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URL: http://bioinformatics.biol.uoa.gr/TMRPres2D/
Proper Citation: TMRPres2D (RRID:SCR_007382)
Description: Software that automates the creation of uniform, two-dimensional, high analysis graphical images/models of alpha-helical or beta-barrel transmembrane proteins. Protein sequence data and structural information may be acquired from public protein knowledge bases, emanate from prediction algorithms, or even be defined by the user. Several important biological and physical sequence attributes can be embedded in the graphical representation. The application has been written using the platform independent Java language by Sun Microsystems. The implementation is likely to encapsulate the Applet and JavaBean technology. Consequently, the tool, apart from standalone application, may be used as an applet or even embedded in a web-server. Thus, it can serve to exhibit transmembrane protein schematic models in web pages. Requirements for the stand-alone application: Java Runtime Environment 1.4.x The source code is available to any interested party, upon request from the authors.
Abbreviations: TMRPress2D
Synonyms: TransMembrane protein Re-Presentation in 2 Dimensions tool, TMRPres2D: High quality visual representation of transmembrane protein models
Resource Type: source code, software resource
Defining Citation: PMID:15201184
Keywords: two-dimensional, graphic, image, model, alpha-helical, beta-barrel, transmembrane protein, protein sequence, graphical representation, visualization software, data visualization software
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University of Athens Biophysics and Bioinformatics Laboratory |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant 2U24DK097771-09.
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