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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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NIDDK Research Resources Resource Report Resource Website |
NIDDK Research Resources (RRID:SCR_014372) | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on June 29,2023. Registry listing NIDDK resources, such as reagents, data, and protocols. They are derived from publicly available information provided by NIDDK-funded investigators, projects, and publications. | research, registry, diabetes, kidney disease, reagent, data, protocol |
lists: NIDDK Information Network (dkNET) lists: Action to Control Cardiovascular Disease Risk in Diabetes Follow-up Study (ACCORDION) lists: Predicting Response to Standardized Pediatric Colitis Therapy (PROTECT) lists: Lifestyle Interventions for Expectant Moms (LIFE-Moms) lists: Hyperglycemia and Pregnancy Outcomes Follow-Up Study Consortium (HAPO-FUS) lists: Nephrotic Syndrome Study Network (NEPTUNE) lists: CKD Biomarkers Consortium lists: Porphyria Consortium lists: Vitamin D to Prevent Type 2 Diabetes (D2d) lists: Glycemic Reduction Approaches in Diabetes: A Comparative Effectiveness Study (GRADE) lists: Symptoms of Lower Urinary Tract Dysfunction Research Network (LURN) lists: Clinical Islet Transplantation Consortium (CITC) lists: Restoring Insulin Secretion Consortium (RISE) lists: Assessment Serial Evaluation and Subsequent Sequelae in Acute Kidney Injury (ASSESS-AKI) lists: Integrated Islet Distribution Program (IIDP) lists: Rare Kidney Stone Consortium (RKSC) lists: Evaluating Predictors and Interventions in Sphincter of Oddi Dysfunction lists: Efficacy and Mechanisms of Glutamine Dipeptide in the Surgical Intensive Care Unit lists: Intestinal Stem Cell Consortium lists: RiVuR lists: Gastroparesis Clinical Research Consortium lists: Urologic Diseases in America lists: United States Renal Data System lists: HALT PKD lists: Chronic Renal Insufficiency Cohort Study lists: HEALTHY study lists: Viral Resistance to Antiviral Therapy of Chronic Hepatitis C lists: Peginterferon and Ribavirin for Pediatric Patients with Chronic Hepatitis C lists: HALT-C Trial lists: TRIGR lists: Treatment Options for type 2 Diabetes in Adolescents and Youth lists: Study of Nutrition in Acute Pancreatitis lists: SEARCH for Diabetes in Youth lists: Organ Procurement and Transplantation Network lists: Nuclear Receptor Signaling Atlas lists: NIH Common Fund lists: Mutant Mouse Resource and Research Center lists: GenitoUrinary Development Molecular Anatomy Project lists: National Mouse Metabolic Phenotyping Centers lists: IPD-MHC- Major Histocompatibility Complex lists: High-dose Ursodiol Therapy of Primary Sclerosing Cholangitis lists: Hepatitis B Research Network lists: Functional Dyspepsia Treatment Trial lists: Cooperative Study Group for Autoimmune Disease Prevention lists: Clinical Outcomes Research Initiative lists: BISC lists: The Immunology Database and Analysis Portal (ImmPort) lists: Beta Cell Biology Consortium lists: Autoimmunity Centers of Excellence lists: HemBase lists: Longitudinal Assessment of Bariatric Surgery lists: Minnesota Liver Tissue Cell Distribution System lists: Knockout Mouse Project lists: Immune Tolerance Network (ITN) lists: Multi-Disciplinary Approach to the Study of Chronic Pelvic Pain is listed by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases |
Diabetes, Kidney disease | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_014372 | SciCrunch Registry | National Institute of Diabetes and Digestive and Kidney Diseases Research Resources | 2026-10-17 01:34:16 | 0 | ||||||||
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Psychotropics Resource Report Resource Website 1+ mentions |
Psychotropics (RRID:SCR_013600) | data or information resource, database | The Lundbeck Institute is pleased to present Psychotropics Online, a comprehensive guide to CNS compounds and products. A database of psychotropic and neurological drugs. Generic name, Trade name, Description, Code numbers, Monographies, Tranquilizers - Anxiolytics, Anxiolytics / Antipsychotics, Neuroleptics and Antipsychotics, Monoamine Oxidase Inhibitors, Antidepressants, Antidementia drugs, Sympathomimetics, Antiparkinsonians, Anticonvulsants, Hallucinogenic Agents, Additional Group, Biochemical profiles, Side-effects, Antipsychotics, Tranquilizers - anxiolytics, Tricyclic Antidepressants (TCAs), Selective Serotonin Reuptake Inhibitors (SSRIs), Selective Serotonin and Noradrenaline Reuptake Inhibitors (SNRIs), Selective Noradrenaline Reuptake Inhibitors (NARIs), MAO inhibitors (MAOIs), Sympathomimetics, Anticonvulsants, Lithium, Barbiturates, Street names, Terminal plasma half-lives, Orphan drugs | nif-0000-00433 | SCR_013600 | SciCrunch Registry | Psychotropics | 2026-10-17 01:35:17 | 1 | |||||||||||
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Secreted Protein Database Resource Report Resource Website 10+ mentions |
Secreted Protein Database (RRID:SCR_013448) | SPD | data or information resource, database | A collection of secreted proteins from Human, Mouse and Rat proteomes, which includes sequences from SwissProt, Trembl, Ensembl and Refseq. The 18,152 entries are classified into fourteen functional categories, including "apolipoprotein", "cytokine", "protease", "toxin", etc. To make the dataset more comprehensive, nine related datasets were also collected, such as SPDI, Riken mouse secretome, SwissProt vertebrate secreted proteins, SubLoc etc. | has parent organization: Peking University; Beijing; China | nif-0000-03449 | SCR_013448 | SciCrunch Registry | Secreted Protein Database | 2026-10-17 01:35:15 | 11 | |||||||||
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Paper Critic Resource Report Resource Website |
Paper Critic (RRID:SCR_014019) | data or information resource, database | A database that archives publications and allows users to review and critique them. Users can write comments for and rate submitted publications for references, originality, argumentation, and reliability. Papercritic also collects tweets and blog posts about published papers to add as reviews and comments. Researchers who submit their published work to PaperCritic can keep track of multiple types of feedback. All reviews must be submitted with full identity disclosure. | database, authoring, evaluation, peer review |
is listed by: Connected Researchers is related to: Mendeley is related to: Connected Researchers |
The community can contribute to this resource | SCR_014019 | SciCrunch Registry | 2026-10-17 01:33:37 | 0 | ||||||||||
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BSORF - Bacillus Subtilis Genome Database Resource Report Resource Website 1+ mentions |
BSORF - Bacillus Subtilis Genome Database (RRID:SCR_013451) | data or information resource, database | This website provides a resource for the Bacillus subtilis genome. It provides a list of mutants, DNA array data, and search features against both the whole genome and coding sequences. It also contains Kegarrays and access to the KEGG Expression Database. | bacillus subtilis, bacillus subtilis genome, bacillus subtilis mutant | has parent organization: Kyoto University; Kyoto; Japan | nif-0000-02624 | SCR_013451 | SciCrunch Registry | BSORF | 2026-10-17 01:34:15 | 2 | |||||||||
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ApiDB ToxoDB Resource Report Resource Website 100+ mentions |
ApiDB ToxoDB (RRID:SCR_013453) | ApiDB ToxoDB | data or information resource, database | A genome and functional genomic database for the protozoan parasite Toxoplasma gondii. It incorporates the sequence and annotation of the T. gondii ME49 strain, as well as genome sequences for the GT1, VEG and RH (Chr Ia, Chr Ib) strains. Sequence information is integrated with various other genomic-scale data, including community annotation, ESTs, gene expression and proteomics data. Organisms * Toxoplasma gondii (ME49, RH, GT1, Veg strains) * Neospora caninum * environmental isolate sequences from numerous species Tools * BLAST: Identify Sequence Similarities * Sequence Retrieval: Retrieve Specific Sequences using IDs and coordinates * PubMed and Entrez: View the Latest Toxoplasma, Neospora Pubmed and Entrez Results * Genome Browser: View Sequences and Features in the genome browser * Ancillary Genome Browse: Access Additional info like Probeset data and Toxoplasma Array info | end-sequencing, bac clone, data mining tool, microarray, proteomic sequencing, toxoplasma gondii, bac clone, 8x random shotgun, genomic sequencing project, snp, qtl, sequencing, genomic, non-vertebrate, unicellular, eukaryote, genome, pathogen, toxoplasmosis, bio.tools, FASEB list |
is listed by: bio.tools is listed by: Debian has parent organization: Eukaryotic Pathogen Database Resources |
NIAID contract HHSN266200400037C | PMID:18003657 PMID:12519989 |
r3d100012266, biotools:toxodb, nif-0000-03572 | https://bio.tools/toxodb | http://ToxoDB.org | SCR_013453 | SciCrunch Registry | Toxoplasma Genomics Resource, ToxoDB | 2026-10-17 01:33:34 | 153 | ||||
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Findings App Resource Report Resource Website |
Findings App (RRID:SCR_013972) | electronic laboratory notebook, software application, software resource | An ELN (electronic lab notebook) software application that allows researchers to organize and manage experiment tasks, protocols, and results. Users can divide experiments into tasks spread across weeks and keep track of multiple experiments and protocols using a variety of apps, such as timestamps and completion markers. Files can be stored in the Findings library and opened in a given application. | ELN, electronic laboratory notebook, organization, software application |
is listed by: Connected Researchers is related to: Connected Researchers |
Only for Mac, License needed for advanced packages | SCR_013972 | SciCrunch Registry | FindingsApp | 2026-10-17 01:33:37 | 0 | |||||||||
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Animal Diversity Web Resource Report Resource Website 1+ mentions |
Animal Diversity Web (RRID:SCR_013658) | data or information resource, database | Animal Diversity Web (ADW) is an online database of animal natural history, distribution, classification, and conservation biology at the University of Michigan :Animal Diversity Web Has: Thousands of species accounts about individual animal species. These may include text, pictures of living animals, photographs and movies of specimens, and/or recordings of sounds. Students write the text of these accounts and we cannot guarantee their accuracy. Descriptions of levels of organization above the species level, especially phyla, classes, and in some cases, orders and families. Hundreds of hyperlinked pages and images illustrate the traits and general biology of these groups. Professional biologists prepare this part. :Animal Diversity Web Is An Online Encyclopedia: ADW is a large searchable encyclopedia of the natural history of animals. Every day, thousands of classroom students and informal visitors use it to answer animal questions. Other sites specialize in local, endangered, or particular kinds of animals. We aim to be as comprehensive as possible. :A Science Learning Tool: ADW facilitates inquiry-driven learning, that is, teaching about science by leading students to use the methods of science. Our large database is structured, providing consistent information for all species to foster comparisons. An advanced search tool allows a user to call up species accounts fitting any combination of descriptors. Students can explore for patterns and relationships, learn how to frame and answer scientific questions and, with the help of a good teacher, experience the excitement and satisfaction of doing science. Our long-term goal is to create a database rich enough that students can discover for themselves basic concepts in ecology and conservation biology. :A Virtual Museum: ADW provides a way to make the contents of research museums available globally for teaching and research. So far, our efforts have been directed mainly at mammals. Photographs of scientific specimens are available for representative species from most mammal families. We''ve also included several hundred Quick Time Virtual Reality Movies of skulls. These allow the user to rotate the specimen, providing an excellent impression of its 3-dimensional structure. We''ve written in depth about and illustrated many of the characteristics of interest to students of mammals. An important goal for the future is to expand to cover other groups of animals and include other media such as animal behavior video. :Wiki features, database, teaching tool : | has parent organization: University of Michigan; Ann Arbor; USA | nif-0000-00419 | SCR_013658 | SciCrunch Registry | Animal Diversity Web | 2026-10-17 01:33:37 | 3 | ||||||||||
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SHERPA RoMEO Resource Report Resource Website |
SHERPA RoMEO (RRID:SCR_013815) | data or information resource, database | A database which houses publisher policies regarding the self- archiving of journal articles on the web and in Open Access repositories. RoMEO contains publishers' general policies on self-archiving of journal articles and certain conference series. Each entry provides a summary of the publisher's policy, including what version of an article can be deposited, where it can be deposited, and any conditions that are attached to that deposit. | database, publisher policy, open access |
is listed by: Connected Researchers is related to: Connected Researchers has parent organization: University of Nottingham; Nottingham; United Kingdom |
JISC ; Wellcome Trust |
Free, Public | SCR_013815 | SciCrunch Registry | RoMEO | 2026-10-17 01:35:18 | 0 | ||||||||
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Mouse Phylogeny Viewer Resource Report Resource Website 10+ mentions |
Mouse Phylogeny Viewer (RRID:SCR_014071) | data or information resource, database | A custom genome browser which provides detailed answers to questions on the haplotype diversity and phylogenetic origin of the genetic variation underlying any genomic region of most laboratory strains of mice (both classical and wild-derived). Users can select a region of the genome and a set of laboratory strains and/or wild caught mice. The region is selected by specifying the start (e.g. 31200000 or 31200K or 31.2M), and end of the interval and the chromosome (i.e, autosome number and X chromosome). Samples can be selected by name or by entire set. Data sets include information on subspecific origin, heterozygosity regions, and haplotype coloring, among others. | mouse, genetic, software, phylogeny, browser | has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA | NHGRI P50 HG 006582; NIAID U54 AI 081680; NSF ISS 0534580 |
PMID:22536897 | SCR_014071 | SciCrunch Registry | 2026-10-17 01:34:16 | 11 | |||||||||
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Nanomaterial Registry Resource Report Resource Website 100+ mentions |
Nanomaterial Registry (RRID:SCR_013700) | MIAN | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on June 9,2023. Registry that archives curated nanomaterial research data and their biological and environmental implications. The Registry provides data management plans for researchers, and accepts users' public-ready data, archive them, integrate them into the registry, allowing for the data to be shared publicly. Users can request more information on specific nanomaterial records, compare multiple nanomaterials, and export data to their desktop. | registry, information resource, nanomaterial, data management | is listed by: NIH Data Sharing Repositories | NIH | DOI:10.1109/BIBMW.2012.6470258 | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_013793, r3d100011129 | https://doi.org/10.17616/R38S53 | SCR_013700 | SciCrunch Registry | 2026-10-17 01:33:35 | 151 | |||||
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SciTran Resource Report Resource Website 1+ mentions |
SciTran (RRID:SCR_013666) | data or information resource, database | Scientific Transparency (SciTran) is a software project that has grown out of the Project on Scientific Transparency at Stanford University. At the heart of SciTran is a scientific data management system – SDM – designed to enable and foster reproducible research. SciTran SDM delivers efficient and robust archiving, organization, and sharing of scientific data. We have developed the system around neuroimaging data, but our goal is to build a system that is flexible enough to accomodate all types of scientific data – from paper-and-pencil tests to genomics data. SDM will also allow for the sharing of data and computations between remote sites. SciTran is open-source software, released under the MIT license. Our code is hosted on GitHub. Feel free to try it out or to contribute. Commercial support for SciTran SDM is available through our partners at Flywheel. Check out their demo, if you''d like to give SDM a quick try. | open science | has parent organization: Stanford University; Stanford; California | SCR_013666 | SciCrunch Registry | 2026-10-17 01:34:16 | 3 | |||||||||||
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MSDF Drug Development Pipeline Resource Report Resource Website 1+ mentions |
MSDF Drug Development Pipeline (RRID:SCR_013825) | data or information resource, database | A database providing information about compounds under investigation for therapeutic use. There are currently 44 compounds on record with 100 compounds in the process of being uploaded to the database. | database, drug development, pipeline, therapeutic use |
is listed by: Multiple Sclerosis Discovery Forum is related to: Multiple Sclerosis Discovery Forum has parent organization: Multiple Sclerosis Discovery Forum |
Free, Public | SCR_013825 | SciCrunch Registry | Drug-Development Pipeline, MSDF Drug-Development Pipeline | 2026-10-17 01:33:37 | 1 | |||||||||
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CitationStyles Resource Report Resource Website |
CitationStyles (RRID:SCR_014000) | data or information resource, database | A database that contains different CSL citation styles. Styles can be searched by name, journal title, or by example and then viewed or installed. Users can also edit current styles and save them. | database, CSL, CSL editor, CSL styles |
is listed by: Connected Researchers is related to: Citation Style Language is related to: Connected Researchers has parent organization: Mendeley |
Public, The community can contribute to this resource | SCR_014000 | SciCrunch Registry | 2026-10-17 01:35:18 | 0 | ||||||||||
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Ontology-based Knowledgebase for Human Cell Adhesion Molecules Resource Report Resource Website |
Ontology-based Knowledgebase for Human Cell Adhesion Molecules (RRID:SCR_013555) | data or information resource, database | OKCAM (Ontology-based Knowledgebase for Cell Adhesion Molecules) is an online resource for human genes known or predicted to be related to the processes of cell adhesion. These genes include members of the cadherin, immunoglobulin/FibronectinIII (IgFn), integrin, neurexin, neuroligin, and catenin families. :We have mapped these genes onto a novel cell adhesion molecule ontology (CAMO) that provides a hierarchical description of cell adhesion molecules and their functions. It is intended to provide a means to facilitate better and better understanding of the global and specific properties of CAMs through their genomic features, regulatory modes, expression patterns and disease associations become clearer. :Cadherins, IgCAMs, Integrins, Neurexins, Neuroligins, Catenins : | has parent organization: National Institutes of Health | nif-0000-00399 | SCR_013555 | SciCrunch Registry | OKCAM | 2026-10-17 01:35:16 | 0 | ||||||||||
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Conquest DICOM software 1.4.15 Resource Report Resource Website |
Conquest DICOM software 1.4.15 (RRID:SCR_013513) | data or information resource, database | Fast error free and transparent compression (>2x) of image data on disk with NKI private or JPEG compression. A database browser and slice viewer integrated in the PACS system with options for: viewing DICOM header, creating BMP files (ideal for slides), sending selected images, printing, database fix tools such as changing patient IDs, deleting and anonymizing studies and series, and splitting and merging series. Uses drag and drop to load DICOM and HL7 files. A simple query/move user interface for diagnostic purposes, to improve your knowledge of DICOM, and to grab missing data from another server. Elementary DICOM print server and client - prints to the default printer. Correct display of JPEG and RLE compressed images in browser. Flexible configuration of JPEG and NKI private compression with optional (de)compression of incoming, dropped, transmitted and archived files. The JPEG compression is done using executables from the OFFIS DICOM toolkit (DCMTK version 3.5.4), developed by Kuratorium OFFIS e.V. A simple DICOM Modality Worklist implementation with HL7 import with configurable translation. A CGI WEB interface with several possible viewers (especially important for the Linux version without a GUI). The server can act as an advanced scriptable DICOM image forwarder and/or DICOM image cache. The server integrates an advanced DICOM viewer based on K-PAC DICOM training and testing Demonstration and research image archives Image format conversion from a scanner with DICOM network access DICOM image viewing and slide making DICOM image selection, (limited) editing, and splitting and merging of series Advanced scriptable image modification, filtering, forwarding and conversion DICOM caching and archive merging DICOM web access for viewing and data management (scriptable) | nif-0000-30381 | SCR_013513 | SciCrunch Registry | Conquest DICOM | 2026-10-17 01:33:36 | 0 | |||||||||||
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PromEC Resource Report Resource Website 1+ mentions |
PromEC (RRID:SCR_013514) | data or information resource, database | A compilation of E. coli mRNA promoter sequences. It includes documentation on the location of experimentally identified mRNA transcriptional start sites on the E. coli chromosome, as well as the actual sequences in the promoter region. The database is currently updated as of July 2000 and includes 471 entries. | PMID:11125111 | nif-0000-03345 | SCR_013514 | SciCrunch Registry | PromEC | 2026-10-17 01:34:16 | 7 | ||||||||||
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HUGE - Human Unidentified Gene-Encoded large proteins Resource Report Resource Website 10+ mentions |
HUGE - Human Unidentified Gene-Encoded large proteins (RRID:SCR_013482) | data or information resource, database | The HUGE protein database has been created to publicize the Human cDNA project at the Kazusa DNA Research Institute. This project will sequence and analyze long (>4 kb) human cDNAs and establish methods by using the sequence data how to predict the primary structure of proteins of various biological activities. Currently, it focuses on the analysis of cDNA clones encoding particularly large proteins (>50 kDa). The HUGE protein database contains various types of information derived from the predicted primary structure data of newly identified human proteins. The HUGE protein database are expected to cover various sets of large human proteins of hitherto unidentified functions. They are likely to be involved in cellular structure/motility (such as cytoskeleton, membrane skeleton, and motor proteins), gene expression and nucleic acid metabolism, cell signaling/communication (such as cellular adhesion, signal transduction, channels, and receptors), and so on. | cdna, human protein, bio.tools |
is listed by: bio.tools is listed by: Debian |
nif-0000-02990, biotools:huge | https://bio.tools/huge | SCR_013482 | SciCrunch Registry | HUGE | 2026-10-17 01:33:36 | 17 | ||||||||
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Simbiome Resource Report Resource Website |
Simbiome (RRID:SCR_013640) | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 18, 2015. Simbiome is a curated, online electronic resource that organizes and presents relevant resources for physics-based simulation of biomedical structures and related entities in biology and life sciences. | entity, biology, biomedical, life, organize, physics, present, science, simulation, structure | has parent organization: Stanford University; Stanford; California | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-33158 | SCR_013640 | SciCrunch Registry | Simbiome | 2026-10-17 01:34:16 | 0 | ||||||||
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Striatal Subregional VOImap Resource Report Resource Website |
Striatal Subregional VOImap (RRID:SCR_014173) | atlas, data or information resource | An atlas intended to provide accurate data in terms of specific uptake location to make the BP quantitation. The VOIs were manually drawn with software Analyze 9.0 (Mayo Clinic) in 18F-DOPA brain image after spatial normalization with a 18F-DOPA Template. Each striatum was divided into 6 sub-regions: ventral caudate, anterior dorsal caudate, posterior dorsal caudate, ventral putamen, anterior dorsal putamen and posterior dorsal putamen. | atlas, map, bp quantitation, striatum, uptake location | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Available to the research community, Free, Acknowledgement requested | SCR_014173 | SciCrunch Registry | 2026-10-17 01:33:37 | 0 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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