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eagle-i research resource ontology Resource Report Resource Website 1+ mentions	eagle-i research resource ontology (RRID:SCR_008784)	ERO	controlled vocabulary, data or information resource, data repository, database, ontology, service resource, software application, software resource, source code, storage service resource	Ontology that models research resources such as instruments, protocols, reagents, animal models and biospecimens. It has been developed in the context of the eagle-i project (http://eagle-i.net/) and consists of over 3451 classes of which over 1200 were created within the ERO namespace, while the rest come from existent ontologies such as the Ontology for Biomedical Investigation (OBI), the uber-anatomy ontology (Uberon), VIVO, the Ontology for Clinical Research (OCRe), the Sequence Ontology (SO), the Software Ontology (SWO) and we include terms from the NCBI Taxonomy as well. The main ontology can be browsed in OntoBee. All purls resolve to OntoBee.	research, resource, biomedical, owl	is listed by: BioPortal is related to: Ontobee is related to: CTSA ShareCenter has parent organization: Eagle I has parent organization: Google Code	ARRA ; NCRR U24RR029825		New BSD License	nlx_144312		SCR_008784		2026-09-12 12:57:09	1
Google Code Resource Report Resource Website 100+ mentions	Google Code (RRID:SCR_005786)	Google Code	software repository, software resource	Developer tools, APIs and resources. Search developers.google.com and code.google.com.	code, developer	lists: Emotion Ontology lists: Porifera Ontology lists: Information Artifact Ontology lists: Mental Functioning Ontology lists: Beta Cell Genomics Ontology lists: Biological Collections Ontology lists: Chemical Methods Ontology lists: Chemical Information Ontology lists: Ontology for Genetic Interval lists: Ontology for Parasite LifeCycle lists: Ontology of Medically Related Social Entities lists: Population and Community Ontology lists: RNA Ontology lists: Vertebrate Taxonomy Ontology lists: Adverse Event Reporting Ontology lists: Neurobehavior Ontology lists: Ontology for General Medical Science lists: GHOSTM lists: nFuse lists: PD5 is parent organization of: GUARDD is parent organization of: APSampler is parent organization of: Cbrowse is parent organization of: SNAVI is parent organization of: TAPS is parent organization of: PyroHMMsnp is parent organization of: d2-tools is parent organization of: msbwt is parent organization of: DySC is parent organization of: BAMseek is parent organization of: GlycoWorkbench is parent organization of: Google Project Hosting is parent organization of: jmzIdentML API is parent organization of: jmzML is parent organization of: GenomicTools is parent organization of: tbrowse is parent organization of: PyroHMMvar is parent organization of: FR-HIT is parent organization of: PeptideShaker is parent organization of: ms lims is parent organization of: Gel2DE is parent organization of: ProRata is parent organization of: MoSDi is parent organization of: Gutentag is parent organization of: SASqPCR is parent organization of: MPprimer is parent organization of: BioCaster Ontology is parent organization of: PoPoolation2 is parent organization of: BMIQ is parent organization of: FadE is parent organization of: Bpipe is parent organization of: Snakemake is parent organization of: SNAPE-pooled is parent organization of: jmzTab is parent organization of: PoPoolation is parent organization of: PerM is parent organization of: tree editor is parent organization of: deStruct is parent organization of: PoPoolation TE is parent organization of: methylKit is parent organization of: SNPdat is parent organization of: CLEVER Toolkit is parent organization of: Clippers is parent organization of: Hydra is parent organization of: MiRPara is parent organization of: phantompeakqualtools is parent organization of: Knime4Bio is parent organization of: Bisulfighter is parent organization of: MOSAIK is parent organization of: SeqTrace is parent organization of: jMHC is parent organization of: BSMAP is parent organization of: PePr is parent organization of: SAAP-RRBS is parent organization of: SoftSearch is parent organization of: Autopack is parent organization of: CROP is parent organization of: eDMR is parent organization of: swDMR is parent organization of: peakrots is parent organization of: AmpliconNoise is parent organization of: HighSSR is parent organization of: ComB is parent organization of: Diplotyper is parent organization of: draw-sneakpeek is parent organization of: MutFinder is parent organization of: reseqtools is parent organization of: breseq is parent organization of: CNValidator is parent organization of: RRBSMAP is parent organization of: B-SOLANA is parent organization of: BatMeth is parent organization of: balony is parent organization of: ngs.plot is parent organization of: discovering-cse is parent organization of: SeqPipe is parent organization of: RseqFlow is parent organization of: orthAgogue is parent organization of: Gene ARMADA is parent organization of: MetExtract is parent organization of: jmzReader is parent organization of: PRIDE Converter 2 is parent organization of: Pride-asap is parent organization of: thermo-msf-parser is parent organization of: SearchGUI is parent organization of: XTandem Parser is parent organization of: Bpredictor is parent organization of: MOABS is parent organization of: CAMPways is parent organization of: compomics-utilities is parent organization of: DeNovoGUI is parent organization of: ProteoCloud is parent organization of: kruX is parent organization of: SlideSort-BPR is parent organization of: SPINAL is parent organization of: PSimScan is parent organization of: NetCoffee is parent organization of: CONDEX is parent organization of: ChiBE is parent organization of: Allim is parent organization of: Cell motility is parent organization of: GlycReSoft is parent organization of: GlycanBuilder is parent organization of: npstat is parent organization of: PoolHap is parent organization of: REDItools is parent organization of: iceLogo is parent organization of: AMS is parent organization of: MP-EST is parent organization of: HLAforest is parent organization of: LocalAli is parent organization of: genCAT is parent organization of: ECO is parent organization of: SobekCM is parent organization of: SimRare is parent organization of: PhenoMan is parent organization of: DistMap is parent organization of: PIPE-CLIP is parent organization of: CD-HIT is parent organization of: eagle-i research resource ontology is parent organization of: Neuropsychological testing ontology is parent organization of: Neurological disease ontology hosts: GenomeSmasher				nlx_149265		SCR_005786		2026-09-12 01:02:34	452
Ontobee Resource Report Resource Website 50+ mentions	Ontobee (RRID:SCR_006321)	Ontobee	controlled vocabulary, data or information resource, database, ontology, service resource	Web-based linked data server and browser specifically designed for ontology terms, it supports ontology visualization, query, and development. Ontobee provides a web interface for displaying the details and hierarchy of a specific ontology term. Meanwhile, Ontobee provides a RDF source code for the particular web page, which supports remote query of the ontology term and the Semantic Web. Ontobee provides an efficient and publicly available method to promote ontology sharing, interoperability, and data integration.	visualization, query, development, ontology, ontology sharing, interoperability, data integration, sparql, FASEB list	lists: Porifera Ontology lists: Chemical Methods Ontology is related to: eagle-i research resource ontology has parent organization: University of Michigan Medical School; Michigan; USA	NIAID R01AI081062		Public	nlx_152048		SCR_006321		2026-09-12 12:56:38	76
CTSA ShareCenter Resource Report Resource Website	CTSA ShareCenter (RRID:SCR_005248)	CTSAShareCenter	community building portal, data or information resource, portal, service resource, software resource	THIS RESOURCE IS NO LONGER IN SERVICE. Documented on December 5th, 2022. An open-source platform designed for organic sharing and collaborative work, it provides the CTSA Consortium with a convenient web platform for networking, exchanging resources, and collaborating. Created and maintained as a tool for the CTSA Consortium, it can be implemented by organizations, either in a standalone installation or via cloud-based hosting provided by Zaloni, Inc. The installation package is available at http://www.getsharecenter.org/, including a package optimized for research networks. ShareCenter integrates with VIVO and is a demonstration site for the new CTSAconnect project that will coalesce the VIVO and eagle-i ontologies. CTSA personnel can use ShareCenter to connect and share with each other, while CTSAs can (a) set up the open-source package, which includes a version optimized for research networks or (b) easily create their own private ''''channel'''' on CTSA ShareCenter. * Search for resources and people. * Contribute your institute''''s gems. * Look cool for being a top contributor! ShareCenter Features * Easy search and access: Find content easily using faceted search. * Team based workspaces: Easily create and manage private collaboration spaces. * Connect with other users and follow their activities: Connect with other CTSA members. Follow their activities. * Subscriptions and Notifications: Subscribe to interesting content and receive notifications when your requests are filled. * Sophisticated categorization of information: Content can be categorized by key function areas, taxonomy and keywords. * Incentives for sharing: Reward users for sharing resources, ideas, expertise, skills.	clinical, translational, science, data sharing, social networking, research network	is related to: Clinical and Translational Science Awards Consortium is related to: CTSAconnect is related to: VIVO is related to: eagle-i research resource ontology is related to: CTSAconnect has parent organization: Oregon Health and Science University; Oregon; USA	National Center for Advancing Translational Sciences		THIS RESOURCE IS NO LONGER IN SERVICE	nlx_144272		SCR_005248	ShareCenter, Clinical Translational Science Awards ShareCenter, CTSA Share Center	2026-09-12 12:56:23	0
BioPortal Resource Report Resource Website 100+ mentions	BioPortal (RRID:SCR_002713)	BioPortal	controlled vocabulary, data or information resource, data repository, ontology, repository, service resource, storage service resource	Open repository of biomedical ontologies that provides access via Web browsers and Web services to ontologies. It supports ontologies in OBO format, OWL, RDF, Rich Release Format (RRF), Protege frames, and LexGrid XML. Functionality includes the ability to browse, search and visualize ontologies as well as to comment on, and create mappings for ontologies. Any registered user can submit an ontology. The NCBO Annotator and NCBO Resource Index can also be accessed via BioPortal. Additional features: * Add Reviews: rate the ontology according to several criteria and describe your experience using the ontology. * Add Mappings: submit point-to-point mappings or upload bulk mappings created with external tools. Notification of new Mappings is RSS-enabled and Mappings can be browsed via BioPortal and accessed via Web services. * NCBO Annotator: Tool that tags free text with ontology terms. NCBO uses the Annotator to generate ontology annotations, creating an ontology index of these resources accessible via the NCBO Resource Index. The Annotator can be accessed through BioPortal or directly as a Web service. The annotation workflow is based on syntactic concept recognition (using the preferred name and synonyms for terms) and on a set of semantic expansion algorithms that leverage the ontology structure (e.g., is_a relations). * NCBO Resource Index: The NCBO Resource Index is a system for ontology based annotation and indexing of biomedical data; the key functionality of this system is to enable users to locate biomedical data linked via ontology terms. A set of annotations is generated automatically, using the NCBO Annotator, and presented in BioPortal. This service uses a concept recognizer (developed by the National Center for Integrative Biomedical Informatics, University of Michigan) to produce a set of annotations and expand them using ontology is_a relations. * Web services: Documentation on all Web services and example code is available at: BioPortal Web services.	biomedical, thesaurus, ontology mapping, annotation, metadata standard, ontology repository, portal, web service, obo, owl, rdf, rrf protege frame, lexgrid xml	lists: MeGO lists: Porifera Ontology lists: EnvO lists: Research Network and Patient Registry Inventory Ontology lists: Semantic DICOM Ontology lists: Time Event Ontology lists: Variation Ontology lists: Vertebrate Skeletal Anatomy Ontology lists: Epoch Clinical Trial Ontology lists: Gazetteer lists: Human Disease Ontology lists: Information Artifact Ontology lists: NCBITaxon lists: Amphibian Taxonomy Ontology lists: Anatomic Pathology Lexicon lists: HIV ontology lists: International Classification of Primary Care - 2 PLUS lists: Mathematical Modelling Ontology lists: Nursing Interventions Classification lists: Phylogenetic Ontology lists: Bleeding History Phenotype Ontology lists: Body System Terms from ICD11 lists: Synthetic Biology Open Language Visual Ontology lists: Teleost Anatomy Ontology lists: Teleost Taxonomy Ontology lists: ECO lists: Bioassay Ontology lists: RightField lists: Gene Ontology lists: HGNC lists: Interaction Ontology lists: International Classification for Nursing Practice lists: Spider Ontology lists: Vertebrate Trait Ontology lists: Mental Functioning Ontology lists: Ascomycete Phenotype Ontology lists: Beta Cell Genomics Ontology lists: Biological Collections Ontology lists: Chemical Methods Ontology lists: Chemical Information Ontology lists: Common Anatomy Reference Ontology lists: Experimental Conditions Ontology lists: Dictyostelium Discoideum Anatomy Ontology lists: Fission Yeast Phenotype Ontology lists: Fly Taxonomy lists: FlyBase Controlled Vocabulary lists: Hymenoptera Anatomy Ontology lists: Influenza Ontology lists: Lipid Ontology lists: Kinetic Simulation Algorithm Ontology lists: Malaria Ontology lists: FMA lists: Minimal Anatomical Terminology lists: NEMO Ontology lists: Ontology for Genetic Interval lists: Ontology for Parasite LifeCycle lists: Ontology of Adverse Events lists: Ontology of Medically Related Social Entities lists: Ontology of Vaccine Adverse Events lists: Rat Strain Ontology lists: Plant Environmental Conditions lists: Plant Trait Ontology lists: Population and Community Ontology lists: RNA Ontology lists: Rat Strain Ontology lists: Subcellular Anatomy Ontology lists: Software Ontology lists: Suggested Ontology for Pharmacogenomics lists: Vertebrate Taxonomy Ontology lists: PharmGKB Ontology lists: Physico-Chemical Process lists: International Classification for Patient Safety lists: Adverse Event Reporting Ontology lists: Experimental Factor Ontology lists: Mass Spectrometry Ontology lists: Master Drug Data Base Clinical Drugs lists: Medaka Fish Anatomy and Development Ontology lists: Medical Diagnostic Categories - Diagnosis Related Groups lists: Medical Dictionary for Regulatory Activities lists: Minimal Standard Terminology of Digestive Endoscopy lists: Minimal Standard Terminology of Digestive Endoscopy - French lists: Ontology of Physical Exercises lists: Mosquito Gross Anatomy Ontology lists: Systematized Nomenclature of Medicine - International Version lists: Mosquito Insecticide Resistance Ontology lists: Mouse Experimental Design Ontology lists: Mouse Gross Anatomy and Development Ontology lists: Systematized Nomenclature of Medicine - Clinical Terms lists: Systems Chemical Biology and Chemogenomics Ontology lists: Mouse Pathology Ontology lists: NIF Cell Ontology lists: NHS Quality Indicators lists: Neural-Immune Gene Ontology lists: Ontology of Physics for Biology lists: Cell Type Ontology lists: Xenopus Anatomy Ontology lists: SO lists: Ontology of Pneumology lists: Open Biological and Biomedical Ontologies Relationship Types lists: Biomedical Resource Ontology lists: MGED Ontology lists: Pharmacovigilance Ontology lists: PhenX Phenotypic Terms lists: Bioinformatics Web Service Ontology lists: SysMO JERM Ontology of Systems Biology for Micro-Organisms lists: MeSH lists: PATO lists: BFO lists: MPO lists: PR lists: Cereal Plant Development Ontology lists: PhenomeBLAST Ontology lists: VIVO lists: Computer Assisted Brain Injury Rehabilitation Ontology lists: Computer Retrieval of Information on Scientific Projects Thesaurus lists: NIFSTD lists: Cell Line Ontology lists: Student Health Record Ontology lists: Zebrafish Anatomical Ontology lists: Physical Medicine and Rehabilitation lists: Randomized Controlled Trials Ontology lists: Human Phenotype Ontology lists: Read Codes Clinical Terms Version 3 lists: Reference Sequence Annotation lists: Regulation of Gene Expression Ontolology lists: Neurobehavior Ontology lists: Regulation of Transcription Ontology lists: Reproductive Trait and Phenotype Ontology lists: Skin Physiology Ontology lists: Vaccine Ontology lists: OMIM lists: MedlinePlus lists: Adult Mouse Anatomy Ontology lists: Bone Dysplasia Ontology lists: Bone and Cartilage Tissue Engineering Ontology lists: Botryllus schlosseri anatomy and development ontology lists: EDAM Ontology lists: LexGrid lists: RxNorm lists: Breast Cancer Grading Ontology lists: Breast Tissue Cell Lines Ontology lists: SBO lists: Resource of Asian Primary Immunodeficiency Diseases Phenotype Ontology lists: Brucellosis Ontology lists: Sleep Domain Ontology lists: C. elegans Development Vocabulary lists: Physician Data Query lists: C. elegans Gross Anatomy Vocabulary lists: Plant Ontology lists: C. elegans Phenotype Vocabulary lists: CPTAC Proteomics Pipeline Infrastructure Ontology lists: Cancer Research and Management ACGT Master Ontology lists: Cancer Chemoprevention Ontology lists: Cell Behavior Ontology lists: Cereal Plant Gross Anatomy Ontology lists: Cardiac Electrophysiology Ontology lists: Cerebrotendinous Xanthomatosis Ontology lists: Cell Cycle Ontology lists: Cell Culture Ontology lists: Cerrado concepts and plant community dynamics lists: Clinical Signs and Symptoms Ontology lists: Clusters of Orthologous Groups Analysis Ontology lists: Computational Neuroscience Ontology lists: BIRNLex lists: Computer-Based Patient Record Ontology lists: Congenital Heart Defects Ontology lists: Drug Interaction Knowledge Base Ontology lists: Healthcare Common Procedure Coding System lists: Host Pathogen Interactions Ontology lists: Human Dermatological Disease Ontology lists: Solanaceae Phenotype Ontology lists: Soy Ontology lists: Spatial Ontology lists: Surgical Secondary Events lists: eagle-i research resource ontology lists: Biological Pathways Exchange lists: Autism Spectrum Disorder Phenotype Ontology lists: BRENDA Tissue and Enzyme Source Ontology lists: BioTop Ontology lists: Family Health History Ontology lists: International Classification of Diseases Version 9 - Clinical Modification lists: BioModels Ontology lists: Bilingual Ontology of Alzheimer lists: BioPortal Metadata Ontology lists: Biochemical Substructure Ontology lists: Biodiversity Ontology lists: Biological Imaging Methods Ontology lists: International Classification of Functioning Disability and Health lists: Biologie Hors Nomenclature lists: International Classification of Primary Care lists: Biomedical Research Integrated Domain Group Model lists: KB Bio 101 lists: Bionutrition Ontology lists: Artificial Intelligence Rheumatology Consultant System Ontology lists: Leukocyte Surface Marker Ontology lists: Cell Line Ontology by Mahadevan lists: Cellular microscopy phenotype ontology lists: ABA Adult Mouse Brain Ontology lists: AEO lists: African Traditional Medicine Ontology lists: Alzheimer's disease ontology lists: Amino Acid Ontology lists: Amphibian Gross Anatomy Ontology lists: Animal Natural History and Life History Ontology lists: Coding Symbols for a Thesaurus of Adverse Reaction Terms lists: Cognitive Atlas Ontology lists: Common Terminology Criteria for Adverse Events lists: Comparative Data Analysis Ontology lists: Content Archive Resource Exchange Lexicon lists: Crop Ontology lists: Current Procedural Terminalogy Hierarchy lists: Current Procedural Terminology lists: DICOM Controlled Terminology lists: Dataset processing lists: Dengue Fever Ontology lists: Dermatology Lexicon lists: Diagnosis Ontology of Clinical Care Classification lists: Diagnostic Ontology lists: Disease core ontology applied to Rare Diseases lists: Dispedia Core Ontology lists: Drosophila Development Ontology lists: Drosophila Gross Anatomy Ontology lists: EDDA Study Design Terminology lists: Electrocardiography Ontology lists: Eligibility Feature Hierarchy lists: Enzyme Mechanism Ontology lists: Enzyme Reaction Ontology for partial chemical perspectives lists: Epilepsy Ontology lists: Loggerhead Nesting Ontology lists: Fanconi Anemia Ontology lists: Fire Ontology lists: Flora Phenotype Ontology lists: Fungal Gross Anatomy Ontology lists: Human Developmental Anatomy Ontology abstract version 1 lists: G Protein-Coupled Receptor BioAssays Ontology lists: Galen Ontology lists: Gene Expression Ontology lists: Gene Ontology Extension lists: General Formal Ontology lists: General Formal Ontology for Biology lists: Genome Component Ontology lists: Genomic Clinical Decision Support Ontology lists: GeoSpecies Ontology lists: Glycomics Ontology lists: Habronattus Courtship Ontology lists: Health Indicator Ontology lists: Health Level Seven Reference Implementation Model Version 3 lists: Human Developmental Anatomy Ontology abstract version 2 lists: Human Developmental Anatomy Ontology timed version lists: Human Interaction Network Ontology lists: Human Physiology Simulation Ontology lists: Logical Observation Identifier Names and Codes lists: IMGT-ONTOLOGY lists: Image and Data Quality Assessment Ontology lists: Immune Disorder Ontology lists: Infectious Disease Ontology lists: InterNano Nanomanufacturing Taxonomy lists: Interaction Network Ontology lists: International Classification of External Causes of Injuries lists: International Classification of Diseases Version 10 lists: International Classification of Diseases Version 10 - Clinical Modification lists: International Classification of Diseases Version 10 - Procedure Coding System lists: MR dataset acquisition lists: Maize Gross Anatomy Ontology lists: Major Histocompatibility Complex Ontology lists: Medical image simulation lists: Menelas Project Top-Level Ontology lists: Mental State Assessment lists: Metagenome Sample Vocabulary lists: Metagenome and Microbes Environmental Ontology lists: MicroRNA Ontology lists: Microbial Culture Collection Vocabulary lists: Microbial Typing Ontology lists: Minimal Information about any Sequence Controlled Vocabularies lists: Minimal Information about any Sequence Ontology lists: NIF Dysfunction Ontlogy lists: NIF Subcellular Ontology lists: NMR-Instrument Component of Metabolomics Investigations Ontology lists: Name Reaction Ontology lists: NanoParticle Ontology lists: National Cancer Institute Thesaurus lists: National Drug Data File lists: National Drug File - Reference Terminology lists: Natural Products Ontology lists: Neglected Tropical Disease Ontology lists: Neomark Oral Cancer Ontology version 3 lists: Neomark Oral Cancer Ontology version 4 lists: Neural Motor Recovery Ontology lists: NeuroMorpho.Org species ontology lists: NeuroMorpho.Org species ontology old lists: Non-Randomized Controlled Trials Ontology lists: Nursing Care Coordination Ontology lists: Ontological Knowledge Base Model for Cystic Fibrosis lists: Ontology for Drug Discovery Investigations lists: Ontology for General Medical Science lists: Ontology for Genetic Disease Investigations lists: Ontology for Genetic Susceptibility Factor lists: Ontology for MicroRNA Target Prediction lists: Symptom Ontology lists: Ontology for Newborn Screening Follow-up and Translational Research lists: Ontology of Alternative Medicine French lists: Ontology of Biological and Clinical Statistics lists: Ontology of Clinical Research lists: Ontology of Core Data Mining Entities lists: Ontology of Data Mining Investigations lists: Pediatric Terminology lists: Ontology of Experimental Variables and Values lists: Ontology of General Purpose Datatypes lists: Ontology of Geographical Region lists: Ontology of Glucose Metabolism Disorder lists: Ontology of Homology and Related Concepts in Biology lists: Ontology of Language Disorder in Autism lists: Orphanet Rare Disease Ontology lists: Parasite Experiment Ontology lists: Pathogen Transmission Ontology lists: Pathogenic Disease Ontology lists: Pharmacogenomic Relationships Ontology lists: Physico-Chemical Methods and Properties lists: Plant Anatomy lists: Syndromic Surveillance Ontology lists: Plant Structure Development Stage lists: Portfolio Management Application lists: Protein Modification Ontology lists: Protein-Protein Interaction Ontology lists: Proteomics Data and Process Provenance Ontology lists: Provenance Ontology lists: QUDT lists: Quantitative Imaging Biomarker Ontology lists: Radiology Lexicon lists: Robert Hoehndorf Version of MeSH lists: Role Ontology lists: STATistics Ontology lists: Sage Bionetworks Synapse Ontology lists: Sample Processing and Separation Techniques Ontology lists: Santa Barbara Coastal Observation Ontology lists: Semantic Types Ontology lists: Semantic Web for Earth and Environment Technology Ontology lists: Semanticscience Integrated Ontology lists: Single-Nucleotide Polymorphism Ontology lists: Situation-Based Access Control Ontology lists: Taxonomic Rank Vocabulary lists: Taxonomy for Rehabilitation of Knee Conditions lists: Terminological and Ontological Knowledge Resources Ontology lists: Tick Gross Anatomy Ontology lists: Tissue Microarray Ontology lists: Traditional Medicine Constitution Value Set lists: Traditional Medicine Meridian Value Sets lists: Traditional Medicine Other Factors Value Set lists: Traditional Medicine Signs and Symptoms Value Set lists: Translational Medicine Ontology lists: Tribolium Ontology lists: Units Ontology lists: Units of Measurement Ontology lists: Upper-Level Cancer Ontology lists: Vertebrate Homologous Organ Group Ontology lists: Veterans Health Administration National Drug File lists: Vital Sign Ontology lists: WHO Adverse Reaction Terminology lists: Web-Service Interaction Ontology lists: Wheat Trait Ontology lists: XEML Environment Ontology lists: suicideo lists: suicideonto lists: Pseudogene lists: Terminology for the Description of Dynamics lists: Gene Regulation Ontology lists: UBERON lists: CHEBI lists: Cognitive Paradigm Ontology lists: Emotion Ontology lists: Clinical Measurement Ontology lists: Measurement Method Ontology lists: NCI Thesaurus lists: Ontology for Biomedical Investigations lists: Biological Pathways Exchange is listed by: Biositemaps is listed by: FORCE11 is related to: Provisional Cell Ontology has parent organization: National Center for Biomedical Ontology has parent organization: Stanford University; Stanford; California has parent organization: Stanford Center for Biomedical Informatics Research is parent organization of: NCBO Annotator	NIGMS U24 GM143402	PMID:19483092 PMID:21672956 PMID:18999306	Free, Available for download, Freely available	nif-0000-23346, r3d100012344	https://www.force11.org/node/4646, https://doi.org/10.17616/R3J362	SCR_002713	BioPortal Knowledgebase	2026-09-12 12:55:45	363
Eagle I Resource Report Resource Website 10+ mentions	Eagle I (RRID:SCR_013153)	eagle-i, eagle i, eaglei	data or information resource, database	Web application to discover resources available at participating networked universities. This distributed platform for creating and sharing semantically rich data is built around semantic web technologies and follows linked open data principles.	ontology, semantic web, rdf, sparql endpoint, linked open data, distributed platform, protocol	lists: BWH Partners Tissue and Blood Repository lists: MSU Subzero Science and Engineering Research Core Facility lists: OHSU MRI Support Core Laboratory lists: Penn Cell and Developmental Biology Zebrafish Core lists: Penn Clinical Research Computing Unit lists: Penn Community Outreach Using Health System Informatics Core lists: UPR Medical Mycology Laboratory lists: Vanderbilt Bradykinin Core Laboratory lists: BWH Surgical Planning Laboratory lists: Children's Hospital Informatics Program lists: DF/HCC Health Communication Core lists: DF/HCC Specialized Histopathology Services Core lists: Dartmouth College Clinical Pharmacology Shared Resource Core Facility lists: Dartmouth Geospatial Shared Resource lists: FAMU Drug Discovery Core Facility lists: FAMU Flow cytometry laboratory lists: HMS NERCE FACSCalibur Flow Cytometer Resource lists: Harvard HSCI iPS Cell Core Facility lists: Harvard NeuroDiscovery Center - Biomarker Study lists: Harvard Partners HealthCare Center for Personalized Genetic Medicine Bioinformatics Core Facility lists: Hunter NMR Spectroscopy Facility lists: JSU Environmental Toxicology Core Lab lists: MGH Center for Morphometric Analysis lists: MGH Vector Development and Production Core Facility lists: MSU Magnetic Resonance Core Laboratory lists: Penn Diabetes Research Center Mouse Phenotyping Physiology and Metabolism Core lists: Penn Research Instrumentation Shop lists: Penn Small Animal Imaging Facility: PET/SPECT/CT Sub-Core lists: Penn Translational Biomarker Core lists: UH Manoa Insect Museum lists: UTEP BSL 3 Laboratory lists: UTSA Engineering Core lists: Vanderbilt Flow Cytometry Core Laboratory lists: Vanderbilt Diabetes Research and Training Center Islet Procurement and Analysis Core lists: Vanderbilt X-Ray Photoelectron Spectroscopy Lab lists: Wyss Institute Imaging Core lists: XULA Materials Research - Shared Instrumentation Facilities lists: Hunter Genomic Facility lists: UPR Analysis Resource Center Confocal Microscopy Core Laboratory lists: UPR Conrado F. Asenjo Library lists: UPR Confocal Microscope Facility lists: UPR Department of Environmental Health Core Laboratory lists: HSPH Trace Metals Laboratory lists: Dartmouth Science Division Electronics Shop lists: Arnold Arboretum of Harvard University: Weld Hill Microscopy Lab lists: Arnold Arboretum of Harvard University: Weld Hill Molecular Lab lists: BWH Cell Culture and Microscopy Core lists: Hunter Nanoscale Analytical Facility lists: Dartmouth SYNERGY Clinical Research Unit lists: Dartmouth Shared Instruments Core Laboratory lists: Vanderbilt Energy Balance Core Laboratory lists: BWH Circulating Tumor Cell Core lists: University of Pennsylvania School of Medicine Penn Diabetes Research Center Pancreatic Islet Cell Biology Core Facility lists: HSPH Molecular Analysis Facility lists: HSPH Organic Chemistry Laboratory lists: Boston Area Diabetes Endocrinology Research Center Metabolic Physiology and Energy Balance Core Facility lists: Harvard FAS Magnetic Resonance Laboratory lists: Howard Flow Cytometry Core lists: CAU CCRTD-Histology Core lists: Penn Laser Confocal Microscope Core lists: Vanderbilt Free Radicals in Medicine Core lists: UAF Alaska Stable Isotope Facility lists: CDU Cancer Research and Training Core Facility lists: CHB Ultrasound lists: Penn Automated Claims and Medical Record Databases lists: Arnold Arboretum of Harvard University: Weld Hill Growth Facilities lists: BIDMC Biomedical Research Informatics Core Laboratory lists: BIDMC CVVR Flow Cytometry Core lists: BIDMC Cardiac Physiology Core Laboratory lists: BIDMC Clinical Research Coordinator Core Laboratory lists: BIDMC DNA Sequencing Core lists: HMS Flow Cytometry Facility lists: Beth Israel Deaconess Medical Center Genomics Proteomics Bioinformatics and Systems Biology Center lists: BIDMC Longwood Small Animal Imaging Core Facility lists: CHB Cellular Imaging Core lists: BIDMC Mass Spectrometry Core lists: BIDMC Multi-Gene Transcriptional Profiling Core lists: BIDMC Preclinical Murine Pharmacogenetics Core lists: BIDMC Real-Time PCR Core lists: BIDMC Transgenic Core Facility lists: BIDMC X-ray Crystallography Core lists: BIDMC eData Collection Core lists: BWH Biostatistics Center lists: BWH CytoGenomics lists: BWH DNA Sequencing Core lists: BWH Flow Cytometry Core Laboratory lists: BWH Sleep and EEG Core lists: BWH Specialty Assay Research Core Laboratory lists: CAU CCRTD-Proteomics lists: BWH Transgenic Core Facility lists: BWH-BRI Antibody Core Facility lists: Broad Genetic Analysis Platform lists: CAU CCRTD-Cell Biology lists: CAU CCRTD-Molecular Biology lists: HSDM Micro CT Core lists: CAU CCRTD-Structural Biology lists: Clark Atlanta University Collaborative Center for Cancer Genomics and Bioinformatics Core Facility lists: CCNY Fluorescence Activated Cell Sorting lists: CCNY Microscopy Facility lists: CCNY RCMI Core Facility lists: CDU AXIS Biomedical Informatics function lists: CDU Exercise Physiology Laboratory lists: CDU Metabolic and Oxidative Stress Core Laboratory lists: CDU Morphometry and Stereology Laboratory lists: CDU Vivarium lists: CHB Advanced Fetal Care Center lists: CHB Cell Sorter Core lists: CHB Transgenic Core Laboratory lists: CHB Cellular Neuroscience Core Laboratory lists: CHB Computational Radiology Laboratory lists: CHB Computed Tomography Core Imaging Facilities lists: CHB Diagnostic Radiology Core lists: CHB Epithelial Cell Biology Core lists: Massachusetts Host-Microbiome Center lists: CHB Magnetic Resonance Imaging lists: CHB Molecular Genetics Core Facility lists: CHB Molecular and Cellular Biochemistry Core lists: CHB Nuclear Medicine and Molecular Imaging lists: CHB Radiopharmaceutical Chemistry Laboratory lists: CHB Small Animal Imaging Core Laboratory lists: CHOP Biostatistics and Data Management Core lists: CHOP CTRC Behavioral Neurosciences Core lists: CHOP CTRC Cardiovascular Imaging Core lists: CHOP CTRC Nutrition Core Nutrition Assessment lists: CHOP CTRC Ophthalmology Core lists: CHOP Clinical Trials Office lists: CHOP Human Embryonic stem cell/induced pluripotent stem cell Core lists: CHOP Nucleic Acid/Protein Core lists: CHOP Pathology Core Laboratories lists: DF/HCC Biostatistics Core Facility lists: DF/HCC Cancer Pharmacology Core lists: Dana Farber and Harvard Cancer Center Cancer Proteomics Center lists: DF/HCC Cell Manipulation Core Facility lists: DF/HCC Community Practice Research Core lists: DF/HCC High-Throughput Polymorphism Detection Core lists: Dartmouth Department of Physics: Apparatus Shop Core Laboratory lists: DF/HCC Monoclonal Antibody Core lists: DF/HCC Pathology Specimen Locator lists: DF/HCC Rodent Histopathology Core Facility lists: DF/HCC Tissue Microarray and Imaging Core Facility lists: DF/HCC Tumor Imaging Metrics Core Facility lists: DFCI Animal Resources Facility lists: DFCI Biohazard Containment Core Facility lists: DFCI Biospecimen Repository Core Facility lists: DFCI Blais Proteomics Center lists: DFCI Clinical Research Laboratory lists: DFCI Survey 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Translational Pathology Shared Resource lists: Vanderbilt Zebrafish Aquatic Facility lists: Wistar Bioinformatics Core Facility lists: Wistar Genomics Core Facility lists: Wistar Histotechnology Core Facility lists: Wistar Imaging Core Facility lists: Wistar Molecular Screening Facility lists: XULA Major Instrumentation Core lists: Wistar Protein Expression Facility lists: Wistar Proteomics and Metabolomics Core Facility lists: Wyss Institute Machine Shop / 3D Prototyping Core lists: Wyss Institute Materials Characterization Core lists: XULA Animal Care Facility lists: XULA Center for Nanomedicine and Drug Delivery lists: XULA RCMI Cell and Molecular Biology Core lists: XULA RCMI Molecular Structure and Modeling Core lists: Harvard FAS Bauer Core Laboratory lists: BWH Research Imaging Core lists: Penn Induced Pluripotent Stem Cell Core Facility lists: HNDC Enhanced NeuroImaging Core lists: University of Pennsylvania Genomics Analysis Core lists: Meharry Proteomics Core lists: Meharry Microarray and Bioinformatics Core lists: Dartmouth DartLab lists: MGH NextGen Sequencing Core lists: Joslin Diabetes Center Islet Isolation Core lists: MGH Psychiatric and Neurodevelopmental Genetics Unit Core Lab lists: HMS Research Imaging Solutions lists: Harvard SERI Graphic Services Core lists: DFCI Confocal and Light Microscopy Core Facility lists: BWH Specimen Bank lists: MGH Martinos Center for Biomedical Imaging Core Facility lists: HNDC NeuroBehavior Laboratory Core lists: Harvard Chan Bioinformatics Core lists: HNDC Advanced Tissue Resource Center lists: DF/HCC DNA Resource Core lists: HNDC Drug Discovery in Neurodegeneration lists: DFCI Center for Cancer Computational Biology lists: HMS Systems Biology Flow Cytometry Facility lists: OHSU Molecular Virology Support Core is listed by: FORCE11 is related to: CTSAconnect is related to: Clinical and Translational Science Awards Consortium has parent organization: Harvard University; Cambridge; United States has parent organization: Oregon Health and Science University; Oregon; USA is parent organization of: eagle-i research resource ontology	ARRA ; NCRR U24 RR029825	PMID:22434835	Available to external user, The community can contribute to this resource	r3d100011564, nlx_143592	https://www.eagle-i.org/, https://www.force11.org/node/4661	SCR_013153		2026-09-12 01:02:09	10

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