GenitoUrinary Development Molecular Anatomy Project
Resource Report
Resource Website
100+ mentions
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GenitoUrinary Development Molecular Anatomy Project (RRID:SCR_001554)
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GUDMAP
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biomaterial supply resource, material resource, organism supplier
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Project aggregates and provides experimental gene expression data from genito-urinary system. International consortium providing molecular atlas of gene expression for developing organs of GenitoUrinary (GU) tract. Mouse strains to facilitate developmental and functional studies within GU system. Experimental protocols and standard specifications. Tutorials describing GU organogenesis and primary data via database. Data are from large-scale in situ hybridization screens (wholemount and section) and microarray gene expression data of microdissected, laser-captured and FACS-sorted components of developing mouse genitourinary (GU) system.
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gene expression, genitourinary tract, molecular anatomy, genitourinary system, organogenesis, genitourinary, in situ hybridization, immunohistochemistry, microarray, mutant mouse strain, development, rna, protein, theiler stage, gene, anatomy, male, female, embryonic mouse, kidney, urogenital tract, urinary, reproductive, disease, molecule, cell, gene, phenotype, functional annotation, protein interaction, transgenic transgene, image, rna extraction, sample preparation, fluorescent immunohistochemistry, rna isolation, rna amplification, labeling, fluorescent in situ-hybridization, riboprobe synthesis, cellular localization, tissue isolation, embedding, cryostat sectioning, laser capture microdissection, paraffin, whole mount, optimal cutting temperature, riboprobe synthesis, target amplification, sectioning, FASEB list
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is used by: NIDDK Information Network (dkNET) is listed by: One Mind Biospecimen Bank Listing is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Research Resources is listed by: Collaborating for the Advancement of Interdisciplinary Research in Benign Urology is related to: ToppCluster is related to: One Mind Biospecimen Bank Listing is parent organization of: GUDMAP Ontology is parent organization of: GATACA GUDMAP Gene Explorer
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NIDDK DK070136; NIDDK DK070181; NIDDK DK070200 |
PMID:21652655 PMID:18287559 |
THIS RESOURCE IS NO LONGER IN SERVICE |
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nlx_152871, nif-0000-33426 |
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SCR_001554 |
Murine Atlas for Genitourinary Development |
2026-08-29 11:20:56 |
289 |
GUDMAP Ontology
Resource Report
Resource Website
1+ mentions
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GUDMAP Ontology (RRID:SCR_002637)
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GUDMAP Ontology
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controlled vocabulary, data or information resource, ontology, resource
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THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 14,2026. A high-resolution ontology has been developed by members of the GUDMAP consortium to describe the subcompartments of the developing murine genitourinary tract. This ontology incorporates what can be defined histologically and begins to encompass other structures and cell types already identified at the molecular level. The GUDMAP ontology encompasses Theiler stage (TS) 17-27 of development as well as the sexually mature adult. It has been written as a partonomic, text-based, hierarchical ontology that, for the embryological stages, has been developed as a high-resolution expansion of the existing Edinburgh Mouse Atlas Project (EMAP) ontology. It also includes group terms for well-characterized structural and/or functional units comprising several sub-structures, such as the nephron and juxtaglomerular complex. Each term has been assigned a unique identification number. Synonyms have been used to improve the success of query searching and maintain wherever possible existing EMAP terms relating to this organ system.
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murine, genitourinary tract, development, in situ hybridization, theiler stage, adult mouse, newborn mouse, adolescent mouse, embryonic mouse
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is used by: GATACA GUDMAP Gene Explorer is used by: Kidney Development Database lists: GOA lists: EuReGene lists: Embryo Images Normal and Abnormal Mammalian Development lists: Stem Cell Genome Anatomy Projects lists: Eurexpress lists: Gene Expression Database lists: ToppGene Suite is related to: eMouseAtlas is related to: GenePaint Interactive Anatomy Atlas is related to: EMAGE Gene Expression Database is related to: Gene Expression Omnibus has parent organization: GenitoUrinary Development Molecular Anatomy Project
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NIDDK DK070136-02; NIDDK DK070181; NIDDK DK07020001; European Union FP6 005085 |
PMID:17452023 |
THIS RESOURCE IS NO LONGER IN SERVICE |
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nlx_156063 |
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SCR_002637 |
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2026-08-29 11:21:26 |
2 |
ToppCluster
Resource Report
Resource Website
100+ mentions
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ToppCluster (RRID:SCR_001503)
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ToppCluster
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analysis service resource, data analysis service, production service resource, resource, service resource
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A tool for performing multi-cluster gene functional enrichment analyses on large scale data (microarray experiments with many time-points, cell-types, tissue-types, etc.). It facilitates co-analysis of multiple gene lists and yields as output a rich functional map showing the shared and list-specific functional features. The output can be visualized in tabular, heatmap or network formats using built-in options as well as third-party software. It uses the hypergeometric test to obtain functional enrichment achieved via the gene list enrichment analysis option available in ToppGene.
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term enrichment, gene, analysis, gene enrichment analysis, connectivity, heatmap, ortholog, microarray, function, bio.tools
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is listed by: OMICtools is listed by: bio.tools is listed by: Debian is related to: GenitoUrinary Development Molecular Anatomy Project is related to: ToppGene Suite
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NIDDK 1U01DK70219; NIDDK P30DK078392; NCRR U54 RR025216; NIDCR U01DE020049 |
PMID:20484371 |
Free |
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OMICS_02225, nlx_152801, biotools:toppcluster |
https://bio.tools/toppcluster |
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SCR_001503 |
ToppCluster: A multiple gene list feature analyzer for the dissection of biological systems |
2026-08-29 11:27:34 |
152 |
Collaborating for the Advancement of Interdisciplinary Research in Benign Urology
Resource Report
Resource Website
1+ mentions
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Collaborating for the Advancement of Interdisciplinary Research in Benign Urology (RRID:SCR_022876)
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CAIRIBU
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data or information resource, disease-related portal, portal, topical portal
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Community of researchers studying benign urology diseases at U54 O’Brien Cooperative Research Centers, P20 Exploratory Centers, and K12 Career Development Programs funded by the National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK), one of the institutes within the National Institutes of Health (NIH). CAIRIBU Centers and Programs are united around the overall objectives of improving our understanding of the mechanisms of urogenital diseases and developing clinical therapies for treating them by building collaborative and interactive research platforms that span the gamut from basic to translational to population research.
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urogenital diseases, clinical therapies development
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lists: Cell Ranger lists: Human Tissue and Organ for Research Resource (HTORR) lists: GenitoUrinary Development Molecular Anatomy Project lists: Multi-Disciplinary Approach to the Study of Chronic Pelvic Pain lists: Symptoms of Lower Urinary Tract Dysfunction Research Network (LURN) lists: Prevention of Lower Urinary Tract Symptoms lists: Pediatric KIDney Stone Care Improvement Network lists: SBUR - Society for Basic Urologic Research lists: Society of Benign Prostate Disease lists: Society of Urodynamics, Female Pelvic Medicine and Urogenital Reconstruction (SUFU) lists: Research on Calculus Kinetics Society lists: American Urological Association lists: Endourological Society lists: NIDDK Information Network (dkNET) lists: Tissue Microarray Database lists: Stanford University School of Medicine O’Brien Urology Research Center Biospecimen/Bioimaging Core Facility lists: O'Brien Center for Benign Urologic Research at University of Wisconsin-Madision and University of Massachusetts-Boston lists: Columbia University George M. O'Brien Urology Center
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Free, Freely available |
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SCR_022876 |
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2026-08-29 11:28:21 |
1 |