In case the underlying experimental data is available, these have been cleaned up and made syntactically and semantically correct and homogeneous. For many macromolecular NMR ensembles from the Protein Data Bank (PDB) the experiment-based restraint lists used in the structure calculation are accessible, while other experimental data, mainly chemical shift values, are often available from the BioMagResBank. Assessment of the quality of the structural result is paramount to their usage and a combined, integrated repository of both input data and structural results greatly facilitates such an analysis. In addition, the accuracy and precision of the coordinates in these macromolecular NMR ensembles can be improved by recalculations using the available experimental data and present-day software with improved protocols and force fields. Such efforts, however, generally fail on over half of all deposited structures due to the syntactic and semantic heterogeneity of the data and the wide variety of formats used for their deposition. We have combined the cleaned-up restraints information from the NMR Restraints Grid (NRG) database with available chemical shifts from the BioMagResBank in the weekly updated NRG-CING database. Eleven programs, in addition to CING itself, have been included in the NRG-CING production pipeline to arrive at validation reports that list for each entry the potential inconsistencies between the coordinates and the available restraint and chemical shift data. The longitudinal validation of this data yielded a set of indicators that can be used to judge the quality of every macromolecular structure solved with NMR. The cleaned up NMR experimental datasets and the validation reports are freely available.
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macromolecular structure, nmr, macromolecule, restraint, chemical shift, validation report, validation, bio.tools
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is listed by: Debian
is listed by: bio.tools
is related to: Worldwide Protein Data Bank (wwPDB)
is related to: NMR Restraints Grid
is related to: Biological Magnetic Resonance Data Bank (BMRB)
has parent organization: Radboud University; Nijmegen; The Netherlands
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Netherlands Organization for Scientific Research (NWO) 700.55.443;
Netherlands Bioinformatics Centre (NBIC) ;
EU FP6 LSHG-CT-2005-018988;
EU FP6 LHSG-CT-2004-512092;
EU FP7 261572;
Brussels Institute for Research and Innovation BB2B 2010-1-12;
NLM LM05799 |
PMID:22139937 |
Free |
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nlx_151486, biotools:nrg-cing |
https://bio.tools/nrg-cing |
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SCR_006079 |
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2026-09-12 01:01:40 |
1 |
Worldwide Protein Data Bank (wwPDB)
Resource Report
Resource Website
1000+ mentions
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Worldwide Protein Data Bank (wwPDB) (RRID:SCR_006555)
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wwPDB
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data or information resource, database
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Public global Protein Data Bank archive of macromolecular structural data overseen by organizations that act as deposition, data processing and distribution centers for PDB data. Members are: RCSB PDB (USA), PDBe (Europe) and PDBj (Japan), and BMRB (USA). This site provides information about services provided by individual member organizations and about projects undertaken by wwPDB. Data available via websites of its member organizations.
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3-dimentional, bioinformatics, protein, research, structure, macromolecule, structural data, 3d spatial image, gold standard
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is used by: Ligand Expo
is recommended by: NIDDK Information Network (dkNET)
is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
is related to: Biological Magnetic Resonance Data Bank (BMRB)
is related to: Proteopedia - Life in 3D
is related to: NRG-CING
is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
is related to: DNA DataBank of Japan (DDBJ)
is related to: PDBe - Protein Data Bank in Europe
is related to: PDBe - Protein Data Bank in Europe
is related to: PDBj - Protein Data Bank Japan
is related to: Biological Magnetic Resonance Data Bank (BMRB)
is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
is related to: PDB Validation Server
is related to: Structural Antibody Database
is parent organization of: PDB-Dev
works with: PDB-REDO
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BBSRC ;
DOE ;
European Molecular Biology Laboratory ;
European Union ;
Heidelberg; Germany ;
Japan Science and Technology Agency ;
NBDC - National Bioscience Database Center ;
NCI ;
NIDDK ;
NIGMS ;
NIH ;
NINDS ;
NLM ;
NSF ;
Wellcome Trust |
PMID:14634627 |
Free, Freely available |
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nif-0000-23903, r3d100011104 |
https://doi.org/10.17616/R3462V |
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SCR_006555 |
World Wide Protein DataBank, wwPDB, Worldwide Protein Data Bank (wwPDB), World Wide Protein Data Bank, Worldwide Protein DataBank |
2026-09-12 01:01:43 |
1340 |
re3data.org
Resource Report
Resource Website
50+ mentions
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re3data.org (RRID:SCR_006782)
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re3data.org
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data or information resource, database, registry
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Global registry of research data repositories from all academic disciplines that allows the easy identification of appropriate research data repositories, both for data producers and users. Information icons display principal attributes of a repository that can be used for multi-faceted searches. Repository operators can suggest their infrastructures to be listed via a simple application form. A repository is indexed when the minimum requirements are met, i.e. mode of access to the data and repository, as well as the terms of use.
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vocabulary, registry, metadata standard, data sharing, FASEB list
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lists: Academic Seismic Portal at UTIG
lists: National Addiction and HIV Data Archive Program (NAHDAP)
lists: Alaska Climate Research Center
lists: MINT
lists: Internet Archive
lists: MatrixDB
lists: Animal QTLdb
lists: MPIDB
lists: BeetleBase
lists: Conserved Domain Database
lists: NeuroMorpho.Org
lists: Marine Geoscience Data System
lists: Cell Centered Database
lists: dbMHC
lists: Human Mortality Database
lists: UniProt
lists: Ligand-Gated Ion Channel Database
lists: EcoGene
lists: NCBI Genome
lists: ESTHER
lists: Genomes Online Database
lists: Gramene
lists: American FactFinder
lists: Human Proteinpedia
lists: IMGT/HLA
lists: Influenza Virus Resource
lists: DOE Joint Genome Institute
lists: MetaCrop
lists: ISPS Data Archive
lists: MorphBank
lists: miRBase
lists: Inter-university Consortium for Political and Social Research (ICPSR)
lists: Mouse Phenome Database (MPD)
lists: MorphoBank
lists: dbVar
lists: Open Science Framework
lists: TalkBank
lists: Nucleic Acid Database
lists: NCBI Taxonomy
lists: NCBI Protein Database
lists: PHI-base
lists: Alberta Geological Survey
lists: Protein Clusters
lists: Reactome
lists: Cell Image Library (CIL)
lists: eyeMoviePedia
lists: ALLBUS - German General Social Survey
lists: TPA
lists: Agency for Healthcare Research and Quality
lists: Alaska Satellite Facility
lists: Current German Weather Stations
lists: NCBI Structure
lists: BOLD
lists: PDBe - Protein Data Bank in Europe
lists: FishBase
lists: Nucleotide database
lists: NCBI BioSystems Database
lists: SGD
lists: Data.gov
lists: RHEA
lists: European Bioinformatics Institute
lists: NCBI Probe
lists: NCBI Nucleotide
lists: Database of Genomic Variants Archive (DGVa)
lists: NCBI Popset
lists: Whole Brain Atlas
lists: EMAGE Gene Expression Database
lists: Limited Access Datasets From NIMH Clinical Trials
lists: Tree of Life Web Project
lists: TreeBASE
lists: UCSC Genome Browser
lists: UniPROBE
lists: Crystallography Open Database (COD)
lists: National Archive of Computerized Data on Aging (NACDA)
lists: EOL - Encyclopedia of Life
lists: VectorBase
lists: caArray
lists: NCBI Epigenomics
lists: GWAS Central
lists: QTL Archive
lists: Proteome Commons
lists: XNAT Central
lists: 4TU.Datacentrum
lists: Amazon Web Services Public Data Sets
lists: ChemSpider
lists: DataStaR
lists: Rat Genome Database (RGD)
lists: Atlas of Living Australia
lists: Electron Microscopy Data Bank at PDBe (MSD-EBI)
lists: Phytozome
lists: FlyBase
lists: MaizeGDB
lists: Tuberculosis Database
lists: InterPro
lists: UNAVCO
lists: The Human Protein Atlas
lists: InnateDB
lists: UniSTS
lists: Launchpad
lists: Surveillance Epidemiology and End Results
lists: FAOSTAT
lists: Adult Blood Lead Epidemiology and Surveillance Interactive Database
lists: HIstome: The Histone Infobase
lists: HPRD - Human Protein Reference Database
lists: Biological General Repository for Interaction Datasets (BioGRID)
lists: INFEVERS
lists: Reciprocal Net
lists: Africa Centre for Health and Population Studies
lists: BeeBase
lists: Biodiversity Heritage Library
lists: Databrary
lists: ACADIS Gateway
lists: ACEpepDB
lists: AIMS Data Centre
lists: ALADDIN
lists: ASTER
lists: Access to Archival Databases
lists: AidData
lists: Alaska Ocean Observing System
lists: J. Craig Venter Institute
lists: Wellcome Trust Sanger Institute; Hinxton; United Kingdom
lists: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
lists: myExperiment
lists: BioModels
lists: Addgene
lists: Antarctic and Southern Ocean Data Portal
lists: OpenTopography
lists: National Snow and Ice Data Center
lists: Biological Magnetic Resonance Data Bank (BMRB)
lists: dbSNP
lists: Ensembl
lists: DNA DataBank of Japan (DDBJ)
lists: Entrez Gene
lists: Zebrafish Information Network (ZFIN)
lists: GitHub
lists: DrugBank
lists: NCBI database of Genotypes and Phenotypes (dbGap)
lists: Gene Expression Nervous System Atlas
lists: SumsDB
lists: GenBank
lists: GermOnline
lists: HGNC
lists: Greengenes
lists: Neuroscience Information Framework
lists: HomoloGene
lists: ArrayExpress
lists: JASPAR
lists: WormBase
lists: Database of Interacting Proteins (DIP)
lists: EMDataResource.org
lists: ResearchCompendia
lists: Proteomics Identifications (PRIDE)
lists: RefSeq
lists: FAIRsharing
lists: PubChem
lists: FigShare
lists: UniGene
lists: NIMH Data Archive
lists: TAIR
lists: NCBI BioProject
lists: SMD
lists: OpenNeuro
lists: SoyBase
lists: Beta Cell Biology Consortium
lists: Biomedical Informatics Research Network
lists: Dryad Digital Repository
lists: Atlantic Canada Conservation Data Centre
lists: Agri-environmental Research Data Repository
lists: Australian Antarctic Data Centre
lists: Antibody Registry
lists: Mouse Genome Informatics (MGI)
lists: European Nucleotide Archive (ENA)
lists: NIDDK Central Repository
lists: GigaScience
lists: PeptideAtlas
lists: 1000 Genomes: A Deep Catalog of Human Genetic Variation
lists: IntAct
lists: fMRI Data Center
lists: Gene Expression Omnibus
lists: Data and Specimen Hub (NICHD DASH)
lists: NIDA Data Share
lists: The NINDS Human Cell and Data Repository (NHCDR)
lists: Microphysiology Systems Database
lists: Dataverse Network Project
lists: Mendeley
lists: Vivli
lists: Metabolomics Workbench
lists: Qualitative Data Repository
lists: Protocols.io
lists: ZENODO
lists: STRENDA
lists: Code Ocean
lists: Brain Image Library
lists: German Collection of Microorganisms and Cell Cultures
lists: INPTDAT
lists: DataONE
lists: GBIF - Global Biodiversity Information Facility
lists: Lamont-Doherty Core Repository
lists: CaltechDATA
lists: Synapse
lists: Incorporated Research Institutions for Seismology
lists: Cancer Imaging Archive (TCIA)
lists: Mendeley Data
lists: UK Data Archive
lists: GigaDB
lists: PhysioNet
lists: Project Data Sphere
lists: Influenza Research Database (IRD)
lists: Simtk.org
lists: ResearchGate
lists: Virus Pathogen Resource (ViPR)
lists: Cambridge Structural Data Base
lists: 4TU.ResearchData
lists: Aperta Turkey Open Archive
lists: Polar Data Catalogue
lists: Arch
lists: Australian Data Archive
lists: Australian Ocean Data Network
lists: Barbara A. Mikulski Archive for Space Telescopes
lists: Aston Data Explorer
lists: Birkbeck Research Data
lists: B2SHARE Eudat
lists: BioHeritage National Science Challenge Data Repository
lists: Bolin Centre Database
lists: Brown Digital Repository
is listed by: FORCE11
is related to: U.S. Census Bureau
is related to: Rat Genome Database (RGD)
is related to: ResearchCompendia
has parent organization: Humboldt University of Berlin; Berlin; Germany
has parent organization: Karlsruhe Institute of Technology; Karlsruhe; Germany
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DFG |
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The community can contribute to this resource |
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nlx_152589 |
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SCR_006782 |
Registry of Research Data Repositories, re3data.org: Registry of Research Data Repositories, re3data |
2026-09-12 01:01:44 |
89 |
Nucleic Acid Database
Resource Report
Resource Website
10+ mentions
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Nucleic Acid Database (RRID:SCR_003255)
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NDB
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data or information resource, database
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A database of three-dimensional structural information about nucleic acids and their complexes. In addition to primary data, it contains derived geometric data, classifications of structures and motifs, standards for describing nucleic acid features, as well as tools and software for the analysis of nucleic acids. A variety of search capabilities are available, as are many different types of reports. NDB maintains the macromolecular Crystallographic Information File (mmCIF).
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nucleic acid, dna, nucleopeptide, nucleoprotein, nucleotide, rna, transfection, sequence, structure, function, bio.tools, FASEB list
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is listed by: re3data.org
is listed by: bio.tools
is listed by: Debian
is related to: MINAS - Metal Ions in Nucleic AcidS
is related to: Biological Magnetic Resonance Data Bank (BMRB)
is related to: Jenalib: Jena Library of Biological Macromolecules
has parent organization: Rutgers University; New Jersey; USA
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NSF ;
DOE ;
NIH |
PMID:24185695
PMID:1384741 |
Free, Available for download, Freely available |
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nif-0000-03184, biotools:ndb, r3d100010415 |
https://bio.tools/ndb, https://doi.org/10.17616/R3531R |
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SCR_003255 |
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2026-09-12 01:01:28 |
37 |
