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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
Quality of Medical Data
 
Resource Report
Resource Website
Quality of Medical Data (RRID:SCR_000520) data or information resource, narrative resource, portal, topical portal, wiki Portal serves as resource to understand the current state of medical data quality and the factors that affect it. The information is gathered from anecdotal and empirical examples from peer-reviewed journals, popular media and author contributions. Issues of importance include understanding and measuring medical data quality, contributing factors, best practices, and the effects of data quality on secondary uses of medical data. medical, medicine, data, quality, journal, media, empirical, anecdotal, best practice THIS RESOURCE IS NO LONGER IN SERVICE nlx_39837 SCR_000520 2026-09-12 12:55:11 0
NVM
 
Resource Report
Resource Website
NVM (RRID:SCR_000600) data processing software, data visualization software, software application, software resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 6, 2023. Software tool for quantitative neuroanatomical measurements in volumetric image data. Used to draw regions of interest for subsequent fMRI analysis. quantitative, neuroanatomical, measurement, volumetric, image, data, draw, region, fMRI, analysis, morphology, is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
has parent organization: Neuromorphometrics
NIMH R43 MH084358;
NIMH R43 MH60507;
NIMH R44 MH60507
THIS RESOURCE IS NO LONGER IN SERVICE nlx_149080 http://www.nitrc.org/projects/nvm SCR_000600 2026-09-12 12:55:12 0
Africa Centre Biobank
 
Resource Report
Resource Website
Africa Centre Biobank (RRID:SCR_000638) Africa Centre Biobank data or information resource, portal, topical portal THIS RESOURCE IS NO LONGER IN SERVICE, documented November 30, 2015. Extensive collection of biological specimens of various kinds that are mostly collected from the population around the Africa Centre in northern KwaZulu-Natal, but there are also specimens collected from populations in and around Durban and elsewhere in KwaZulu-Natal. The results of tests carried out on these specimens are generally stored in the main databases of the various studies involved, and are linkable back to the demographic and other data collected from the individuals concerned. The Biobank is curated by staff of the Africa Centre's Virology Laboratory in Durban, where all the specimens are currently stored, mostly in -80C freezers. A particular strength of its holdings are the dried blood spot (DBS), specimens five drops of blood on a filter-paper card, obtained via a finger-prick - of which there are now nearly 115,000. The following is a list of its holdings (May 2011): * 67,700 DBS specimens collected since late 2002 primarily for HIV prevalence estimation of the population covered by the Africa Centre Demographic Surveillance population. All have at least been tested for HIV, and just over 21% give a Positive result. Specimens are collected annually, so for some individuals we might have a sequence of 8-10 specimens covering 2002-2011. * 36,601 DBS specimens collected by the Vertical Transmission Study (VTS) between Sep 2001 and Dec 2006. This study focussed on mother-child pairs and investigated the vertical transmission of HIV from mother to child. DBS specimens were collected from both the mothers (at initial screening, and then from their children at Birth, 6, 10, 14, 18, 22 weeks, and 7, 8, 9, 12, 15, 18, 21 and 24 months. * 6,585 DBS specimens collected as part of the KZN IMPACT study of PMTCT effectiveness in six districts of kwaZulu-Natal. The specimens were collected during 2004-2006 from infants aged 4-8 weeks when mothers brought them to clinics for immunisation. These DBS specimens are stored at room temperature, not in freezers. * 3,524 DBS specimens collected as part of the Kesho Bora study from Sep 2007 . They were collected from mothers at enrollment, and from the infants at delivery, 2 weeks, and at 4, 5, 7, 8 and 15 months. * 50,068 Plasma specimens * 28,775 breastmilk specimens * 11,277 breastmilk products (Pellets and lactoserum). These have all been extracted from the BM specimens in prev. item? * 11,188 RNA and DNA products extracted from DBS and plasma specimens from all our major studies. * 5,735 Serum specimens * 3,505 cell pellets * 1,778 whole blood specimens * 1,284 Peripheral Blood Mononuclear Cells from the Kesho Bora study mothers (665) and their children (619) * 179 skin tissue specimens from the KST study (Kaposi's Sarcoma) * 176 foreskins mother, child, adult, pediatric, newborn, hiv transmission, dried blood spot, plasma, breastmilk, breastmilk product, rna, dna, serum, cell pellet, blood, peripheral blood mononuclear cell, skin tissue, foreskin, nutrition, resistance, demographic data, data is listed by: One Mind Biospecimen Bank Listing
has parent organization: University of KwaZulu-Natal; Durban; South Africa
HIV THIS RESOURCE IS NO LONGER IN SERVICE nlx_152011 SCR_000638 Africa Center Biobank, Africa Centre for Health and Population Studies Biobank 2026-09-12 12:55:12 0
Computational Cancer Genomics Group
 
Resource Report
Resource Website
1+ mentions
Computational Cancer Genomics Group (RRID:SCR_000772) data analysis software, data or information resource, data processing software, database, software application, software resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. The Computational Cancer Genomics (CCG) group is dedicated to the development of analysis tools and databases relating molecular sequences and biological functions. Sponsors: This group is supported by the Swiss Institute of Bioinformatics (SIB). eukaryotic, expression, function, gene, analyzer, annotation, biological, clustering, computational, data, genome, in vitro, mapping, messengerrna, molecular, mpss, mrna, one-dimensional, organism, promoter, sage, sequence, snp, software, tag, technology, tool, transcription, transcriptome has parent organization: SIB Swiss Institute of Bioinformatics THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-25561 SCR_000772 CCG 2026-09-12 12:55:14 3
DHS Program
 
Resource Report
Resource Website
50+ mentions
DHS Program (RRID:SCR_000905) data or information resource, database, group, training resource A program that provides technical assistance for surveys that aim to advance global understanding of health and population trends in developing countries. The DHS program collects, analyzes, and disseminates accurate and representative data on population, health, HIV, and nutrition through more than 300 surveys in over 90 countries. survey, global, health, population, trends, developing, countries, data, hiv, nutrition, FASEB list has parent organization: USAID nlx_156927 SCR_000905 The Demographic and Health Surveys Program 2026-09-12 12:55:16 92
DANS
 
Resource Report
Resource Website
1+ mentions
DANS (RRID:SCR_000904) DANS nonprofit organization Netherlands institute for permanent access to digital research resources. DANS encourages researchers to make their digital research data findable, accessible, interoperable and reusable. It does this by providing expert advice and certified services. data, archive, reuse, training, humanities, social science, archaeology, research, international is listed by: DataCite
works with: Mendeley Data
nlx_156902, grid.500519.8, Wikidata: Q13570995, ISNI: 0000 0001 2179 2789, DOI:10.17026 https://ror.org/008pnp284, https://doi.org/10.17026/, https://dx.doi.org/10.17026/ SCR_000904 EASY, Data Archiving and Networked Services 2026-09-12 12:55:16 1
HED Tags
 
Resource Report
Resource Website
1+ mentions
HED Tags (RRID:SCR_014074) HED data or information resource, narrative resource, standard specification Strategy guide for HED Annotation. Framework for systematically describing laboratory and real world events.HED tags are comma separated path strings. Organized in forest of groups with roots Event, Item, Sensory presentation, Attribute, Action, Participant, Experiment context, and Paradigm. Used for preparing brain imaging data for automated analysis and meta analysis. Applied to brain imaging EEG, MEG, fNIRS, multimodal mobile brain or body imaging, ECG, EMG, GSR, or behavioral data. Part of Brain Imaging Data Structure standard for brain imaging. Data, structure, standard, EEG, brain, imaging, comma, separated, path, string, analysis, MEG, fNIRS, multimodal, ECG, EMG, GSR, behavioral, BRAIN Initiative is used by: NIMH Data Archive
is used by: HeadIT
is used by: OpenNeuro
is recommended by: BRAIN Initiative
has parent organization: University of California at San Diego; California; USA
Army Research Laboratory Cooperative Agreement ;
NIMH R01MH084819;
NINDS R01 NS047293;
Swartz Foundation
PMID:27799907 Free, Freely available SCR_017630 SCR_014074 Hierarchical Event Descriptor Tags, Hierarchical Event Descriptor, HED, HED tags 2026-09-12 12:58:11 8
Skyline
 
Resource Report
Resource Website
1000+ mentions
Skyline (RRID:SCR_014080) data analysis software, data processing software, software application, software resource Software tool as Windows client application for targeted proteomics method creation and quantitative data analysis. Open source document editor for creating and analyzing targeted proteomics experiments. Used for large scale quantitative mass spectrometry studies in life sciences. Proteomics, SRM, MRM, DDA, DIA, shotgun, mass, spectrometry, data, analysis, quantitative uses: MSstats
is related to: ProteoWizard
has parent organization: University of Washington; Seattle; USA
works with: PanoramaWeb
NCI U24 CA126479;
NCRR P41 RR011823;
NHLBI R01 HL082747;
NIA P30 AG013280;
NIDDK R01 DK069386
PMID:20147306 Free, Available for download, Freely available SCR_014080 2026-09-12 12:58:12 3040
Origin
 
Resource Report
Resource Website
10000+ mentions
Origin (RRID:SCR_014212) data analysis software, data processing software, data visualization software, software application, software resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented on December 4, 2025.Software application for data analysis and graphing. Origin contains a variety of different graph types, including statistical plots, 2D and 3D vector graphs, and counter graphs. More advance version is OriginPro which offers advanced analysis tools and Apps for Peak Fitting, Surface Fitting, Statistics and Signal Processing. data, analysis, software, authoring, tool, scripting, graphing, statistical, publication is listed by: SoftCite
is related to: OriginPro
THIS RESOURCE IS NO LONGER IN SERVICE SCR_015636 https://www.originlab.com/index.aspx?go=PRODUCTS&PID=1834 SCR_014212 OriginPro 2026-09-12 12:58:13 13985
T1D Exchange
 
Resource Report
Resource Website
10+ mentions
T1D Exchange (RRID:SCR_014532) commercial organization Provides access to resources T1D researchers need to conduct clinical studies. Data sets from their clinic registry is openly available, as are new study results. They also offer use of T1D Discovery Tool, which allows users to search different fields from registry data, and T1D Exchange Biobank, which offers specimen types such as serum, plasma, white blood cells, DNA, and RNA. portal, dataset, type 1 diabetes, t1d, clinical, study, registry, data is listed by: NIDDK Information Network (dkNET)
is related to: Type 1 Diabetes Knowledge Portal
is parent organization of: T1D Exchange Biobank
Type 1 diabetes, Diabetes grid.461811.b https://ror.org/016jvas21 SCR_014532 T1D Exchange Inc. 2026-09-12 12:58:18 12
FactoMineR
 
Resource Report
Resource Website
1000+ mentions
FactoMineR (RRID:SCR_014602) data analysis software, data processing software, software application, software resource Software R package for multivariate analysis which takes into account different types of data structure. Data can be organized in groups of variable, groups of individuals, or into hierarchy of variables. multivariate, analysis, data, structure, organized, group, variable, individual, hierarchy is used by: ClustVis
is listed by: CRAN
https://cran.r-project.org/web/packages/FactoMineR/index.html, https://github.com/husson/FactoMineR SCR_014602 factominer 2026-09-12 12:58:19 2608
TIDA
 
Resource Report
Resource Website
50+ mentions
TIDA (RRID:SCR_014582) data acquisition software, data processing software, software application, software resource A software which is used to acquire physiological data from the HEKA Patch Clamp Amplifiers and HEKA interfaces. data acquisition, heka, patch clamp, heka interface, physiological, data, acquisition software Open source, Paired with a commercial product SCR_014582 2026-09-12 12:58:18 97
Sanford Burnham Prebys Medical Discovery Institute Bioinformatics and Data Management Facility
 
Resource Report
Resource Website
Sanford Burnham Prebys Medical Discovery Institute Bioinformatics and Data Management Facility (RRID:SCR_014868) SBP MDI Bioinformatics and Data Management Facility, SBP Medical Discovery Institute Bioinformatics and Data Management Facility, SBP MDI Bioinformatics and Data Management Facility access service resource, computational hosting, core facility, group, service resource, software resource, training core facility THIS RESOURCE IS NO LONGER IN SERVICE. Documented on 11132025. Facility that provides database development and management and bioinformatic network building services by utilizing on-site hardware and software. Three members of the facility are available to assist researchers with advanced bioinformatics and biostatistics analysis to help put data into biological context across various disease areas to create testable hypotheses and understand biology of the process. The bulk of support includes connecting functional genomic data with pathways and networks, connecting gene/protein expression and disease state and consultations on statistical aspects of the research with the team statistician. data, management, database, bioinformatic, network, connectivity, statistics, analysis, biostatistics, pipeline, software THIS RESOURCE IS NO LONGER IN SERVICE. SCR_014868 SBP, , Data Management Facility, MDI, Medical Discovery Institute, Sanford Burnham Prebys, Bioinformatics 2026-09-12 12:58:22 0
Wellcome Trust Sanger Institute; Hinxton; United Kingdom
 
Resource Report
Resource Website
500+ mentions
Wellcome Trust Sanger Institute; Hinxton; United Kingdom (RRID:SCR_011784) WTSI, Sanger institution Non profit research organization for genome sequences to advance understanding of biology of humans and pathogens in order to improve human health globally. Provides data which can be translated for diagnostics, treatments or therapies including over 100 finished genomes, which can be downloaded. Data are publicly available on limited basis, and provided more extensively upon request. research, genome, sequence, human, health, project, global, data, treatment, therapy is listed by: re3data.org
is affiliated with: Open Targets
is related to: Clonalframe
is related to: ClonalOrigin
is related to: TraCeR
is parent organization of: ILLUMINUS
is parent organization of: ARNIE
is parent organization of: Sequence Search and Alignment by Hashing Algorithm
is parent organization of: Sequencing of Idd regions in the NOD mouse genome
is parent organization of: CAROL
is parent organization of: DINDEL
is parent organization of: Wellcome Trust Case Control Consortium
is parent organization of: OLORIN
is parent organization of: Exomiser
is parent organization of: COSMIC - Catalogue Of Somatic Mutations In Cancer
is parent organization of: GeneDB
is parent organization of: Breast Cancer Somatic Genetics Study
is parent organization of: Artemis: Genome Browser and Annotation Tool
is parent organization of: ACT: Artemis Comparison Tool
is parent organization of: Alien hunter
is parent organization of: Pfam
is parent organization of: DNAPlotter
is parent organization of: VAGrENT
is parent organization of: SMALT
is parent organization of: LookSeq
is parent organization of: ZMP
is parent organization of: Deciphering Developmental Disorders
is parent organization of: Sanger Mouse Resources Portal
is parent organization of: SpliceDB
is parent organization of: DECIPHER
is parent organization of: 1000 Genomes: A Deep Catalog of Human Genetic Variation
is parent organization of: Genes to Cognition: Neuroscience Research Programme
is parent organization of: MEROPS
is parent organization of: Rfam
is parent organization of: VEGA
is parent organization of: Bacterial Genomes
is parent organization of: Caenorhabditis Genome Sequencing Projects
is parent organization of: D. rerio Blast Server
is parent organization of: Fungi Sequencing Projects
is parent organization of: PEER
is parent organization of: Alfresco - FRont-End for Sequence COmparison
is parent organization of: AutoCSA (Automatic Comparative Sequence Analysis)
is parent organization of: AceDB
is parent organization of: CnD
is parent organization of: Genomics of Drug Sensitivity in Cancer
is parent organization of: Zebrafish Genome Project
is parent organization of: Tree families database
is parent organization of: Ensembl
is parent organization of: BamView
is parent organization of: SVMerge
is parent organization of: RetroSeq
is parent organization of: Consensus CDS
is parent organization of: WormBase
is parent organization of: Belvu
is parent organization of: Bio-tradis
is parent organization of: Blixem
is parent organization of: Dotter
is parent organization of: Exonerate
is parent organization of: Fastaq
is parent organization of: Gubbins
is parent organization of: CellPhoneDB
is parent organization of: Ensembl Metazoa
is parent organization of: Scmap
is parent organization of: Scfind
is parent organization of: Recognition of Errors in Assemblies using Paired Reads
is parent organization of: SAMTOOLS
is parent organization of: Cell Model Passports
Wellcome Trust ISNI: 0000 0004 0606 5382, nlx_91258, grid.10306.34, Wikidata: Q1142544 https://ror.org/05cy4wa09 SCR_011784 Wellcome Trust Sanger Institute, Genome Research Limited, The Wellcome Sanger Institute, Sanger Institute, Wellcome Trust Sanger Institute Genome Research Limited 2026-09-12 12:57:39 543
eQTL Visualization Tool
 
Resource Report
Resource Website
1+ mentions
eQTL Visualization Tool (RRID:SCR_013413) data processing software, data visualization software, software application, software resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented on June 1,2023. eQTL Explorer was developed as a computational resource to visualize and explore data from combined genome-wide expression and linkage studies is essential for the development of testable hypotheses. This visualization tool stores expression profiles, linkage data and information from external sources in a relational database and enables simultaneous visualization and intuitive interpretation of the combined data via a Java graphical interface. eQTL Explorer also provides a new and powerful tool to interrogate these very large and complex datasets. eQTLexplorer allows users to mine and understand data from a repository of genetical genomics experiments. It will graphically display eQTL information based on a certain number of selection criteria, including: tissue type, p-value, cis/trans, probeset Affymetrix id and PQTL type. Sponsors: This work was funded by the MRC Clinical Sciences Centre and the Wellcome Trust programme for Cardiovascular Functional Genomics. experiment, explore, expression, genome, genetic, genetical, cis, computational, data, database, genomic, grafical, interface, linkage, mine, pqtl type, p-value, repository, tissue, tissue type, trans, visualization, visualize THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-10222 SCR_013413 eQTLexplorer 2026-09-12 12:58:03 1
miRDeep
 
Resource Report
Resource Website
100+ mentions
miRDeep (RRID:SCR_010829) miRDeep2 data analysis software, data processing software, sequence analysis software, software application, software resource Software tool to identify known and novel miRNA genes in seven animal clades by analyzing sequenced RNAs. Used for discovering known and novel miRNAs from small RNA sequencing data. miRNA, gene, animal, clade, analysis, sequence, RNA, data is listed by: OMICtools China Scholarship Council ;
German Ministry of Education and Research ;
Helmholtz Association ;
Helmholtz-Alliance on Systems Biology ;
Max Delbrück Centrum Systems Biology Network ;
Senate of Berlin
PMID:18392026
PMID:21911355
Free, Available for download, Freely available OMICS_00373 https://github.com/rajewsky-lab/mirdeep2 SCR_010829 2026-09-12 12:57:24 182
Mainz Institute of Molecular Biology Bioinformatics Core Facility
 
Resource Report
Resource Website
1+ mentions
Mainz Institute of Molecular Biology Bioinformatics Core Facility (RRID:SCR_011244) Fraunhofer IME, IMB institution Provides assistance with consulting on experimental design, training on bioinformatics tools and databases, data quality assessment, data processing, data visualization, data interpretation, data mining of published datasets, and assistance with preparation of manuscripts and grant proposals. bioinformatics, data, quality assessment, processing, visualization, interpretation, mining, consulting is related to: Pharma-Planta Consortium
has parent organization: Fraunhofer-Gesellschaft
is parent organization of: Pharma-Planta Consortium
is parent organization of: European ScreeningPort
open ISNI: 0000 0004 0573 9904, grid.418010.c, nlx_158283, Wikidata: Q1452021 https://ror.org/03j85fc72 SCR_011244 Fraunhofer-Institut f�r Molekularbiologie und Angewandte Oekologie IME, Fraunhofer Institute for Molecular Biology and Applied Ecology IME, Fraunhofer-Institut fur Molekularbiologie und Angewandte Oekologie IME, Fraunhofer Institute for Molecular Biology and Applied Ecology 2026-09-12 12:57:31 1
The Immunology Database and Analysis Portal (ImmPort)
 
Resource Report
Resource Website
1000+ mentions
The Immunology Database and Analysis Portal (ImmPort) (RRID:SCR_012804) ImmPort controlled vocabulary, data or information resource, data repository, database, disease-related portal, ontology, portal, service resource, storage service resource, topical portal Data sharing repository of clinical trials, associated mechanistic studies, and other basic and applied immunology research programs. Platform to store, analyze, and exchange datasets for immune mediated diseases. Data supplied by NIAID/DAIT funded investigators and genomic, proteomic, and other data relevant to research of these programs extracted from public databases. Provides data analysis tools and immunology focused ontology to advance research in basic and clinical immunology. immunology, basic, clinical, data, share, store, analyze, exchange, dataset, immune, mediated, disease, analysis, tool, FASEB list is recommended by: National Library of Medicine
is recommended by: NIDDK Information Network (dkNET)
is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
is listed by: NIDDK Research Resources
is affiliated with: Cytokine Registry
is related to: MetaCyto
is related to: The 10000 Immunomes
is related to: NIAID
Immune mediated disease DAIT ;
NIAID ;
NIAID HHSN266200400076C;
NIAID HHSN272201200028C;
NIH
PMID:24791905 nlx_152691, r3d100012529 http://www.immport.org/immport-open/public/home/home, http://www.immport.org/ http://www.immport.org SCR_012804 Immunology Data and Analysis Portal, ImmPort system, ImmPort, Immunology Database and Analysis Portal 2026-09-12 12:57:53 1383
PICS
 
Resource Report
Resource Website
1+ mentions
PICS (RRID:SCR_001093) data analysis software, data processing software, sequence analysis software, software application, software resource R package with tools that use probabilistic inference of ChIP-Seq. It follows an empirical Bayes mixture model approach. chip seq, bayes, data, r, sequence analysis software is listed by: OMICtools
is hosted by: Bioconductor
PMID:20528864 Free, Available for download, Freely available OMICS_00455 SCR_001093 Probabilistic inference of ChIP-seq 2026-09-12 01:00:07 3
ImageJ
 
Resource Report
Resource Website
10000+ mentions
ImageJ (RRID:SCR_003070) data processing software, image analysis software, image processing software, software application, software resource, software toolkit Open source Java based image processing software program designed for scientific multidimensional images. ImageJ has been transformed to ImageJ2 application to improve data engine to be sufficient to analyze modern datasets. image, data, processing, analysis, datasets, visualization, uses: NeuriteTracer
is used by: Mouse Behavioral Analysis Toolbox
is used by: Focinator
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is listed by: Debian
is listed by: SoftCite
is related to: uManager
is related to: Fiji
is related to: NIH Image
is related to: TrakEM2
is related to: BioVoxxel Toolbox
is related to: Golddigger
is related to: Analyze Complex Roots Tool
is related to: Analyze Spheroid Cell Invasion In 3D Matrix
is related to: PyImageJ
has parent organization: Research Services Branch National Institutes of Mental Health
has plug in: Diffusing Tensor Imaging in Java
has plug in: OrientationJ
has plug in: GRatio for ImageJ
has plug in: BioVoxxel Toolbox
has plug in: WormSizer
has plug in: MultiStackReg
has plug in: Iterative Deconvolve 3D
has plug in: Thunder STORM
has plug in: Whisker tracking macro
has plug in: 3D Roi Manager
has plug in: 3D Objects Counter
has plug in: BoneJ
has plug in: QuickFigures
has plug in: ObjectJ
has plug in: ADAPT
has plug in: DHM Utilities
has plug in: Sholl Analysis
has plug in: nTracer
has plug in: IHC Profiler
has plug in: MicrobeJ
has plug in: AccPbFRET
has plug in: RiFRET
has plug in: JaCoP
has plug in: Cell Counter Plugin for ImageJ
has plug in: Puncta Analyzer
has plug in: SpinalJ
has plug in: ColonyArea
works with: Intensity Ratio Nuclei Cytoplasm Tool
works with: 3D ImageJ Suite
works with: Wound Healing Tool
works with: MorphoLibJ
NIGMS RC2 GM092519;
NIH ;
NIMH ;
NINDS ;
the Laboratory for Optical and Computational Instrumentation ;
the Morgridge Institute for Research ;
Wellcome Trust Strategic Award 095931
PMID:22930834
PMID:29187165
DOI:10.1038/nmeth.2089
Free, Available for download, Freely available ascl:1206.013, rid_000070, Q1659584, 2012ascl.soft06013R, SCR_018407, nif-0000-30467 https://imagej.net/ij/, http://rsbweb.nih.gov/ij, https://imagej.nih.gov/ij/download.html, https://imagej.nih.gov/ij/, https://sources.debian.org/src/imagej/, https://imagej.nih.gov/ij/, http://www.nitrc.org/projects/incf_imagej, SCR_003070 Image J, ImageJ - Image Processing and Analysis in Java, ImageJ2, ImageJ 2026-09-12 01:00:09 29025

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