Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
Resource Report
Resource Website
10000+ mentions
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Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) (RRID:SCR_012820)
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RCSB PDB
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data or information resource, data repository, database, service resource, storage service resource
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Collection of structural data of biological macromolecules. Database of information about 3D structures of large biological molecules, including proteins and nucleic acids. Users can perform queries on data and analyze and visualize results.
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3-dimensional, annotation, molecule, nucleic acid, protein, visualization, sequence, function, macromolecule, ligand, model, dna, x-ray crystallography, ribosome, structure, oncogene, nucleic acids, molecular structure, cryomicroscopy, gold standard, FASEB list
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is used by: Structural Genomics Consortium is used by: Ligand Expo is used by: DARC - Database for Aligned Ribosomal Complexes is used by: FireDB is used by: Protein Data Bank Bind Database is used by: Protein Data Bank Site is used by: NIF Data Federation is used by: ChannelPedia is used by: MobiDB is used by: BALBES is used by: Structural Antibody Database is used by: BioLiP is recommended by: NIDDK Information Network (dkNET) is recommended by: National Library of Medicine is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: re3data.org is affiliated with: EMDataResource.org is affiliated with: ConSurf Database is related to: pdb-data is related to: PDB2MultiGif is related to: GlyProt is related to: pdb-care is related to: pdb2linucs is related to: GlyVicinity is related to: GlyTorsion is related to: GlySeq is related to: AffinDB is related to: StatAlign is related to: Community Structure-Activity Resource is related to: Binding MOAD is related to: ConSurf Database is related to: glycosciences.de is related to: DOMINE: Database of Protein Interactions is related to: Jenalib: Jena Library of Biological Macromolecules is related to: SynSysNet is related to: EMDataResource.org is related to: PDBe - Protein Data Bank in Europe is related to: TFinDIT is related to: HOLLOW is related to: ccPDB - Compilation and Creation of datasets from PDB is related to: DOMMINO - Database Of MacroMolecular INteractiOns is related to: InterEvol database is related to: Polbase is related to: PoSSuM is related to: ProtChemSI is related to: RNA CoSSMos is related to: PDBsum is related to: Worldwide Protein Data Bank (wwPDB) is related to: canSAR is related to: CAPS Database is related to: Dockground: Benchmarks, Docoys, Templates, and other knowledge resources for DOCKING is related to: Combinatorial Extension (CE) is related to: Metalloprotein Site Database is related to: PDBj - Protein Data Bank Japan is related to: Statistical Torsional Angles Potentials of NMR Refinement Database is related to: Metalloprotein Ligand Interaction Database is related to: CARP is related to: PDBTM is related to: RNA FRABASE - RNA FRAgments search engine and dataBASE is related to: AmiGO is related to: ConsensusPathDB is related to: Biological Magnetic Resonance Data Bank (BMRB) is related to: DNA DataBank of Japan (DDBJ) is related to: FlyMine is related to: NCBI Protein Database is related to: NCBI Nucleotide is related to: FunTree is related to: IndelFR - Indel Flanking Region Database is related to: NMR Restraints Grid is related to: Enzyme Structures Database is related to: Electron Microscopy Data Bank at PDBe (MSD-EBI) is related to: Worldwide Protein Data Bank (wwPDB) is related to: DNA DataBank of Japan (DDBJ) is related to: PDBe - Protein Data Bank in Europe is related to: MINAS - Metal Ions in Nucleic AcidS is related to: PDBj - Protein Data Bank Japan has parent organization: University of California at San Diego; California; USA has parent organization: Rutgers University; New Jersey; USA is parent organization of: RCSB PDB Software Tools is parent organization of: Protein Data Bank Markup Language is parent organization of: Ligand Expo works with: CellPhoneDB
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DOE ; NIH ; NSF DBI-1338415 |
PMID:12037327 |
Public, Acknowledgement requested |
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nif-0000-00135, SCR_017379, r3d100010327 |
http://www.rcsb.org, http://www.pdb.org, |
http://www.rcsb.org/pdb/ |
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SCR_012820 |
RCSB, Research Collaboratory for Structural Bioinformatics Protein Data Bank, The Protein Data Bank, PDB, Protein Databank, RCSB Protein Data Bank, Protein Data Bank |
2026-08-21 12:39:38 |
12459 |
Protein Data Bank Markup Language
Resource Report
Resource Website
1+ mentions
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Protein Data Bank Markup Language (RRID:SCR_005085)
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PDBML
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data or information resource, interchange format, markup language, narrative resource, standard specification
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Markup Language that provides a representation of PDB data in XML format. The description of this format is provided in XML schema of the PDB Exchange Data Dictionary. This schema is produced by direct translation of the mmCIF format PDB Exchange Data Dictionary Other data dictionaries used by the PDB have been electronically translated into XML/XSD schemas and these are also presented in the list below. * PDBML data files are provided in three forms: ** fully marked-up files, ** files without atom records ** files with a more space efficient encoding of atom records * Data files in PDBML format can be downloaded from the RCSB PDB website or by ftp. * Software tools for manipulating PDB data in XML format are available.
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xml
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is related to: RCSB PDB Software Tools has parent organization: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
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NSF ; NIGMS ; DOE ; NLM ; NCI ; NCRR ; NIBIB ; NINDS |
PMID:15509603 |
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nlx_144096 |
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SCR_005085 |
PDBML: Protein Data Bank Markup Language |
2026-08-21 12:37:30 |
2 |
Ligand Expo
Resource Report
Resource Website
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Ligand Expo (RRID:SCR_006636)
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data or information resource, database, resource
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An integrated data resource for finding chemical and structural information about small molecules bound to proteins and nucleic acids within the structure entries of the Protein Data Bank. Tools are provided to search the PDB dictionary for chemical components, to identify structure entries containing particular small molecules, and to download the 3D structures of the small molecule components in the PDB entry. A sketch tool is also provided for building new chemical definitions from reported PDB chemical components.
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element, fingerprint, formula, amino acid, aromatic ring, atom, bound, carbon, chemical, component, depot, ligand, molecular, molecule, nitrogen, nucleic acid, nucleotide, pharmaceutical, protein, small molecule, structure, macromolecule, model
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uses: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) uses: Worldwide Protein Data Bank (wwPDB) has parent organization: Rutgers University; New Jersey; USA has parent organization: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
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NSF ; NIGMS ; DOE ; NLM ; NCI ; NCRR ; NIBIB ; NINDS ; NIDDK |
PMID:15059838 |
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nif-0000-21237, OMICS_02751 |
http://ligand-depot.rutgers.edu/ |
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SCR_006636 |
Ligand Depot |
2026-08-21 12:38:00 |
0 |
RCSB PDB Software Tools
Resource Report
Resource Website
1+ mentions
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RCSB PDB Software Tools (RRID:SCR_000035)
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data or information resource, portal, software resource, topical portal
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THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. Information Portal to Biological Macromolecular Structures provides variety of software tools made available through the RCSB. These tools include: data extraction and deposition preparation tools, data format conversion and validation tools, data parsing tools, dictionary and data management tools, visualization tools that support PDBx/mmCIF, and other PDBx/mmCIF software library tools.
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Information Portal, Biological Macromolecular Structure, RCSB, RCSB software tools, data extraction, format conversion, data parsing, data management, visualization, pdbx/mmcif, pdbx, mmcif
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is listed by: LabWorm is related to: Protein Data Bank Markup Language has parent organization: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
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THIS RESOURCE IS NO LONGER IN SERVICE |
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nif-0000-31399 |
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SCR_000035 |
RCSB Software Tools |
2026-08-21 12:36:06 |
2 |
National Library of Medicine
Resource Report
Resource Website
100+ mentions
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National Library of Medicine (RRID:SCR_011446)
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NLM
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government granting agency
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NLM collects, organizes, and makes available biomedical science information to scientists, health professionals, and the public. The Library's Web-based databases, including PubMed/Medline and MedlinePlus, are used extensively around the world. NLM conducts and supports research in biomedical communications; creates information resources for molecular biology, biotechnology, toxicology, and environmental health; and provides grant and contract support for training, medical library resources, and biomedical informatics and communications research. Celebrating its 175th anniversary in 2011, the National Library of Medicine (NLM), in Bethesda, Maryland, is a part of the National Institutes of Health, U.S. Department of Health and Human Services (HHS). Since its founding in 1836 as the library of the U.S. Army Surgeon General, NLM has played a pivotal role in translating biomedical research into practice. It is the world's largest biomedical library and the developer of electronic information services that deliver trillions of bytes of data to millions of users every day. Scientists, health professionals, and the public in the United States and around the globe search the Library's online information resources more than 1 billion times each year. The Library is open to all and has many services and resources for scientists, health professionals, historians, and the general public. NLM has over 17 million books, journals, manuscripts, audiovisuals, and other forms of medical information on its shelves, making it the largest health-science library in the world. In today's increasingly digital world, NLM carries out its mission of enabling biomedical research, supporting health care and public health, and promoting healthy behavior by: * Acquiring, organizing, and preserving the world's scholarly biomedical literature; * Providing access to biomedical and health information across the country in partnership with the 5,800-member National Network of Libraries of Medicine (NN/LM); * Serving as a leading global resource for building, curating and providing sophisticated access to molecular biology and genomic information, including those from the Human Genome Project and NIH Common Fund; * Creating high-quality information services relevant to toxicology and environmental health, health services research, and public health; * Conducting research and development on biomedical communications systems, methods, technologies, and networks and information dissemination and utilization among health professionals, patients, and the general public; * Funding advanced biomedical informatics research and serving as the primary supporter of pre- and post-doctoral research training in biomedical informatics at 18 U.S. universities.
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is used by: DisGeNET recommends: Brain Image Library recommends: Data Archive BRAIN Initiative recommends: OpenNeuro recommends: Brain Observatory Storage Service and Database (BossDB) recommends: CRCNS recommends: NCBI database of Genotypes and Phenotypes (dbGap) recommends: NIMH Data Archive recommends: ENCODE recommends: Genotype-Tissue Expression recommends: HMP Data Analysis and Coordination Center recommends: Illuminating the Druggable Genome recommends: Kids First Data Resource Portal recommends: HMS LINCS Database recommends: Metabolomics Workbench recommends: Patient-Reported Outcomes Measurement Information System recommends: Cancer Nanotechnology Laboratory (caNanoLab) recommends: Cancer Imaging Archive (TCIA) recommends: Network Data Exchange (NDEx) recommends: eyeGENE recommends: National Eye Institute (NEI) Commons recommends: National Sleep Research Resource (NSRR) recommends: CardioVascular Research Grid (CVRG) recommends: AMP-AD Knowledge Portal recommends: National Archive of Computerized Data on Aging (NACDA) recommends: National Institute on Aging Genetics of Alzheimer’s Disease Data Storage Site (NIAGADS) recommends: Immune Tolerance Network TrialShare recommends: The Immunology Database and Analysis Portal (ImmPort) recommends: VectorBase recommends: Virus Pathogen Resource (ViPR) recommends: LONI Image and Data Archive recommends: NeuroImaging Tools and Resources Collaboratory (NITRC) recommends: Child Language Data Exchange System (CHILDES) recommends: Data and Specimen Hub (NICHD DASH) recommends: National Children's Study (NCS) Archive recommends: PhonBank recommends: Archive of Data on Disability to Enable Policy (ADDEP) recommends: National Addiction and HIV Data Archive Program (NAHDAP) recommends: Neuroscience Information Framework recommends: National Institute on Drug Abuse Center for Genetic Studies recommends: NIDA Data Share recommends: AphasiaBank recommends: FluencyBank recommends: NIDDK Central Repository recommends: NIDDK Information Network (dkNET) recommends: Nuclear Receptor Signaling Atlas recommends: Chemical Effects in Biological Systems (CEBS) recommends: Cell Image Library (CIL) recommends: PhysioNet recommends: Transporter Classification Database recommends: Biological General Repository for Interaction Datasets (BioGRID) recommends: Federal Interagency Traumatic Brain Injury Research Informatics System recommends: NeuroMorpho.Org recommends: Parkinson’s Disease Biomarkers Program Data Management Resource (PDBP DMR) recommends: The NINDS Human Cell and Data Repository (NHCDR) recommends: ClinicalTrials.gov recommends: dbSNP recommends: dbVar recommends: GenBank recommends: Gene Expression Omnibus (GEO) recommends: NCBI Sequence Read Archive (SRA) recommends: 1000 Functional Connectomes Project recommends: exRNA Atlas recommends: Accelerating Medicines Partnership Type 2 Diabetes Knowledge Portal (AMP-T2D) recommends: PeptideAtlas recommends: Zebrafish Information Network (ZFIN) recommends: FlyBase recommends: Database of Interacting Proteins (DIP) recommends: Mouse Genome Informatics (MGI) recommends: UniProt recommends: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) recommends: European Nucleotide Archive (ENA) recommends: Analysis, Visualization, and Informatics Lab-space (AnVIL) recommends: DNA DataBank of Japan (DDBJ) recommends: UniProtKB recommends: SPARC Portal is related to: CureHunter is related to: Entrez has parent organization: National Institutes of Health is parent organization of: MalariaWorld is parent organization of: GenNav is parent organization of: NIH Common Data Element Repository is parent organization of: MEDLINE is parent organization of: ClinicalTrials.gov is parent organization of: Developmental and Reproductive Toxicology Database is parent organization of: Directory of Health Organizations Online is parent organization of: Haz-Map: Occupational Exposure to Hazardous Agents is parent organization of: Hazardous Substances Data Bank is parent organization of: Drug Information Portal is parent organization of: NIH Data Sharing Repositories is parent organization of: MeSH is parent organization of: Unified Medical Language System is parent organization of: NCBI is parent organization of: MedlinePlus is parent organization of: RxNorm is parent organization of: Bibliography on Alternatives to the Use of Live Vertebrates in Biomedical Research and Testing is parent organization of: Chemical Carcinogenesis Research Information System is parent organization of: International Toxicity Estimates for Risk is parent organization of: BLAST Assembled RefSeq Genomes is parent organization of: Cross-Sectional and Longitudinal Aging Study is parent organization of: OrbitProject is parent organization of: Household Products Database is parent organization of: Entrez Utilities is parent organization of: Epidemiology of Chronic Disease in the Oldest Old
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nlx_inv_1005117 |
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SCR_011446 |
U.S. National Library of Medicine |
2026-08-15 11:24:30 |
412 |
pdb2linucs
Resource Report
Resource Website
1+ mentions
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pdb2linucs (RRID:SCR_001566)
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pdb2linucs
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analysis service resource, data analysis service, production service resource, service resource
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Service that automatically extracts carbohydrate information from pdb-files and displays it in LINUCS or IUPAC notation. Many pdb-files contain carbohydrate structures. Since there is not such a standard nomenclature like it exists for amino acids, it is difficult to find the carbohydrate information. Sometimes entire oligosaccharides are encoded in one single residue. Information about carbohydrate linkages is often missing, and if it is present, it is not in a unique format and therefore also difficult to find.
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carbohydrate, linucs, iupac, structure
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is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is related to: LINUCS is related to: GlyTorsion is related to: GlySeq is related to: CARP has parent organization: glycosciences.de
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DFG |
PMID:15010309 |
THIS RESOURCE IS NO LONGER IN SERVICE |
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nlx_152879 |
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http://www.dkfz-heidelberg.de/spec/pdb2linucs/ |
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SCR_001566 |
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2026-08-20 09:25:24 |
1 |
pdb-care
Resource Report
Resource Website
1+ mentions
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pdb-care (RRID:SCR_001562)
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pdb-care
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analysis service resource, data analysis service, production service resource, service resource
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Tool that checks carbohydrate residues in pdb-files for errors, aiding experimentalists in detecting discrepancies in connectivities and nomenclature.
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carbohydrate, 3d structure, residue
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is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) has parent organization: glycosciences.de
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DFG |
PMID:15180909 |
THIS RESOURCE IS NO LONGER IN SERVICE |
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nlx_152877 |
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SCR_001562 |
pdb-care: PDB CArbohydrate REsidue check, pdbcare, PDB CArbohydrate REsidue check |
2026-08-20 09:25:24 |
4 |
Community Structure-Activity Resource
Resource Report
Resource Website
10+ mentions
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Community Structure-Activity Resource (RRID:SCR_002206)
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CSAR
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data or information resource, data repository, data set, service resource, storage service resource
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Experimental datasets of crystal structures and binding affinities for diverse protein-ligand complexes. Some datasets are generated in house while others are collected from the literature or deposited by academic labs, national centers, and the pharmaceutical industry. For the community to improve their approaches, they need exceptional datasets to train scoring functions and develop new docking algorithms. They aim to provide the highest quality data for a diverse collection of proteins and small molecule ligands. They need input from the community in developing target priorities. Ideal targets will have many high-quality crystal structures (apo and 10-20 bound to diverse ligands) and affinity data for 25 compounds that range in size, scaffold, and logP. It is best if the ligand set has several congeneric series that span a broad range of affinity, with low nanomolar to mid-micromolar being most desirable. They prefer Kd data over Ki data over IC50 data (no % activity data). They will determine solubility, pKa, logP/logD data for the ligands whenever possible. They have augmented some donated IC50 data by determining Kon/Koff and ITC data.
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crystal structure, binding affinity, protein-ligand complex, protein, small molecule, ligand, compound
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is used by: NIF Data Federation is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) has parent organization: University of Michigan; Ann Arbor; USA
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NIGMS |
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THIS RESOURCE IS NO LONGER IN SERVICE |
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nlx_154720 |
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SCR_002206 |
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2026-08-21 12:36:37 |
16 |
ConSurf Database
Resource Report
Resource Website
100+ mentions
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ConSurf Database (RRID:SCR_002320)
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ConSurfDB
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data or information resource, database, service resource
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Provides pre-calculated evolutionary conservation profiles for proteins of known structure in the PDB. Enables flexibility in setting the parameters of the calculation, and accepts optional uploads of atomic coordinates, multiple sequence alignments, and phylogenetic trees for use in the calculation of conservation profiles.
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PDB, Protein DataBase, evolution, conservation, protein, structure, pre-calculated, profile, FASEB list
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is listed by: bio.tools is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) has parent organization: Tel Aviv University; Ramat Aviv; Israel
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Tel Aviv University; Ramat Aviv; Israel |
PMID:20478830 PMID:15980475 PMID:12499312 PMID:11243830 |
Free, Freely available |
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nif-0000-21098, SCR_007609, BioTools:consurf-db, nif-0000-02685 |
http://bental.tau.ac.il/new_ConSurfDB/, https://bio.tools/consurf-db |
http://consurf-hssp.tau.ac.il |
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SCR_002320 |
, consurf-db, ConSurf-DataBase, ConSurf-DB, ConSurfDB, ConSurf Server Database, ConSurfDataBase, ConSurf- Data Base |
2026-08-21 12:36:41 |
318 |
glycosciences.de
Resource Report
Resource Website
10+ mentions
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glycosciences.de (RRID:SCR_002324)
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GLYCOSCIENCES.de
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data or information resource, database, portal, topical portal
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Portal of glycoinformatics resources including databases and bioinformatics tools for glycobiology and glycomics research. Databases include a bibliography, structure, nuclear magnetic resonance (NMR), mass spectroscopy (ms) and a PDB search.
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glycoinformatics, glycobiology, glycomics, carbohydrate, 3d structure, data analysis service, modeling, structure, nuclear magnetic resonance, mass spectroscopy, protein, glycan
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lists: LiGraph lists: pdb-data lists: PDB2MultiGif is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) has parent organization: University of Giessen; Hesse; Germany is parent organization of: GlyProt is parent organization of: Distance Mapping is parent organization of: pdb-care is parent organization of: pdb2linucs is parent organization of: GlyVicinity is parent organization of: GlyTorsion is parent organization of: GlySeq is parent organization of: LINUCS is parent organization of: sumo is parent organization of: GlycoFragment is parent organization of: Glyco-CD is parent organization of: GlycoMapsDB is parent organization of: SWEET-DB is parent organization of: CARP
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DFG |
PMID:16239495 |
Free, Public |
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nif-0000-21103 |
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SCR_002324 |
Glycosciences |
2026-08-21 12:36:41 |
25 |
Structural Genomics Consortium
Resource Report
Resource Website
50+ mentions
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Structural Genomics Consortium (RRID:SCR_003890)
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SGC
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consortium, data or information resource, organization portal, portal
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Charity registered in United Kingdom whose mission is to accelerate research in new areas of human biology and drug discovery.Not for profit, public-private partnership that carries out basic science of relevance to drug discovery whose core mandate is to determine 3D structures on large scale and cost effectively targeting human proteins of biomedical importance and proteins from human parasites that represent potential drug targets.
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basic science, drug discovery, drug, structural genomics, genomics, 3d structure, protein, human parasite, drug target, structure, human protein, protocol, phylogenetic tree, histone tail, high-throughput protein crystallization, lex bubbling system, reagent, epigenetic probe, antibody, vector, plasmid, construct
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uses: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) uses: Addgene uses: GenBank is related to: AbbVie is related to: Canada Foundation for Innovation is related to: Canadian Institutes of Health Research is related to: Genome Canada is related to: Janssen Research and Development is related to: Ontario Ministry of Economic Development Employment and Infrastructure is related to: Pfizer Animal Genetics is related to: Wellcome Trust has parent organization: University of Oxford; Oxford; United Kingdom has parent organization: University of Toronto; Ontario; Canada
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Cancer, Diabetes, Obesity, Psychiatric disorder, Altzheimer |
AbbVie ; Boehringer Ingelheim ; Canada Foundation for Innovation ; Canadian Institutes of Health Research ; Genome Canada ; GlaxoSmithKline ; Janssen ; Lilly Canada ; Novartis Research Foundation ; Ontario Ministry of Economic Development Employment and Infrastructure ; Pfizer ; Takeda ; Wellcome Trust |
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Restricted |
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nlx_158220 |
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SCR_003890 |
Structural Genomics Consortium |
2026-08-21 12:37:23 |
65 |
PDBe - Protein Data Bank in Europe
Resource Report
Resource Website
50+ mentions
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PDBe - Protein Data Bank in Europe (RRID:SCR_004312)
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PDBe
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data or information resource, data repository, database, service resource, storage service resource
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The European resource for the collection, organization and dissemination of data on biological macromolecular structures. In collaboration with the other worldwide Protein Data Bank (wwPDB) partners - the Research Collaboratory for Structural Bioinformatics (RCSB) and BioMagResBank (BMRB) in the USA and the Protein Data Bank of Japan (PDBj) - they work to collate, maintain and provide access to the global repository of macromolecular structure data. The main objectives of the work at PDBe are: * to provide an integrated resource of high-quality macromolecular structures and related data and make it available to the biomedical community via intuitive user interfaces. * to maintain in-house expertise in all the major structure-determination techniques (X-ray, NMR and EM) in order to stay abreast of technical and methodological developments in these fields, and to work with the community on issues of mutual interest (such as data representation, harvesting, formats and standards, or validation of structural data). * to provide high-quality deposition and annotation facilities for structural data as one of the wwPDB deposition sites. Several sophisticated tools are also available for the structural analysis of macromolecules.
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x-ray, nmr, cryo-em, hybrid method, dna, protein, rna, sugar, ligand, virus, compound, fold, enzyme, 3d spatial image, structure, macromolecule, protein-protein interaction, gold standard, bio.tools
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is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: re3data.org is listed by: bio.tools is listed by: Debian is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is related to: DNA DataBank of Japan (DDBJ) is related to: EMDataResource.org is related to: Worldwide Protein Data Bank (wwPDB) is related to: Biological Magnetic Resonance Data Bank (BMRB) is related to: DNA DataBank of Japan (DDBJ) is related to: Worldwide Protein Data Bank (wwPDB) is related to: PDBj - Protein Data Bank Japan is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) has parent organization: European Bioinformatics Institute is parent organization of: Electron Microscopy Data Bank at PDBe (MSD-EBI) works with: MOLEonline
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European Molecular Biology Laboratory; Heidelberg; Germany ; Wellcome Trust ; BBSRC ; NIH ; European Union ; MRC ; CCP4 |
PMID:21045060 PMID:21460450 PMID:19858099 |
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r3d100012791, biotools:pdbe, nlx_32372 |
https://bio.tools/pdbe, https://doi.org/10.17616/R3J226 |
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SCR_004312 |
Protein DataBank Europe, Protein DataBank in Europe, PDBe, Protein Data Bank in Europe, Protein Data Bank Europe, Macromolecular Structure Database |
2026-08-21 12:37:18 |
55 |
InterEvol database
Resource Report
Resource Website
10+ mentions
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InterEvol database (RRID:SCR_006054)
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InterEvol
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analysis service resource, data analysis service, data or information resource, database, production service resource, service resource, software resource
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InterEvol database is designed for the analysis of co-evolution events at the interface of known structures of hetero- and homo-oligomers. The database can be search and analyzed through 3 interconnected levels of analysis: * From a Keyword or the PDB entry of a complex, you can browse: ** structural homologs for every chain in other complexes ** structural interologs for every interface ** retrieve pre-computed sequence alignments in diverse species * From 1 or 2 sequences of interacting partners: ** build 2 multiple sequence alignments with the same species ordered in each ** query the InterEvol database with alignments using profile-profile comparison method * Visualize structure vs sequence alignment at the complex interface ** A dedicated Pymol plugin is provided ** Alignment views in Pymol are interactively restricted to the residues selected at the interface
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structure, evolution, protein complex, interface, protein complex, sequence alignment, plug in, protein structure, visualization, pymol plugin, structural homolog, structural interolog, bio.tools
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is listed by: Debian is listed by: bio.tools is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) has parent organization: CEA; Gif sur Yvette; France
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Commissariat a lEnergie Atomique ; ANR HPGenVar |
PMID:22053089 |
Free and open to all users - no login requirement |
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nlx_151453, biotools:interevol |
https://bio.tools/interevol |
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SCR_006054 |
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2026-08-21 12:37:41 |
10 |
Polbase
Resource Report
Resource Website
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Polbase (RRID:SCR_006107)
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data or information resource, data repository, database, service resource, storage service resource
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Repository of biochemical, genetic, and structural information about DNA Polymerases. Polbase is designed to compile detailed results of polymerase experimentation, presenting them in a dynamic view to inform further research. After validation, results from references are displayed in context with relevant experimental details and are always traceable to their source publication. Polbase is connected to other resources, including PubMed, UniProt and the RCSB Protein Data Bank, to provide multi-faceted views of polymerase knowledge. In addition to a simple web interface, Polbase data is exposed for custom analysis by external software.
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dna polymerase repository, bio.tools
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is listed by: Debian is listed by: bio.tools is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is related to: PubMed is related to: UniProt has parent organization: New England Biolabs
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Small Business Innovation Research ; NIGMS 1R44GM087021 |
PMID:21993301 |
Free, Open unspecified license, Acknowledgement required |
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biotools:polbase, nlx_151580 |
https://bio.tools/polbase |
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SCR_006107 |
DNA Polymerase Database |
2026-08-21 12:37:57 |
0 |
NMR Restraints Grid
Resource Report
Resource Website
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NMR Restraints Grid (RRID:SCR_006127)
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NMR Restraints Grid
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data or information resource, database, image collection
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Original NMR (nuclear magnetic resonance) data as collected for over 2500 protein and nucleic acid structures with corresponding PDB entries. In addition to the original restraints, most of the distance, dihedral angle and RDC restraint data (>85%) were parsed, and those in over 500 entries were converted and filtered. The converted and filtered data sets constitute the Database Of Converted Restraints (DOCR) and the Filtered Restraints Database (FRED) respectively as described in the references. There are 9,672,968 parsed constraints in 7159 entries. (Mar. 2013)
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nmr, biomolecule, structure, magnetic resonance, database of converted restraint, filtered restraints database, fred, mri, protein, nucleic acid
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is related to: NRG-CING is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) has parent organization: Biological Magnetic Resonance Data Bank (BMRB)
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European Union FP6 contract QLG2-CT-2000-01313; NLM LM05799 |
PMID:12766409 PMID:16041478 |
Please acknowledge the references in publications where the data from this site have been utilized. |
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nlx_151606 |
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SCR_006127 |
BMRB NMR Restraints Grid |
2026-08-21 12:37:57 |
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GlyVicinity
Resource Report
Resource Website
1+ mentions
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GlyVicinity (RRID:SCR_001567)
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GlyVicinity
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analysis service resource, data analysis service, data or information resource, data set, production service resource, service resource
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Service to generate statistics about the amino acids present in the vicinity of carbohydrate residues. Besides the amino acids in sequential neighborhood of glycosylation sites (analysed by GlySeq), those in the spatial vicinity of carbohydrate residues determine the characteristics of glycoproteins. The latter ones are of special interest for the examination of carbohydrate-binding proteins. Since carbohydrate moieties are not covalently bound in these cases, sequence analysis comparable to that for glycosylation sites is not possible there. GlyVicinity performs statistical analyses on the types of amino acids around carbohydrate chains and on the atoms forming the closest contacts between protein and carbohydrate residues. Results are based on weekly updated datasets derived from the Protein Data Bank (PDB).
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carbohydrate, amino acid, carbohydrate residue, statistical analysis
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is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) has parent organization: glycosciences.de
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DFG |
PMID:15608187 |
THIS RESOURCE IS NO LONGER IN SERVICE |
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nlx_152880 |
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SCR_001567 |
GlyVicinity: Analysis of Amino Acids in the Vicinity of Carbohydrate Residues contained in the Protein Data Bank (PDB) |
2026-08-21 12:36:32 |
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NIDDK Information Network (dkNET)
Resource Report
Resource Website
10+ mentions
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NIDDK Information Network (dkNET) (RRID:SCR_001606)
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dkNET
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community building portal, data or information resource, database, portal
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The NIDDK Information Network (dkNET) is a community-based network to serve needs of basic and clinical investigators that includes large pools of data and research resources relevant to mission of National Institute of Diabetes and Digestive and Kidney Disease.
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dknet, data resource, diabetes, kidney, liver, disease, urology, hematology, digestive, nutrition, endocrine, obesity, metabolic
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uses: NIDDK Central Repository uses: Addgene uses: NIF Data Federation uses: Antibody Registry uses: Nuclear Receptor Signaling Atlas uses: GenitoUrinary Development Molecular Anatomy Project uses: Diabetic Complications Consortium uses: National Mouse Metabolic Phenotyping Centers uses: T1DBase uses: Beta Cell Biology Consortium uses: Grants.gov uses: dkNET Community Pilot Funding Opportunities uses: Integrated Grants uses: ClinicalTrials.gov uses: Integrated Animals uses: Intestinal Stem Cell Consortium recommends: Biological General Repository for Interaction Datasets (BioGRID) recommends: Cell Image Library (CIL) recommends: Accelerating Medicines Partnership Type 2 Diabetes Knowledge Portal (AMP-T2D) recommends: NIDDK Central Repository recommends: Network Data Exchange (NDEx) recommends: PeptideAtlas recommends: International Mouse Phenotyping Consortium (IMPC) recommends: FlyBase recommends: Metabolomics Workbench recommends: Zebrafish Information Network (ZFIN) recommends: Mouse Genome Informatics (MGI) recommends: Database of Interacting Proteins (DIP) recommends: UniProt recommends: PhysioNet recommends: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) recommends: ClinicalTrials.gov recommends: dbVar recommends: Analysis, Visualization, and Informatics Lab-space (AnVIL) recommends: WormBase recommends: dbSNP recommends: GenBank recommends: DNA DataBank of Japan (DDBJ) recommends: Database of Genomic Variants Archive (DGVa) recommends: NCBI Sequence Read Archive (SRA) recommends: MGnify recommends: European Variation Archive (EVA) recommends: European Nucleotide Archive (ENA) recommends: Gene Expression Omnibus (GEO) recommends: NCBI Assembly Archive Viewer recommends: Protein Circular Dichroism Data Bank (PCDDB) recommends: miRBase recommends: Trace Archive recommends: UniProtKB recommends: Coherent X-Ray Imaging Data Bank (CXIDB) recommends: Electron Microscopy Data Bank at PDBe (MSD-EBI) recommends: Worldwide Protein Data Bank (wwPDB) recommends: Biological Magnetic Resonance Data Bank (BMRB) recommends: Crystallography Open Database (COD) recommends: PDBj - Protein Data Bank Japan recommends: Inorganic Crystal Structure Database (ICSD) recommends: Structural Biology Grid recommends: NCBI database of Genotypes and Phenotypes (dbGap) recommends: ArrayExpress recommends: EMDataResource.org recommends: Cambridge Crystallographic Data Centre (CCDC) recommends: PDBe - Protein Data Bank in Europe recommends: Japanese Genotype-phenotype Archive (JGA) recommends: PubChem BioAssay recommends: European Genome phenome Archive recommends: GenomeRNAi recommends: ProteomeXchange recommends: MetaboLights recommends: IntAct recommends: FLOWRepository recommends: Proteomics Identifications (PRIDE) recommends: Global Proteome Machine Database (GPM DB) recommends: Kinetic Models of Biological Systems (KiMoSys) recommends: ChEMBL recommends: Cancer Imaging Archive (TCIA) recommends: Image Data Resource (IDR) recommends: The Immunology Database and Analysis Portal (ImmPort) recommends: PubChem Substance recommends: NeuroMorpho.Org recommends: Cancer Nanotechnology Laboratory (caNanoLab) recommends: SICAS Medical Image Repository recommends: Mass spectrometry Interactive Virtual Environment (MassIVE) recommends: Dryad Digital Repository recommends: ZENODO recommends: NIH Figshare Archive recommends: STRENDA recommends: OpenNeuro recommends: Influenza Research Database (IRD) recommends: 1000 Functional Connectomes Project recommends: Mendeley Data recommends: Open Science Framework recommends: Dataverse Network Project recommends: NIMH Data Archive recommends: FigShare recommends: National Addiction and HIV Data Archive Program (NAHDAP) recommends: SPARC Portal recommends: Vivli is recommended by: National Library of Medicine lists: Diabetic Complications Consortium lists: Nephromine lists: LIPID Metabolites And Pathways Strategy lists: METLIN lists: NIDDK Inflammatory Bowel Disease Genetics Consortium lists: Body Mass Index Calculator lists: Symptom Score for Benign Prostatic Hyperplasia lists: Genetics of Kidneys in Diabetes lists: Type 1 Diabetes - Rapid Access to Intervention Development lists: TEDDY lists: Trans-Institute Angiogenesis Research Program lists: Consortium for Radiologic Imaging Studies of Polycystic Kidney Disease lists: Current Research Information System lists: Healthy People lists: Acute Liver Failure Study Group lists: Collaborative Islet Transplant Registry lists: Diabetes Prevention Type 1 lists: Epidemiology of Diabetes Interventions and Complications lists: NIH Division of Nutrition Research Coordination lists: Human Nutrition Research Information Management lists: Type 1 Diabetes Resource lists: National Diabetes Education Program lists: Pediatric Acute Liver Failure Study lists: Globin Gene Server lists: NIH Chronic Prostatitis Symptom Index lists: Sequencing of Idd regions in the NOD mouse genome lists: Look AHEAD lists: Teen-Longitudinal Assessment of Bariatric Surgery lists: Adult to Adult Living Donor Liver Transplantation Cohort Study lists: Behavior Enhances Drug Reduction of Incontinence lists: BARI 2D lists: Childhood Liver Disease Research and Education Network lists: Standardization of C-peptide measurements lists: CKID A Prospective Cohort Study of Kidney Disease in Children lists: Diabetes Prevention Program lists: Diabetes Prevention Program Outcomes Study lists: Irritable Bowel Syndrome Outcome Study lists: Folic Acid for Vascular Outcome Reduction in Transplantation lists: Type 1 Diabetes TrialNet lists: Diabetes Research in Children Network lists: Diabetic Retinopathy Clinical Research Network lists: Clinical Islet Transplantation Study lists: Nonalcoholic Steatohepatitis Clinical Research Network lists: Drug-Induced Liver Injury Network lists: Family Investigation of Nephropathy of Diabetes lists: Frequent Hemodialysis Network Daily Trial lists: HEALTHY study lists: SISTEr lists: Urinary Incontinence Treatment Network lists: TINSAL-T2D lists: TOMUS lists: Type 1 Diabetes Genetics Consortium lists: Center for Inherited Disease Research lists: Action to Control Cardiovascular Disease Risk in Diabetes Follow-up Study (ACCORDION) lists: Predicting Response to Standardized Pediatric Colitis Therapy (PROTECT) lists: Lifestyle Interventions for Expectant Moms (LIFE-Moms) lists: Hyperglycemia and Pregnancy Outcomes Follow-Up Study Consortium (HAPO-FUS) lists: Nephrotic Syndrome Study Network (NEPTUNE) lists: CKD Biomarkers Consortium lists: Porphyria Consortium lists: Vitamin D to Prevent Type 2 Diabetes (D2d) lists: Glycemic Reduction Approaches in Diabetes: A Comparative Effectiveness Study (GRADE) lists: Symptoms of Lower Urinary Tract Dysfunction Research Network (LURN) lists: Clinical Islet Transplantation Consortium (CITC) lists: Restoring Insulin Secretion Consortium (RISE) lists: Assessment Serial Evaluation and Subsequent Sequelae in Acute Kidney Injury (ASSESS-AKI) lists: Integrated Islet Distribution Program (IIDP) lists: Human Islet Research Network (HIRN) lists: Rare Kidney Stone Consortium (RKSC) lists: Evaluating Predictors and Interventions in Sphincter of Oddi Dysfunction lists: Efficacy and Mechanisms of Glutamine Dipeptide in the Surgical Intensive Care Unit lists: Intestinal Stem Cell Consortium lists: RiVuR lists: Gastroparesis Clinical Research Consortium lists: Urologic Diseases in America lists: United States Renal Data System lists: HALT PKD lists: Chronic Renal Insufficiency Cohort Study lists: Viral Resistance to Antiviral Therapy of Chronic Hepatitis C lists: Peginterferon and Ribavirin for Pediatric Patients with Chronic Hepatitis C lists: HALT-C Trial lists: TRIGR lists: Treatment Options for type 2 Diabetes in Adolescents and Youth lists: Study of Nutrition in Acute Pancreatitis lists: SEARCH for Diabetes in Youth lists: Organ Procurement and Transplantation Network lists: Nuclear Receptor Signaling Atlas lists: NIH Common Fund lists: Mutant Mouse Resource and Research Center lists: GenitoUrinary Development Molecular Anatomy Project lists: National Mouse Metabolic Phenotyping Centers lists: IPD-MHC- Major Histocompatibility Complex lists: High-dose Ursodiol Therapy of Primary Sclerosing Cholangitis lists: Hepatitis B Research Network lists: Functional Dyspepsia Treatment Trial lists: Cooperative Study Group for Autoimmune Disease Prevention lists: Clinical Outcomes Research Initiative lists: BISC lists: Beta Cell Biology Consortium lists: Autoimmunity Centers of Excellence lists: HemBase lists: Longitudinal Assessment of Bariatric Surgery lists: Minnesota Liver Tissue Cell Distribution System lists: Knockout Mouse Project lists: Immune Tolerance Network (ITN) lists: Accelerating Medicines Partnership Type 2 Diabetes Knowledge Portal (AMP-T2D) lists: ReBuilding a Kidney lists: GOA lists: NURSA Transcriptomine lists: STRING lists: Nuclear Receptor Cistrome lists: EuReGene lists: Embryo Images Normal and Abnormal Mammalian Development lists: Stem Cell Genome Anatomy Projects lists: Eurexpress lists: Gene Expression Database lists: ToppGene Suite lists: GATACA GUDMAP Gene Explorer lists: Knockout Mouse Project Repository lists: Cornell Heart Lung Blood Resource for Optogenetic Mouse Signaling (CHROMus) lists: International Mouse Phenotyping Consortium (IMPC) lists: Juvenile Diabetes Research Foundation lists: NIDDK Central Repository lists: Biospecimens/Biorepositories: Rare Disease-HUB (RD-HUB) lists: Biologic Specimen and Data Repository Information Coordinating Center (BioLINCC) lists: T1DBase lists: NCI Specimen Resource Locator lists: NCBI database of Genotypes and Phenotypes (dbGap) lists: caHUB lists: T1D Exchange lists: NCBI lists: LANDMark BioBanks lists: Diabetes Research Centers lists: Network for Pancreatic Organ Donors with Diabetes lists: Nutrition and Obesity Research Centers lists: Baltimore Polycystic Kidney Disease (PKD) Research and Clinical Core Center Antibody Validation and Vector Core lists: Baltimore Polycystic Kidney Disease (PKD) Research and Clinical Core Center Cell Culture and Engineering lists: Baltimore Polycystic Kidney Disease (PKD) Research and Clinical Core Center Clinical and Translational Core Resource lists: Baltimore Polycystic Kidney Disease (PKD) Research and Clinical Core Center Mouse Models and Biobank lists: Baltimore Polycystic Kidney Disease (PKD) Research and Clinical Core Center lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Bioinformatics Resource lists: Boston Area Diabetes Endocrinology Research Center Cell Biology and Morphology Core Facility lists: Boston Area Diabetes Endocrinology Research Center Metabolic Physiology and Energy Balance Core Facility lists: Boston Area Diabetes Endocrinology Research Center Molecular Biology lists: Boston Area Diabetes Endocrinology Research Center Pancreatic Islet lists: Boston Area Diabetes Endocrinology Research Center lists: Boston Area Diabetes Endocrinology Research Center Transgenic lists: Boston Children's Hospital Center of Excellence in Molecular Hematology Mouse Embryonic Stem(ES) Cell and Gene Targeting Core lists: Boston Children's Hospital Center of Excellence in Molecular Hematology lists: Boston Children's Hospital Center of Excellence in Molecular Hematology Stem Cell Engineering and Analysis Core lists: Boston Children's Hospital Center of Excellence in Molecular Hematology Zebrafish Core lists: Boston Nutrition and Obesity Research Centers Adipose Biology and Nutrient Metabolism Core lists: Boston Nutrition and Obesity Research Centers Administrative Core lists: Boston Nutrition and Obesity Research Centers Epidemiology and Genetics Core lists: Boston Nutrition and Obesity Research Centers Functional Genomics and Bioinformatics Core lists: Boston Nutrition and Obesity Research Centers lists: Boston Nutrition and Obesity Research Centers Transgenic Core lists: Center for American Indian and Alaska Native Diabetes Translational Research Administrative Core lists: Center for American Indian and Alaska Native Diabetes Translational Research National Resource lists: Center for American Indian and Alaska Native Diabetes Translational Research Resource lists: Center for American Indian and Alaska Native Diabetes Translational Research lists: Center for Iron and Heme Disorders at the University of Utah Administrative Core lists: Center for Iron and Heme Disorders at the University of Utah Iron and Heme Core lists: Center for Iron and Heme Disorders at the University of Utah Metabolomics Core lists: Center for Iron and Heme Disorders at the University of Utah Mutation Generation and Detection Core lists: Center for Iron and Heme Disorders at the University of Utah lists: Center for the Study of Inflammatory Bowel Disease Clinical Core lists: Center for the Study of Inflammatory Bowel Disease Genetic Animal Models Core lists: Center for the Study of Inflammatory Bowel Disease Genetics Genomics and Molecular Biology Core lists: Center for the Study of Inflammatory Bowel Disease Immunology Core lists: Center for the Study of Inflammatory Bowel Disease Morphology Core lists: Center for the Study of Inflammatory Bowel Disease lists: Centers for Diabetes Translation Research lists: Chicago Center for Diabetes Translation Research Health Disparities and Community-Based Participatory Research Core lists: Chicago Center for Diabetes Translation Research Outcomes Improvement Core lists: Chicago Center for Diabetes Translation Research Quantitative Analysis Core lists: Chicago Center for Diabetes Translation Research lists: Cincinnati Digestive Health Center Clinical Component-Data Analysis and Management lists: Cincinnati Children's Hospital Digestive Health Center lists: Cincinnati Digestive Health Center Integrative Morphology lists: Cincinnati Digestive Health Center Pluripotent Stem Cell and Organoid Core lists: Cincinnati Digestive Health Center lists: Cleveland Digestive Diseases Research Core Center lists: Cleveland Digestive Diseases Research Core Facilities lists: Columbia Diabetes Research Center Advanced Tissue Pathology and Imaging Core Facility lists: Columbia Diabetes Research Center Flow Cytometry and Cell Sorting Core Facility lists: Columbia Diabetes Research Center Mouse Metabolic Function and Phenotyping Core Facility lists: Columbia Diabetes Research Center lists: Columbia Diabetes Research Center Translational Biomarker Analytical Core Facility lists: Columbia University George M. O'Brien Urology Center lists: CURE - Digestive Diseases Research Center Administrative Core lists: CURE - Digestive Diseases Research Center Animal Models Core lists: CURE - Digestive Diseases Research Center Human Studies Core lists: CURE - Digestive Diseases Research Center Molecular Biology and Peptidomics Core lists: CURE - Digestive Diseases Research Center Morphology and Imaging Core lists: CURE - Digestive Diseases Research Center lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Clinical Translational Core lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Histology Core lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Michael Hooker Microscopy Core Facility lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Molecular Biology Core lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Mouse Models Core lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Mucus and Mucin Biochemistry and Biophysics Core lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Pre-Clinical Core lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Tissue Procurement and Cell Culture Core lists: Cystic Fibrosis Center - University of California San Francisco lists: Cystic Fibrosis Center University of Pittsburgh lists: Cystic Fibrosis Center - University of Washington Administrative and Enrichment Core lists: Cystic Fibrosis Center - University of Washington Clinical Core lists: University of Washington Genomics Core Cystic Fibrosis Research Translation Center and Research Development Program lists: Cystic Fibrosis Center - University of Washington Host Response Core lists: Cystic Fibrosis Center - University of Washington Microbiology Core lists: Cystic Fibrosis Center - University of Washington lists: Cystic Fibrosis Research and Translation Centers lists: Digestive Disease Centers lists: Duke O'Brien Center for Kidney Research Animal Models Core lists: Duke O'Brien Center for Kidney Research Clinical and Translational Core lists: Duke O'Brien Center for Kidney Research Renal Genomics Core lists: Duke O'Brien Center for Kidney Research lists: Einstein-Mount Sinai Diabetes Research Center Animal Physiology Core Facility lists: Einstein-Mount Sinai Diabetes Research Center Biomarker Analytic Research Core Facility lists: Einstein-Mount Sinai Diabetes Research Center Human Islet and Adenovirus Core Facility lists: Einstein-Mount Sinai Diabetes Research Center lists: Einstein-Mount Sinai Diabetes Research Center Stable Isotope and Metabolomics Core Facility lists: Einstein-Mount Sinai Diabetes Research Center Translational Research Core Facility lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Antibody Technology lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Arnold Library lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Comparative Medicine lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Electron Microscopy lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Experimental Histopathology Shared Resource lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Flow Cytometry lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Genomics Shared Resource lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Glassware Services lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Proteomics Resource lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Research Freezers and Sample Storage Resource lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Scientific Imaging lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Specimen Processing/Research Cell Bank lists: George M. O'Brien Kidney Center at Yale Human Genetics and Clinical Research Core lists: George M. O'Brien Kidney Center at Yale Mouse Genetics and Cell Line Core lists: George M. O'Brien Kidney Center at Yale Renal Physiology Core lists: George M. O'Brien Kidney Center at Yale lists: George M. O'Brien Kidney Research Core Center - UT Southwestern Medical Center Animal Models Core lists: George M. O'Brien Kidney Research Core Center - UT Southwestern Medical Center Cell Biology and Imaging Core lists: George M. O'Brien Kidney Research Core Center - UT Southwestern Medical Center Clinical and Translational Core lists: George M. O'Brien Kidney Research Core Center - UT Southwestern Medical Center Physiology Core lists: George M. O'Brien Kidney Research Core Center - UT Southwestern Medical Center lists: Georgia Center for Diabetes Translation Research Design and Evaluation Core Facility lists: Georgia Center for Diabetes Translation Research Disparities Core lists: Georgia Center for Diabetes Translation Research Engagement and Behavior Change Core lists: Georgia Center for Diabetes Translation Research lists: Gregory Fleming James Cystic Fibrosis Research Center Assay Core lists: Gregory Fleming James Cystic Fibrosis Research Center Cell Model and Evaluation Core lists: Gregory Fleming James Cystic Fibrosis Research Center Cystic Fibrosis Animal Models Core lists: Gregory Fleming James Cystic Fibrosis Research Center Cystic Fibrosis Clinical and Translational Core lists: Gregory Fleming James Cystic Fibrosis Research Center Cystic Fibrosis Transmembrane Conductance Regulator Expression Core lists: Gregory Fleming James Cystic Fibrosis Research Center lists: Health Delivery Systems Center for Diabetes Translational Research California State Resource Program lists: Health Delivery Systems Center for Diabetes Translational Research Diabetes and Obesity Prevention Core lists: Health Delivery Systems Center for Diabetes Translational Research Health Disparities Core lists: Health Delivery Systems Center for Diabetes Translational Research Health Information Technology Core lists: Health Delivery Systems Center for Diabetes Translational Research lists: Hematology Centers lists: Indiana University School of Medicine Center for Diabetes and Metabolic Diseases Islet and Physiology Core Facility lists: Indiana Diabetes Research Center Microscopy Core Facility lists: Indiana Diabetes Research Center lists: Indiana Diabetes Research Center Swine Core lists: Indiana Diabetes Research Center Translation Core Facility lists: Indiana O'Brien Center for Advanced Microscopic Analysis Administration Core lists: Indiana O'Brien Center for Advanced Microscopic Analysis Biosensor Development Core lists: Indiana O'Brien Center for Advanced Microscopic Analysis Digital Image Analysis Core lists: Indiana O'Brien Center for Advanced Microscopic Analysis Education Core lists: Indiana O'Brien Center for Advanced Microscopic Analysis Intravital Microscopy Core lists: Indiana O'Brien Center for Advanced Microscopic Analysis Probe Delivery Core lists: Indiana O'Brien Center for Advanced Microscopic Analysis lists: Indiana University Cooperative Center of Excellence in Hematology Angiogenesis Core lists: Indiana University Cooperative Center of Excellence in Hematology Experimental Mouse Resources Core lists: Indiana University School of Medicine Flow Cytometry Core Facility lists: Indiana University Cooperative Center of Excellence in Hematology Optical Microscopy Core lists: Indiana University Cooperative Center of Excellence in Hematology lists: Johns Hopkins University - University of Maryland Diabetes Research Center Administrative Core lists: Johns Hopkins University - University of Maryland Diabetes Research Center Cell Biology Core lists: Johns Hopkins University - University of Maryland Diabetes Research Center Gene Editing Core lists: Johns Hopkins University - University of Maryland Diabetes Research Center Health and Populations Science Core lists: Johns Hopkins University - University of Maryland Diabetes Research Center Integrated Physiology Core lists: Johns Hopkins University - University of Maryland Diabetes Research Center Molecular and Translational Genomics Core lists: Johns Hopkins University - University of Maryland Diabetes Research Center lists: Joslin Diabetes Center Advanced Genomics and Genetics Core Facility lists: Joslin Diabetes Center Advanced Microscopy Core Facility lists: Joslin Diabetes Center Animal Physiology Core Facility lists: Joslin Diabetes Center Bioinformatics and Biostatistics Core lists: Joslin Diabetes Center Enrichment Core lists: Joslin Diabetes Center Flow Cytometry Core Facility lists: Joslin Diabetes Center Induced Pluripotent Stem Cell Core lists: Joslin Diabetes Center lists: Marion Bessin Liver Research Center Animal Models Stem Cells and Cell Therapy lists: Marion Bessin Liver Research Center Genetic Engineering and Gene Therapy lists: Marion Bessin Liver Research Center Imaging and Cell Structure lists: Marion Bessin Liver Research Center lists: Mayo Clinic Center for Cell Signaling in Gastroenterology Clinical Core lists: Mayo Clinic Center for Cell Signaling in Gastroenterology Gene Editing and Cell Engineering Core lists: Mayo Clinic Center for Cell Signaling in Gastroenterology Optical Microscopy Core lists: Mayo Clinic Center for Cell Signaling in Gastroenterology lists: Mayo Clinic O'Brien Urology Center Biostatistics and Epidemiology Core lists: Mayo Clinic O'Brien Urology Center Imaging Core lists: Mayo Clinic O'Brien Urology Center lists: Mayo Clinic O'Brien Urology Center Urine Phenotyping Core lists: Michigan Center for Diabetes Translational Research Administrative Core Facility lists: Michigan Center for Diabetes Translational Research Intervention and Technology Research Core lists: Michigan Center for Diabetes Translational Research Leveraging Community, Peer, and Family Support Core Facility lists: Michigan Center for Diabetes Translational Research Methods and Measurements Core lists: Michigan Diabetes Research Center Animal Studies Core lists: Michigan Diabetes Research Center Clinical Core Facility lists: Michigan Diabetes Research Center Microscopy and Image Analysis Core Facility lists: Michigan Diabetes Research Center Molecular Genetics Core Facility lists: Michigan Diabetes Research Center OMICS Core lists: Michigan Diabetes Research Center lists: Mid-Atlantic Nutrition Obesity Research Center Biological Mechanisms and Functional Genomics Core lists: Mid-Atlantic Nutrition Obesity Research Center Biostatistics and Medical Informatics Subcore lists: Mid-Atlantic Nutrition Obesity Research Center Clinical and Translational Research Core lists: Mid-Atlantic Nutrition Obesity Research Center Molecular Genetics and Nutrigenomics Core lists: Mid-Atlantic Nutrition Obesity Research Center lists: MMPC-University of California Davis Administrative Core lists: MMPC-University of California Davis Animal Care Surgery and Pathology Core lists: MMPC-University of California Davis Endocrinology and Metabolism Core lists: MMPC-University of California Davis Energy Balance Exercise and Behavior Core lists: MMPC-University of California Davis Microbiome and Host Response Core lists: MMPC-University of California Davis lists: MMPC-University of Cincinnati Medical Center Cardiovascular and Renal Function Core lists: MMPC-University of Cincinnati Medical Center Energy Metabolism Food Intake and Body Weight Regulation Core lists: MMPC-University of Cincinnati Medical Center Lipid Lipoprotein and Glucose Metabolism Core lists: MMPC-University of Cincinnati Medical Center lists: MMPC-University of Massachusetts Medical School Analytical Core lists: MMPC-University of Massachusetts Medical School Animal Care Core lists: MMPC-University of Massachusetts Medical School Cardiovascular Core lists: MMPC-University of Massachusetts Medical School Humanized Mouse Cell Transplantation and Assessment Core lists: MMPC-University of Massachusetts Medical School Islet Core lists: MMPC-University of Massachusetts Medical School Metabolism Core lists: University of Massachusetts Medical School Metabolic Disease Research Center Core Facility lists: MMPC-University of Michigan Medical School Animal Care and Germ-Free Mouse Core lists: MMPC-University of Michigan Medical School Metabolism Bariatric Surgery and Behavior Core lists: MMPC-University of Michigan Medical School Microbiome Core lists: MMPC-University of Michigan Medical School Microvascular Complications Core lists: MMPC-University of Michigan Medical School lists: MMPC-Vanderbilt University School of Medicine Analytical Resources Core lists: MMPC-Vanderbilt University School of Medicine Animal Health and Welfare Core lists: MMPC-Vanderbilt University School of Medicine Cardiovascular Pathophysiology Core lists: MMPC-Vanderbilt University School of Medicine Metabolic Regulation Core lists: MMPC-Vanderbilt University School of Medicine lists: Molecular Biology and Next Generation Technology lists: Mucosal HIV and Immunobiology Center Genetically-Defined Microbe Core lists: Mucosal HIV and Immunobiology Center Gnotobiotic and Genetically-Engineered Mouse Core lists: Mucosal HIV and Immunobiology Center Molecular Pathology and Human Cell and Tissue Core lists: Mucosal HIV and Immunobiology Center lists: New York Obesity Nutrition Research Center Animal Phenotyping Core lists: New York Obesity Nutrition Research Center Human Phenotyping Core lists: New York Obesity Nutrition Research Center lists: New York Regional Center for Diabetes Translation Research Latino Network for Diabetes Translational Research lists: New York Regional Center for Diabetes Translation Research Life Course Methodology Core lists: New York Regional Center for Diabetes Translation Research Population Health and Health Systems Core lists: New York Regional Center for Diabetes Translation Research lists: New York Regional Center for Diabetes Translation Research Translational Intervention Methodology Core lists: Nutrition and Obesity Research Centers at Harvard Administrative Core lists: Nutrition and Obesity Research Centers at Harvard Genomics and Cell Biology Core lists: Nutrition and Obesity Research Centers at Harvard Metabolic Imaging Core lists: Nutrition and Obesity Research Centers at Harvard Metabolic Phenotyping Core lists: Nutrition and Obesity Research Centers at Harvard lists: Nutrition and Obesity Research Centers at Harvard Statistical Consultation lists: O'Brien Center for Benign Urologic Research at University of Wisconsin-Madision and University of Massachusetts-Boston Rodent Urinary Function Testing Core lists: O'Brien Center for Benign Urologic Research at University of Wisconsin-Madision and University of Massachusetts-Boston lists: O'Brien Kidney Centers lists: O'Brien Urology Centers lists: Pediatric Centers of Excellence in Nephrology at Cincinnati Children's Hospital Medical Center Biomarker Core lists: Pediatric Centers of Excellence in Nephrology at Cincinnati Children's Hospital Medical Center Gene Expression Core lists: Cincinnati Children's Hospital Pediatric Center of Excellence lists: Pediatric Centers of Excellence in Nephrology at Cincinnati Children's Hospital Medical Center lists: Pediatric Centers of Excellence in Nephrology at Duke Division of Pediatric Nephrology lists: Pediatric Centers of Excellence in Nephrology at University of Virginia lists: Penn Diabetes Research Center Functional Genomics Core lists: Penn Diabetes Research Center Metabolomics Core lists: Penn Diabetes Research Center Mouse Phenotyping Physiology and Metabolism Core lists: University of Pennsylvania School of Medicine Penn Diabetes Research Center Pancreatic Islet Cell Biology Core Facility lists: Penn Diabetes Research Center Radioimmunoassay and Biomarkers Core Facility lists: Penn Diabetes Research Center lists: Penn Diabetes Research Center Transgenic and Chimeric Mouse Core Facility lists: Louisiana State University Pennington Biomedical Nutrition Obesity Research Center Core Facility lists: Pennington Biomedical Research Center Nutrition and Obesity Research Center Animal Models and Phenotyping Core lists: Pennington Biomedical Research Center Nutrition and Obesity Research Center Human Phenotyping Core lists: Pennington Biomedical Research Center Nutrition and Obesity Research Center Molecular Mechanisms Core lists: Pennington Biomedical Research Center Nutrition and Obesity Research Center lists: Pittsburgh Center for Kidney Research Biostatistical Analysis Services lists: Pittsburgh Center for Kidney Research Cellular Physiology lists: Pittsburgh Center for Kidney Research Kidney Imaging lists: Pittsburgh Center for Kidney Research Model Organisms lists: Pittsburgh Center for Kidney Research lists: Pittsburgh Center for Kidney Research Single Nephron and Metabolomics lists: Polycystic Kidney Disease Research and Translation Centers lists: Texas Medical Center Digestive Diseases Center Administrative Core lists: Texas Medical Center Digestive Diseases Center Cellular and Molecular Morphology Core lists: Texas Medical Center Digestive Diseases Center Functional Genomics and Microbiome lists: Texas Medical Center Digestive Diseases Center Integrative Biology Core lists: Texas Medical Center Digestive Diseases Center lists: Texas Medical Center Digestive Diseases Center Study Design and Clinical Research Core Services lists: Translational Polycystic Kidney Disease (PKD) Center at Mayo Clinic Rochester Human Imaging Core lists: Translational Polycystic Kidney Disease (PKD) Center at Mayo Clinic Rochester Model Systems Core lists: Translational Polycystic Kidney Disease (PKD) Center at Mayo Clinic Rochester Molecular Genetics and Biomarker Core lists: Translational Polycystic Kidney Disease (PKD) Center at Mayo Clinic Rochester lists: UAB Hepatorenal Fibrocystic Diseases Core Center Cellular Physiology Resource lists: UAB Hepatorenal Fibrocystic Diseases Core Center Engineered Models Resource lists: UAB Hepatorenal Fibrocystic Diseases Core Center Hepato-Renal Fibrocystic Diseases Translational Resource lists: UAB Hepatorenal Fibrocystic Diseases Core Center lists: UAB Hepatorenal Fibrocystic Diseases Core Center Therapeutic Screening and Drug Development Resource lists: UAB-UCSD Core Center for Acute Kidney Injury Research Administrative Core lists: UAB-UCSD Core Center for Acute Kidney Injury Research Bioanalytical Core lists: University of Alabama at Birmingham-University of California San Diego O'Brien Center for Acute Kidney Injury Research Biostatistical Core lists: UAB-UCSD Core Center for Acute Kidney Injury Research Clinical Studies of AKI lists: UAB-UCSD Core Center for Acute Kidney Injury Research Pre-Clinical Studies of AKI lists: UAB-UCSD Core Center for Acute Kidney Injury Research lists: University of Alabama at Birmingham Diabetes Research Center Administrative Core Facility lists: University of Alabama at Birmingham Diabetes Research Center Animal Physiology Core Facility lists: University of Alabama at Birmingham Diabetes Research Center Bioanalytical REDOX Biology Core Facility lists: University of Alabama at Birmingham Diabetes Research Center Human Physiology Core Facility lists: University of Alabama at Birmingham Diabetes Research Center Interventions and Translation Core lists: University of Alabama at Birmingham Diabetes Research Center lists: University of Alabama at Birmingham Nutrition and Obesity Research Center Animal Models Core lists: University of Alabama at Birmingham Nutrition and Obesity Research Center Biostatistics Core lists: University of Alabama at Birmingham Nutrition and Obesity Research Center Metabolism Core lists: University of Alabama at Birmingham Nutrition and Obesity Research Center Physical Activity Core lists: University of Alabama at Birmingham Nutrition and Obesity Research Center lists: University of California San Diego - University of California Los Angeles Diabetes Research Center Genomics and Epigenetics Core Facility lists: University of California San Diego - University of California Los Angeles Diabetes Research Center Human Genetics Core Facility lists: University of California San Diego - University of California Los Angeles Diabetes Research Center Metabolic and Molecular Physiology Core Facility lists: University of California San Diego - University of California Los Angeles Diabetes Research Center lists: University of California San Diego - University of California Los Angeles Diabetes Research Center Targeted Pathway Analysis Core Facility lists: University of California San Diego - University of California Los Angeles Diabetes Research Center Transgenic and Knockout Mouse Core Facility lists: University of California San Francisco Parnassus Flow Cytometry Core Facility lists: University of California San Francisco Diabetes Research Center Lentiviral RNAi Core Facility lists: University of California San Francisco Diabetes Research Center Microscopy Core Facility lists: University of California San Francisco Diabetes Research Center Mouse Genetics Core Facility lists: University of California San Francisco Diabetes Research Center Mouse Metabolism Core lists: University of California San Francisco Diabetes Research Center lists: University of California San Francisco Nutrition and Obesity Research Center Genetics and Genomics Core lists: University of California San Francisco Nutrition and Obesity Research Center Human Metabolism Core lists: University of California San Francisco Nutrition and Obesity Research Center Mouse Metabolism and Imaging Core lists: University of California San Francisco Nutrition and Obesity Research Center lists: University of Chicago Diabetes Research and Training Center Administrative Core lists: University of Chicago Diabetes Research and Training Center Animal Models and Physiology Core lists: University of Chicago Diabetes Research and Training Center Islet Cell Biology Core lists: University of Chicago Diabetes Research and Training Center Molecular Biology and Genetics Core Laboratory lists: University of Chicago Diabetes Research and Training Center lists: University of Colorado Anschutz Medical Campus Nutrition and Obesity Research Center lists: University of Iowa Center for Gene Therapy Cell Tissue Core lists: University of Iowa Center for Gene Therapy Clinical Core lists: University of Iowa Center for Gene Therapy Comparative Pathology Core lists: University of Iowa Center for Gene Therapy lists: University of Iowa Center for Gene Therapy Vectore Core lists: University of Michigan Nutrition and Obesity Research Center Administrative Core lists: University of Michigan Nutrition and Obesity Research Center Animal Phenotyping Core lists: University of Michigan Nutrition and Obesity Research Center Human Phenotyping Core lists: University of Michigan Nutrition and Obesity Research Center Integrative Biostatistics and Informatics Core lists: University of Michigan Nutrition and Obesity Research Center Molecular Phenotyping Core lists: University of Michigan Nutrition and Obesity Research Center lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Administrative Core lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Animal Metabolism Phenotyping Core lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Biostatistics Program lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Clinical Nutrition Research Facilitation Program lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Communication for Health Applications and Interventions Core lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Diet and Physical Activity Core lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Metabolic Molecular Phenotyping Core lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Nutrigenetics Core lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Research Facilitation Program lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center lists: University of Pennsylvania Center for Molecular Therapy for Cystic Fibrosis Cell Morphology Core lists: University of Pennsylvania Center for Molecular Therapy for Cystic Fibrosis Immunology Core lists: University of Pennsylvania Center for Molecular Therapy for Cystic Fibrosis lists: University of Pennsylvania Center for Molecular Therapy for Cystic Fibrosis Vector Core Facility lists: University of Washington Diabetes Research Center Administrative Core lists: University of Washington Diabetes Research Center Cell Function Analysis Core Facility lists: University of Washington Diabetes Research Center Cellular and Molecular Imaging Core lists: University of Washington Diabetes Research Center Human Studies Core Facility lists: University of Washington Diabetes Research Center Quantitative and Functional Proteomics Core Facility lists: University of Washington Diabetes Research Center lists: University of Washington Diabetes Research Center Vector and Transgenic Mouse Core lists: Vanderbilt Diabetes Research and Training Center Cell Imaging Shared Resource Core Facility lists: Vanderbilt Diabetes Research and Training Center Hormone Assay and Analytical Services Core Facility lists: Vanderbilt Diabetes Research and Training Center Islet Procurement and Analysis Core lists: Vanderbilt Diabetes Research and Training Center Metabolic Physiology Shared Resource lists: Vanderbilt Diabetes Research and Training Center lists: Vanderbilt Diabetes Research and Training Center Transgenic Mouse and ES Cell Shared Resource lists: Vanderbilt Diabetes Research and Training Center Vanderbilt Diet Body Composition and Metabolism Core Facility lists: Vanderbilt Digestive Disease Research Center Bioanalytical Mass Spectrometry and Proteomics Core lists: Vanderbilt Digestive Disease Research Center Cellular Imaging Core lists: Vanderbilt Digestive Disease Research Center Flow Cytometry Core lists: Vanderbilt Digestive Disease Research Center lists: University of Washington Nutrition and Obesity Research Center Adipose Tissue and Obesity Core lists: University of Washington Nutrition and Obesity Research Center Administrative and Enrichment Core lists: University of Washington Nutrition and Obesity Research Center Analytic Core lists: University of Washington Nutrition and Obesity Research Center Energy Balance Core lists: Washington University Center for Diabetes Translation Research Administrative Core in Diabetes Research Core lists: University of Washington Nutrition and Obesity Research Center lists: Washington University Center for Diabetes Translation Research Dissemination and Implementation in Diabetes Research Core Facility lists: Washington University Center for Diabetes Translation Research Health Communication and Health Literacy Core Facility lists: Washington University Center for Diabetes Translation Research Health Informatics in Diabetes Research Core lists: USC Liver Transplant Program and Center for Liver Disease Analytical Metabolic Instrumentation Core lists: Washington University Center for Diabetes Translation Research Policy and Systems Science Analysis in Diabetes Research Core lists: USC Liver Transplant Program and Center for Liver Disease Cell and Tissue Imaging Core lists: Washington University Center for Diabetes Translation Research Research Partnerships with American Indian/Alaskan Native Communities Core lists: Washington University Center for Diabetes Translation Research lists: USC Liver Transplant Program and Center for Liver Disease Cell Separation and Culture Core lists: Washington University Center for Diabetes Translation Research Solutions to Diabetes in Black Americans Core lists: Washington University Digestive Diseases Research Core Center Administrative and Resource Access Core lists: USC Liver Transplant Program and Center for Liver Disease Liver Histology Core lists: USC Liver Transplant Program and Center for Liver Disease lists: Vanderbilt Center for Diabetes Translation Research Administrative Core lists: Vanderbilt Center for Diabetes Translation Research Behavioral Intervention Technologies and Services Core lists: Vanderbilt Center for Diabetes Translation Research Community Engagement Core lists: Vanderbilt Center for Diabetes Translation Research Community Outreach and Heath Disparities Core lists: Vanderbilt Center for Diabetes Translation Research lists: Washington University Digestive Diseases Research Core Center Advanced Imaging and Tissue Analysis Core lists: Vanderbilt Center for Diabetes Translation Research Translation Methods Core lists: Washington University Digestive Diseases Research Core Center Biobank Core lists: Yale Liver Center lists: Washington University Digestive Diseases Research Core Center Murine Models and Gnotobiotics Core lists: Yale Liver Center Morphology Core lists: Washington University Digestive Diseases Research Core Center lists: Yale Liver Center Clinical and Translational Core lists: Washington University School of Medicine Diabetes Research Center Cell and Tissue Imaging Core lists: Yale Liver Center Cellular and Molecular Physiology Core lists: Washington University School of Medicine Diabetes Research Center Diabetes Models Phenotyping Core Facility lists: Yale Liver Center Administrative Core lists: Washington University School of Medicine Diabetes Research Center Translational Diagnostics Core lists: Yale Diabetes Research Center lists: Washington University School of Medicine Diabetes Research Center Immunology of Type 1 Diabetes Core lists: Yale Diabetes Research Center Physiology Core Facility lists: Washington University School of Medicine Diabetes Research Center Mass Spectrometry Core lists: Yale Diabetes Research Center Molecular Genetics Core lists: Yale Diabetes Research Center Molecular Core Facility lists: Washington University School of Medicine Diabetes Research Center Morphology and Metabolic Analysis Core lists: Yale Diabetes Research Center Diabetes Translational Core Facility lists: Washington University School of Medicine Diabetes Research Center lists: Washington University School of Medicine Diabetes Research Center Transgenic and ES Cell Core lists: Yale Diabetes Research Center Clinical Metabolism Core Facility lists: Yale Diabetes Research Center Cell Biology Core Facility lists: Washington University St. Louis Nutrition Obesity Research Center lists: Yale Diabetes Research Center Administrative Core Facility lists: Yale Cooperative Center of Excellence in Hematology Animal Modeling Core lists: Yale Cooperative Center of Excellence in Hematology lists: Yale Cooperative Center of Excellence in Hematology Cell Preparation and Analysis Core lists: Yale Cooperative Center of Excellence in Hematology Imaging Core lists: Harvard Digestive Disease Center lists: Harvard Digestive Diseases Center Biomedical CORE B: Microscopy and Histopathology lists: Harvard Digestive Diseases Center Biomedical CORE C: Epithelial Cell and Mucosal Immunology lists: Harvard Digestive Diseases Center Biomedical CORE D: Gnotobiotic Mice, Microbiology and Metagenomics lists: Harvard Digestive Diseases Center Clinical Translational Research Program lists: Harvard Digestive Diseases Center Bio-Repository and Data Registry for Human Material lists: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center lists: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center Integrated Physiology Core lists: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center Image Core lists: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center Proteomics Core lists: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center Translational Research Enhancement Core lists: UCSF Liver Center lists: UCSF Liver Center Cell Biology Core lists: UCSF Liver Center Clinical & Translational Core lists: UCSF Liver Center Immunology Core lists: UCSF Liver Center Pathology & Imaging Core lists: University of Chicago Digestive Diseases Research Core Center lists: University of Chicago Digestive Diseases Research Core Center Integrated Translational Research Core lists: University of Chicago Digestive Diseases Research Core Center Administrative Core lists: University of Chicago Digestive Diseases Research Core Center Tissue Engineering and Cell Models Core lists: University of Chicago Digestive Diseases Research Core Center Host-Microbe Core lists: University of Chicago Digestive Diseases Research Core Center Tissue and Cell Imaging Core lists: University of Michigan Center for Gastrointestinal Research lists: University of Michigan Center for Gastrointestinal Research Protein Localization, Identification and Folding Core lists: University of Michigan Center for Gastrointestinal Research In Vivo Animal and Human Studies Core lists: University of Michigan Center for Gastrointestinal Research Molecular Biology Core lists: University of Michigan Center for Gastrointestinal Research Microbiome and Metabolomics Core lists: University of North Carolina Center for Gastrointestinal Biology and Disease lists: University of North Carolina Center for Gastrointestinal Biology and Disease Advanced Analytics Core lists: University of North Carolina Center for Gastrointestinal Biology and Disease Biostatistics and Data Management Core lists: University of North Carolina Center for Gastrointestinal Biology and Disease Gnotobiotic Core lists: University of North Carolina Center for Gastrointestinal Biology and Disease Histology Core lists: University of North Carolina Center for Gastrointestinal Biology and Disease Large Animal Models Core lists: University of North Carolina Center for Gastrointestinal Biology and Disease Microbiome Core lists: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases lists: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Molecular Pathology and Imaging Core lists: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Host-Microbial Analytic and Repository Core lists: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Genetically-Modified Mouse Core lists: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Cell Culture Core lists: Joslin Diabetes Center Molecular Phenotyping and Genotyping Core lists: University of Pennsylvania Diabetes Research Center lists: Preventing Early Renal Loss in Diabetes (PERL) lists: Clinical Trials in Organ Transplantation in Children (CTOT-C) lists: Clinical Trials in Organ Transplantation (CTOT) lists: Stanford Diabetes Research Center lists: Monogenic Diabetes Registry lists: Chronic Prostatitis Collaborative Research Network Clinical Trial- Alfuzosin lists: National Glycohemoglobin Standardization Program lists: MetaCyto lists: JOINSOLVER lists: HASP lists: NetCirChro lists: Simmune lists: ABC Bacterial Transporter Systems Database lists: Kidney Precision Medicine Project lists: ValIdated Systematic IntegratiON of epigenomic data lists: The Human BioMolecular Atlas Program lists: Prevention of Lower Urinary Tract Symptoms lists: Illuminating the Druggable Genome lists: 4D Nucleome lists: immuneXpresso lists: Multi-Disciplinary Approach to the Study of Chronic Pelvic Pain lists: Secrepedia lists: MoTrPAC Data Hub lists: Human Cell Atlas lists: PANC-DB lists: Rare and Atypical Diabetes Network lists: Diabetes Control and Complications Trial lists: Diabetes Data and Hypothesis Hub lists: Common Metabolic Diseases Knowledge Portal lists: Type 1 Diabetes Knowledge Portal lists: Sleep Disorder Knowledge Portal lists: Cardiovascular Disease Knowledge Portal lists: Cerebrovascular Disease Knowledge Portal lists: Trans-Omics for Precision Medicine (TOPMed) Program lists: All of Us lists: AI-READI is listed by: NIH Data Sharing Repositories is listed by: NIDDK Research Resources is listed by: Collaborating for the Advancement of Interdisciplinary Research in Benign Urology is related to: MTOPS Prostate Samples Analysis Consortium is related to: Neuroscience Information Framework is related to: Diabetes Disease Portal is related to: Kidney and Urinary Pathway Knowledge Base is related to: dbMHC is related to: Islet Cell Resource Centers is related to: DGAP is related to: Nuclear Receptor Resource is related to: dkCOIN is related to: Human Biological Data Interchange is related to: National Gene Vector Biorepository is related to: Creatinine Standardization Program is related to: Glomerular Filtration Rate Calculators is related to: Congressionally Directed Medical Research Program is related to: National Kidney Disease Education Program is related to: Network of Minority Health Research Investigators is related to: National Endocrine and Metabolic Diseases Information Service is related to: Kidney and Urinary Pathway Ontology is related to: National Diabetes Information Clearinghouse is related to: Digestive Diseases Statistics for the United States is related to: Diabetes in America is related to: National Digestive Diseases Information Clearinghouse is related to: Diabetes Control and Complications Trial is related to: National Hematologic Diseases Information Service is related to: National Kidney and Urologic Diseases Information Clearinghouse is related to: Nonhuman Primate Transplantation Tolerance Cooperative Study Group is related to: Type 1 Diabetes Preclinical Testing Program is related to: Diabetes Autoantibody Standardization Program is related to: AASK Clinical Trial and Cohort Study is related to: Maryland Genetics of Interstitial Cystitis is related to: Frequent Hemodialysis Network Nocturnal Trial is related to: Mammalian Gene Collection is related to: Zebrafish Gene Collection is related to: Boston Area Community Health Survey is related to: Minimally Invasive Surgical Therapies Treatment Consortium for Benign Prostatic Hyperplasia is related to: Focal Segmental Glomerulosclerosis in Children and Young Adults Interventional Study is related to: Complementary and Alternative Medicine for Urological Symptoms is related to: Mouse Mutagenesis Center for Developmental Defects is related to: CARDS Database is related to: ACCORD is related to: Program to Reduce Incontinence by Diet and Exercise is related to: Renal Disease Portal is related to: Renin Angiotensin System Study is related to: NIH Data Sharing Repositories is related to: Kidney Development Database is related to: GenePaint Interactive Anatomy Atlas is related to: EMAGE Gene Expression Database is related to: Gene Expression Omnibus is related to: MGnify is related to: FAIR Data Informatics Laboratory is related to: Type 1 Diabetes Knowledge Portal is related to: Polycystic Kidney Disease Research Resource Consortium has parent organization: SciCrunch has parent organization: University of California at San Diego; California; USA
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Digestive disease, Kidney disease, Diabetes, Metabolic disease, Endocrine disease, Obesity, Urologic disease, Type 1 diabetes, Type 2 diabetes |
NIDDK U24 DK097771 |
PMID:26393351 |
Free, Freely available |
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nlx_153866, r3d100012845 |
http://scicrunch.org/dknet, https://doi.org/10.17616/R31NJMEL |
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SCR_001606 |
National Institute of Diabetes and Digestive and Kidney Disease Information Network, NIDDK Information Network, DKnet, NIDDKInformation Network |
2026-08-21 12:36:26 |
21 |
GlyProt
Resource Report
Resource Website
10+ mentions
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GlyProt (RRID:SCR_001560)
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GlyProt
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analysis service resource, data analysis service, production service resource, service resource
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Web-based tool that enables meaningful N-glycan conformations to be attached to all the spatially accessible potential N-glycosylation sites of a known three-dimensional (3D) protein structure. The 3D structure of protein is required as input. Potential N-glysylations site are automatically detected. The attached glycan are constructed with SWEET-II, http://www.glycosciences.de/modeling/sweet2/doc/index.php
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glycosylation, protein, in silico, 3d structure, protein structure, glycan, n-glycan, glycoprotein, bio.tools
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is listed by: bio.tools is listed by: Debian is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is related to: SWEET-DB has parent organization: glycosciences.de
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DFG |
PMID:15980456 |
THIS RESOURCE IS NO LONGER IN SERVICE |
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biotools:glyprot, nlx_152875 |
https://bio.tools/glyprot |
http://www.glycosciences.de/glyprot/ |
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SCR_001560 |
GlyProt - In Silico Glycosylation of Proteins |
2026-08-21 12:36:25 |
39 |
SynSysNet
Resource Report
Resource Website
1+ mentions
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SynSysNet (RRID:SCR_003180)
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SynSysNet
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data or information resource, database
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THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 19,2025. A curated database for synaptic proteins that provides adequate definitions of pre- and post-synaptic proteins, proteins present in sub-domains of the synapse, e.g. the synaptic vesicle and associated proteins, lipid rafts and postsynaptic density. In addition to data that was and will be gathered from the experiments conducted within SynSys - A European expertise Network on building the synapse, they have extracted and manually curated all relevant data on these proteins from other sources and provided an ontology for these. Novel splice forms are being identified that can be matched with proteomics data. Information on proteins, their 3D structure, binding small molecules Protein-Protein-Interactions (PPIs) and Compound-Protein-Interactions are integrated. Proteins or compounds can be searched and Interactive Networks can be visualized. The point Diseases present neurological diseases, to illustrate the role of SynSysNet in the medication.
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gene, synapse, protein, interaction, compound, disease, structure, model, compound, protein-drug interaction, protein-protein interaction, pathway, drug-target, small molecule, interaction network, homology, drug, drug-target interaction, compound-protein interaction, visualization, proteomics, network
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is listed by: OMICtools is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is related to: KEGG has parent organization: Charite - Universitatsmedizin Berlin; Berlin; Germany
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Huntington's disease, Chorea Huntington, Epilepsy, Multiple Sclerosis, Parkinson's disease, Schizophrenia, Neurological disease |
European Union Seventh FPSYNSYS 242167; DFG GRK1772; DFG GRK1360 |
PMID:23143269 |
THIS RESOURCE IS NO LONGER IN SERVICE |
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nlx_156893, OMICS_01914 |
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SCR_003180 |
SynSysNet - Synaptic Proteins Database |
2026-08-21 12:37:02 |
3 |
NCBI Protein Database
Resource Report
Resource Website
1000+ mentions
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NCBI Protein Database (RRID:SCR_003257)
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NCBI_GP, NCBI Protein, NCBI GP
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data or information resource, database
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Databases of protein sequences and 3D structures of proteins. Collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.
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amino acid sequence, nucleotide, dna sequence, protein, sequence, sequence data, structure, function, dna, nucleotide sequence, genomics, protein binding, gold standard
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is used by: NIF Data Federation is listed by: re3data.org is related to: AmiGO is related to: GenBank is related to: RefSeq is related to: TPA is related to: UniProtKB is related to: Protein Information Resource is related to: Protein Research Foundation is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is related to: BioExtract is related to: DIG IT - Database of Immunoglobulins and Integrated Tools has parent organization: NCBI
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Free, Freely available |
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SCR_017486, r3d100011331, nif-0000-03178 |
http://www.ncbi.nlm.nih.gov/sites/entrez?db=protein, https://doi.org/10.17616/R3JH0X |
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SCR_003257 |
Entrez Protein, Protein Database, NCBI Protein Database, Protein sequence database, Entrez Protein Database |
2026-08-21 12:36:57 |
1025 |