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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Global Proteome Machine Database (GPM DB) Resource Report Resource Website 100+ mentions |
Global Proteome Machine Database (GPM DB) (RRID:SCR_006617) | The GPM | database, data repository, data processing software, storage service resource, data or information resource, data analysis software, software application, software resource, service resource | The Global Proteome Machine Organization was set up so that scientists involved in proteomics using tandem mass spectrometry could use that data to analyze proteomes. The projects supported by the GPMO have been selected to improve the quality of analysis, make the results portable and to provide a common platform for testing and validating proteomics results. The Global Proteome Machine Database was constructed to utilize the information obtained by GPM servers to aid in the difficult process of validating peptide MS/MS spectra as well as protein coverage patterns. This database has been integrated into GPM server pages, allowing users to quickly compare their experimental results with the best results that have been previously observed by other scientists. | mass spectrometry, pattern, peptide, protein, proteome, scientist, spectra, tandem, FASEB list |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases |
r3d100010883, nif-0000-10455 | https://www.thegpm.org/GPMDB/index.html, https://researchdata.ands.org.au/gpm-global-proteome-machine-database/11342, https://doi.org/10.17616/R30C90 | SCR_006617 | GPM, The Global Proteome Machine Organization: Proteomics Database and Open Source Software, Global Proteome Machine Database, GPM DB, The Global Proteome Machine Database, The Global Proteome Machine, Global Proteome Machine Database (GPM DB), The Global Proteome Machine Organization | 2026-08-15 11:23:25 | 282 | |||||||
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PeptideAtlas Resource Report Resource Website 500+ mentions |
PeptideAtlas (RRID:SCR_006783) | PeptideAtlas | database, data repository, storage service resource, data or information resource, service resource | Multi-organism, publicly accessible compendium of peptides identified in a large set of tandem mass spectrometry proteomics experiments. Mass spectrometer output files are collected for human, mouse, yeast, and several other organisms, and searched using the latest search engines and protein sequences. All results of sequence and spectral library searching are subsequently processed through the Trans Proteomic Pipeline to derive a probability of correct identification for all results in a uniform manner to insure a high quality database, along with false discovery rates at the whole atlas level. The raw data, search results, and full builds can be downloaded for other uses. All results of sequence searching are processed through PeptideProphet to derive a probability of correct identification for all results in a uniform manner ensuring a high quality database. All peptides are mapped to Ensembl and can be viewed as custom tracks on the Ensembl genome browser. The long term goal of the project is full annotation of eukaryotic genomes through a thorough validation of expressed proteins. The PeptideAtlas provides a method and a framework to accommodate proteome information coming from high-throughput proteomics technologies. The online database administers experimental data in the public domain. You are encouraged to contribute to the database. | proteomics, peptide, mass spectrometry, annotation, eukaryotic, genome, peptide sequence, high-throughput mass spectrometry, ensembl, peptideprophet, protein sequence, blood plasma, protein, eukaryotic cell, dna, bio.tools, FASEB list |
is used by: NIF Data Federation is used by: ProteomeXchange is recommended by: NIDDK Information Network (dkNET) is recommended by: National Library of Medicine is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: Biositemaps is listed by: re3data.org is listed by: bio.tools is listed by: Debian is related to: Ensembl is related to: ProteomeXchange is related to: NIH Data Sharing Repositories is related to: Integrated Manually Extracted Annotation has parent organization: Institute for Systems Biology; Washington; USA |
NCI ; NHGRI ; NIGMS |
PMID:20013378 PMID:23215161 PMID:16381952 PMID:15642101 |
Public, The community can contribute to this resource, Acknowledgement requested | nif-0000-03266, r3d100010889, biotools:peptideatlas | https://bio.tools/peptideatlas, https://doi.org/10.17616/R3BK61 | SCR_006783 | Peptide Atlas, PeptideAtlas | 2026-08-15 11:23:27 | 511 | ||||
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MetaboLights Resource Report Resource Website 500+ mentions |
MetaboLights (RRID:SCR_014663) | database, data repository, storage service resource, data or information resource, service resource | A cross-species, cross-technique database for metabolomics experiments, data, and derived information. It includes metabolite structures and their reference spectra, their biological roles, locations and concentrations, and experimental data from metabolic experiments. | metabolomics, database, structure, spectra, experimental data |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: Metabolomics Workbench |
BBSRC BB/L024152/1 | Publicly available, The community can contribute to this resource | r3d100011556 | SCR_014663 | MetaboLights | 2026-08-15 11:25:09 | 889 | |||||||
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Coherent X-Ray Imaging Data Bank (CXIDB) Resource Report Resource Website 10+ mentions |
Coherent X-Ray Imaging Data Bank (CXIDB) (RRID:SCR_014722) | CXIDB | database, data repository, storage service resource, data or information resource, service resource | Database of Coherent X-ray Imaging (CXI) experiments. This data is widely accessible to researchers worldwide. | coherent xray imaging, cxi, experiment, database, reproducibility |
uses: DataCite is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases |
Available to the research community | DOI:10.11577, r3d100011554 | https://doi.org/10.11577/, https://dx.doi.org/10.11577/ | SCR_014722 | Coherent X-ray Imaging Data Bank (CXIDB), CXIDB, Coherent X-ray Imaging Data Bank | 2026-08-15 11:24:52 | 23 | ||||||
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Johns Hopkins University; Maryland; USA Resource Report Resource Website 10+ mentions |
Johns Hopkins University; Maryland; USA (RRID:SCR_010247) | JHU | university | Johns Hopkins University is private research university in Baltimore, Maryland. Founded in 1876, university was named for its first benefactor, American entrepreneur, abolitionist, and philanthropist Johns Hopkins. | private, university, Baltimore, Maryland |
uses: DIRECT2experts is affiliated with: Diabetes Research Centers is related to: Alzheimers Disease Genetics Consortium is related to: International AMD Genetics Consortium is related to: ABX Guide is related to: Clinical and Translational Science Awards Consortium is parent organization of: SynaptomeDB is parent organization of: Johns Hopkins University School of Medicine; Baltimore, Maryland; USA is parent organization of: sim4cc is parent organization of: MRI Studio is parent organization of: CKID A Prospective Cohort Study of Kidney Disease in Children is parent organization of: Nonalcoholic Steatohepatitis Clinical Research Network is parent organization of: ASprofile is parent organization of: GlimmerHMM is parent organization of: Neurogenetics and Behavior Center is parent organization of: Human Proteinpedia is parent organization of: Schramm Lab Spinal Cord Atlases is parent organization of: NetPath is parent organization of: Academic Drug Discovery Consortium is parent organization of: CardioVascular Research Grid (CVRG) is parent organization of: Johns Hopkins University; Undergraduate Neuroscience Program is parent organization of: Bowtie is parent organization of: FLASH is parent organization of: TMAJ is parent organization of: Gastroparesis Clinical Research Consortium is parent organization of: HPRD - Human Protein Reference Database is parent organization of: Atlweb: Alternatives to Animal Testing is parent organization of: Center for Inherited Disease Research is parent organization of: The Protein Coil Library is parent organization of: HIV Guide is parent organization of: Johns Hopkins School of Medicine Department of Molecular and Comparative Pathobiology is parent organization of: Classic Articles in Visual Perception is parent organization of: Experimental Man Blog is parent organization of: MYC Cancer Gene is parent organization of: JIST: Java Image Science Toolkit is parent organization of: DOTS WM tract segmentation is parent organization of: JHU Proj. in Applied Medical Imaging is parent organization of: LDDMM is parent organization of: Johns Hopkins Bloomberg School of Public Health; Maryland; USA is parent organization of: Genetic Resources Core Facility is parent organization of: LS-SNP/PDB is parent organization of: JHU Deep Sequencing and Microarray Core is parent organization of: Glimmer is parent organization of: Johns Hopkins University Labs and Facilities is parent organization of: CRAVAT is parent organization of: John Hopkins University, In-Vivo Cellular Molecular Imaging Center is parent organization of: RosettaDock is parent organization of: CoGAPS is parent organization of: Blox is parent organization of: National Resource for Quantitative Functional MRI is parent organization of: Myrna is parent organization of: CAWorks is parent organization of: Principal Components Analysis of Scalar, Vector, and Mesh Vertex Data is parent organization of: Longitudinal MS Lesion Imaging Archive is parent organization of: Image Synthesis Tools is parent organization of: Atlases of amygdala and hippocampus for pediatric populations is parent organization of: HISAT2 is parent organization of: neurodata is parent organization of: Johns Hopkins University Integrated Imaging Center Core Facility is parent organization of: Center for Computational Biology at JHU is parent organization of: TopHat is parent organization of: PyRosetta is parent organization of: Ecosystem for Multi-modal Brain-behavior Experimentation and Research is parent organization of: Brain Observatory Storage Service and Database (BossDB) is parent organization of: Johns Hopkins University School of Medicine Genetic Resources Core Facility |
nlx_97251, , Wikidata: Q193727, GRID: grid.21107.35, ISNI: 0000 0001 2171 931, Crossref Funder ID: 100007880 | https://ror.org/00za53h95 | SCR_010247 | 2026-08-15 11:24:02 | 21 | ||||||||
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AbbVie Resource Report Resource Website 500+ mentions |
AbbVie (RRID:SCR_010484) | ABBV | commercial organization | A research-based biopharmaceutical company that develops advanced therapies to address global health problems. | pharmaceutical, advanced therapy, biopharmaceutical, research, global health, commercial organization |
is related to: Kidney Health Initiative is related to: Structural Genomics Consortium is related to: Alzheimers Association Research Roundtable is related to: Abbott is related to: Abbott is related to: NEWMEDS is related to: ORBITO is related to: PREDECT |
nlx_158067, grid.472726.2 | https://ror.org/024e28c54 | SCR_010484 | AbbVie Inc., AbbVie Deutschland GmbH & Co KG, AbbVie Deutschland GmbH and Co KG | 2026-08-15 11:24:04 | 916 | |||||||
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All India Institute of Medical Sciences; New Delhi; India Resource Report Resource Website 1+ mentions |
All India Institute of Medical Sciences; New Delhi; India (RRID:SCR_011091) | AIIMS | institution | An autonomous institution established through an Act of Parliament to serve as a nucleus for nurturing excellence in all aspects of health care. The object was to develop patterns of teaching in Undergraduate and Post-graduate Medical Education in all its branches so as to demonstrate a high standard of Medical Education in India; to bring together in one place educational facilities of the highest order for the training of personnel in all important branches of health activity; and to attain self-sufficiency in Post-graduate Medical Education. The Institute has comprehensive facilities for teaching, research and patient-care. As provided in the Act, AIIMS conducts teaching programs in medical and para-medical courses both at undergraduate and postgraduate levels and awards its own degrees. Teaching and research are conducted in 42 disciplines. In the field of medical research AIIMS is the lead, having more than 600 research publications by its faculty and researchers in a year. AIIMS also runs a College of Nursing and trains students for B.Sc.(Hons.) Nursing post-certificate) degrees. Twenty-five clinical departments including four super specialty centers manage practically all types of disease conditions with support from pre- and Para-clinical departments. However, burn cases, dog-bite cases and patients suffering from infectious diseases are not entertained in the AIIMS Hospital. AIIMS also manages a 60-bed hospital in the Comprehensive Rural Health Centre at Ballabgarh in Haryana and provides health cover to about 2.5 lakh population through the Centre for Community Medicine. |
is related to: Kidney Health Initiative has parent organization: Ministry of Health and Family Welfare - Government of India |
nlx_158396 | SCR_011091 | AIIMS New Delhi, All India Institute of Medical Sciences, All-India Institute of Medical Sciences, All India Institute of Medical Sciences Delhi, AIIMS Delhi | 2026-08-15 11:24:15 | 9 | |||||||||
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Gene Expression Omnibus (GEO) Resource Report Resource Website 10000+ mentions |
Gene Expression Omnibus (GEO) (RRID:SCR_005012) | GEO | database, data repository, storage service resource, data or information resource, service resource | Functional genomics data repository supporting MIAME-compliant data submissions. Includes microarray-based experiments measuring the abundance of mRNA, genomic DNA, and protein molecules, as well as non-array-based technologies such as serial analysis of gene expression (SAGE) and mass spectrometry proteomic technology. Array- and sequence-based data are accepted. Collection of curated gene expression DataSets, as well as original Series and Platform records. The database can be searched using keywords, organism, DataSet type and authors. DataSet records contain additional resources including cluster tools and differential expression queries. | gold standard, genomics, data, repository, microarray, mRNA, DNA, protein, analysis, SAGE, mass spectrometry, dataset |
is used by: ChIPseeker is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is related to: Allen Institute for Brain Science has parent organization: NCBI works with: shinyGEO works with: Drug Gene Budger works with: Signaling Pathways Project works with: GEN3VA |
National Library of Medicine | PMID:23193258 PMID:21097893 PMID:18940857 PMID:17160034 PMID:17099226 PMID:16939800 PMID:16888359 PMID:15608262 PMID:11752295 |
r3d100010283, nif-0000-00142, nlx_96903, OMICS_01030, SCR_007303 | http://www.ncbi.nlm.nih.gov/sites/entrez?db=gds, http://www.ncbi.nlm.nih.gov/geo/, https://doi.org/10.17616/R33P44 | http://www.ncbi.nlm.nih.gov/gds | SCR_005012 | Gene Expression Omnibus (GEO), Entrez GEO DataSets, Gene Expression Data Sets, Gene Expression Omnibus, GEO, NCBI GEO DataSets, GEO DataSets, Gene Expression Omnibus DataSets | 2026-08-15 11:27:09 | 14348 | ||||
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ProteomeXchange Resource Report Resource Website 5000+ mentions |
ProteomeXchange (RRID:SCR_004055) | database, data repository, storage service resource, portal, data or information resource, consortium, service resource, catalog, organization portal | A data repository for proteomic data sets. The ProteomeExchange consortium, as a whole, aims to provide a coordinated submission of MS proteomics data to the main existing proteomics repositories, as well as to encourage optimal data dissemination. ProteomeXchange provides access to a number of public databases, and users can access and submit data sets to the consortium's PRIDE database and PASSEL/PeptideAtlas. | consortium, database, proteomics, MS proteomics, protein, mass spectrometry, bio.tools, FASEB list |
uses: Proteomics Identifications (PRIDE) uses: PeptideAtlas is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: bio.tools is listed by: Debian is affiliated with: Omics Discovery Index is related to: Proteomics Identifications (PRIDE) is related to: PeptideAtlas is related to: SIB Swiss Institute of Bioinformatics is related to: Mass spectrometry Interactive Virtual Environment (MassIVE) is related to: European Bioinformatics Institute is related to: ProteomeTools is related to: Integrated Proteome Resources has parent organization: European Bioinformatics Institute |
European Union 260558 | Public, The community can contribute to this resource | r3d100012122, nlx_158620, biotools:proteomexchange | http://proteomecentral.proteomexchange.org, https://bio.tools/proteomexchange, https://doi.org/10.17616/R32D29 | SCR_004055 | , ProteomeXchange, Proteome Exchange | 2026-08-15 11:27:03 | 6107 | ||||||
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Rodent Operant Bucket project Resource Report Resource Website |
Rodent Operant Bucket project (RRID:SCR_021565) | project portal, data or information resource, portal, instrument resource | Portal for open source operant chamber, based on Arduino microcontroller platform, that can be used to train mice to respond for reward. Designed by NIDDK scientists.Apparatus contains two nose pokes, drinking well, and solenoid controlled sucrose delivery system. Chamber can run magazine training, fixed ratio and progressive ratio training schedules, and can be programmed to run more complicated behavioral paradigms. | Instrument, operant chamber, Arduino microcontroller platform, train mice, reward respond, OpenBehavior |
is listed by: OpenBehavior is related to: NIDDK- National Institute of Diabetes and Digestive and Kidney Diseases Obesity Resources is related to: Rodent Operant Bucket |
DOI:10.3758/s13428-015-0603-2 | Free, Freely available | SCR_021565 | Rodent Operant Bucket, ROBucket | 2026-08-15 11:26:51 | 0 | ||||||||
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PhysioNet Resource Report Resource Website 500+ mentions |
PhysioNet (RRID:SCR_007345) | PhysioNet | database, production service resource, data repository, storage service resource, data analysis service, data or information resource, service resource, analysis service resource | Collection of dissemination and exchange recorded biomedical signals and open-source software for analyzing them. Provides facilities for cooperative analysis of data and evaluation of proposed new algorithm. Providies free electronic access to PhysioBank data and PhysioToolkit software. Offers service and training via on-line tutorials to assist users at entry and more advanced levels. In cooperation with annual Computing in Cardiology conference, PhysioNet hosts series of challenges, in which researchers and students address unsolved problems of clinical or basic scientific interest using data and software provided by PhysioNet. All data included in PhysioBank, and all software included in PhysioToolkit, are carefully reviewed. Researchers are further invited to contribute data and software for review and possible inclusion in PhysioBank and PhysioToolkit. Please review guidelines before submitting material. | physiologic, physiology, signal, software, research, biomedical, cardiopulmonary, neural, healthy, patient, cardiac, death, congestive heart failure, epilepsy, gait, disorder, sleep apnea, cardioogy, computation, physiologic signal, workspace, time series, FASEB list, DRKB |
is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: DataCite is listed by: re3data.org is listed by: FAIRsharing has parent organization: Massachusetts Institute of Technology; Massachusetts; USA; is parent organization of: CHB-MIT Scalp EEG Database is parent organization of: EEG Motor Movement/Imagery Dataset is parent organization of: Sleep-EDF Database |
Aging | NIBIB ; NIGMS ; NIH EB037545 |
PMID:22256277 PMID:14716615 PMID:14632011 PMID:11446213 PMID:10851218 |
Free, Freely available | r3d100011561, nif-0000-00250, DOI:10.17616/R3D06S, DOI:10.25504/FAIRsharing.bemzxg, DOI:10.13026 | https://doi.org/10.17616/R3D06S, https://doi.org/10.17616/r3d06s, https://doi.org/10.13026/, https://dx.doi.org/10.13026/, https://fairsharing.org/10.25504/FAIRsharing.bemzxg, https://doi.org/10.17616/R3D06S | SCR_007345 | Physionet: The Research Resource for Complex Physiologic Signals, PhysioNet, PhysioNet: The Research Resource for Complex Physiologic Signals | 2026-08-15 11:27:07 | 841 | |||
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Centers for Diabetes Translation Research Resource Report Resource Website 1+ mentions |
Centers for Diabetes Translation Research (RRID:SCR_015149) | topical portal, portal, data or information resource, resource, disease-related portal, organization portal | Centers that are part of an integrated program whose cores support and enhance diabetes type II translation research. The CDTRs aim to enhance the efficiency, productivity, effectiveness and multidisciplinary nature of diabetes translation research. | diabetes type ii, diabetes research, translation |
is listed by: NIDDK Information Network (dkNET) is affiliated with: Vanderbilt Center for Diabetes Translation Research is affiliated with: New York Regional Center for Diabetes Translation Research is affiliated with: Chicago Center for Diabetes Translation Research is affiliated with: Georgia Center for Diabetes Translation Research is affiliated with: Michigan Center for Diabetes Translational Research is affiliated with: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases has organization facet: Chicago Center for Diabetes Translation Research has organization facet: New York Regional Center for Diabetes Translation Research has organization facet: Georgia Center for Diabetes Translation Research has organization facet: Health Delivery Systems Center for Diabetes Translational Research has organization facet: Michigan Center for Diabetes Translational Research has organization facet: Vanderbilt Center for Diabetes Translation Research has organization facet: Washington University Center for Diabetes Translation Research |
Diabetes | NIDDK P30RFA-DK15-003 | Available to the research community | SCR_015149 | 2026-08-15 11:27:11 | 1 | ||||||||
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George Washington University; Washington D.C.; USA Resource Report Resource Website 1+ mentions |
George Washington University; Washington D.C.; USA (RRID:SCR_011214) | GWU | university | Private research university in Washington, D.C. It was chartered in 1821 by an act of the United States Congress. |
is related to: National Chimpanzee Brain Resource is parent organization of: Genetics of Kidneys in Diabetes is parent organization of: Epidemiology of Diabetes Interventions and Complications is parent organization of: Diabetes Prevention Program is parent organization of: Diabetes Prevention Program Outcomes Study is parent organization of: Treatment Options for type 2 Diabetes in Adolescents and Youth is parent organization of: Medical Therapy of Prostatic Symptoms is parent organization of: George Washington University, Cognitive Neuroscience is parent organization of: George Washington University, Department of Pharmacology and Physiology is parent organization of: List Of Lists Annotated is parent organization of: George Washington University Medical Center Pharmacogenomics Program is parent organization of: SICER is parent organization of: BioXpress is parent organization of: George Washington University Milken Institute School of Public Health Genomics Core Facility is parent organization of: George Washington University McCormick Bioinformatics Core Facility |
grid.253615.6, nlx_31859, ISNI:0000 0004 1936 9510, Crossref funder ID:100007108, Wikidata:Q432637 | https://ror.org/00y4zzh67 | SCR_011214 | George Washington University | 2026-08-15 11:24:22 | 2 | ||||||||
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National Institute of Health and Medical Research; Rennes; France Resource Report Resource Website 10+ mentions |
National Institute of Health and Medical Research; Rennes; France (RRID:SCR_011404) | INSERM | institution | A public institution with a scientific and technical vocation under the dual auspices of the Ministry of Health and the Ministry of Research. It was created as a successor to the French National Institute of Health. INSERM consists of 339 research units, run by 6500 permanent staff members. Eighty percent of INSERM research units are embedded in research hospitals of French universities. |
is related to: PharmaCog is related to: International AMD Genetics Consortium is related to: EMIF is parent organization of: GermOnline is parent organization of: Inserm Transfert is parent organization of: AgedBrainSYSBIO is parent organization of: Human Splicing Finder is parent organization of: ClueGO is parent organization of: UMD-BRCA1/ BRCA2 databases is parent organization of: Orphanet is parent organization of: Gazel Database is parent organization of: ADJUST is parent organization of: Kidney and Urinary Pathway Knowledge Base is parent organization of: Cordelier Research Center |
Wikidata: Q1474517, nlx_88851, Crossref funder ID: 501100001677, ISNI: 121866389, grid.7429.8 | https://ror.org/02vjkv261 | SCR_011404 | Inserm | 2026-08-15 11:24:24 | 15 | ||||||||
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University of Washington; Seattle; USA Resource Report Resource Website 10+ mentions |
University of Washington; Seattle; USA (RRID:SCR_011749) | UW | university | University of Washington is public research university in Seattle, Washington. Has university campuses in Seattle, Tacoma and Bothell, academic medical center and professional and continuing education programs. | public, research, university, campus, medical, center |
uses: ReadCube uses: Scizzle is affiliated with: Diabetes Research Centers is related to: Kidney Health Initiative is related to: Alzheimers Disease Genetics Consortium is related to: Clinical and Translational Science Awards Consortium is related to: nbdocker is related to: Trail Technical Report Archive is related to: Urinary Stone Disease Research Network is related to: Seattle Alzheimer Disease Brain Cell Atlas is parent organization of: UW Department of Biochemistry is parent organization of: University of Washington Nath Research Group is parent organization of: CorQ is parent organization of: Maitreya Dunham's Lab is parent organization of: National ESCA and Surface Analysis Center for Biomedical Problems is parent organization of: Neurological Disorder Resources is parent organization of: BEAGLE is parent organization of: PolyPhred is parent organization of: Aging Genes and Interventions Database is parent organization of: Washington National Primate Research Center is parent organization of: Macaque.org is parent organization of: Primate Resource Referral Service is parent organization of: COnsensus-DEgenerate Hybride Oligonucleotide Primers is parent organization of: MindSeer is parent organization of: BrainInfo is parent organization of: FMA is parent organization of: Solstice is parent organization of: Foldit is parent organization of: Segway - a way to segment the genome is parent organization of: svmvia is parent organization of: qvality - Nonparametric estimation of posterior error probabilities is parent organization of: Charge Czar: Peptide charge state determination for low-resolution tandem mass spectra is parent organization of: BiblioSpec is parent organization of: Segtools is parent organization of: Genomedata is parent organization of: Language Map Experiment Management System is parent organization of: Philius is parent organization of: Patient-Reported Outcomes Measurement Information System is parent organization of: hyfi: software suite for binding site search is parent organization of: Percolator: Semi-supervised learning for peptide identification from shotgun proteomics datasets is parent organization of: Consed is parent organization of: PHYLIP is parent organization of: Metabolism and Transport Drug Interaction Database is parent organization of: SVM-fold: Protein Fold Prediction is parent organization of: MORGAN is parent organization of: Digital Anatomist Interactive Atlases Project is parent organization of: Rankprop - Protein Ranking by Network Propagation is parent organization of: Noble Research Lab is parent organization of: A statistical framework for genomic data fusion is parent organization of: National Alzheimer's Coordinating Center is parent organization of: NSR Physiome Project is parent organization of: University of Washington Seattle WA. Pharmacology is parent organization of: Decoys-R-Us is parent organization of: MPIM - Mitochondrial Protein Import Machinery is parent organization of: Yeast Resource Center is parent organization of: Foundational Model Explorer is parent organization of: Alcohol and Drug Abuse Institute, University of Washington is parent organization of: Eric H. Chundlers Links is parent organization of: UW Genome Sciences is parent organization of: LAMHDI: The Initiative to Link Animal Models to Human DIsease is parent organization of: University of Washington Alzheimers Disease Research Center is parent organization of: Sageweb is parent organization of: Laboratory of Phil Green at Univeristy of Washington is parent organization of: Genome Institue at Washington University is parent organization of: Crux tandem mass spectrometry analysis software is parent organization of: HMMSeg is parent organization of: GeneTests is parent organization of: Phylogeny Programs is parent organization of: NHLBI Grand Opportunity Exome Sequencing Project is parent organization of: NHLBI Exome Sequencing Project (ESP) is parent organization of: Francisella tularensis Genome Research is parent organization of: Alcohol and Drug Abuse Institute (ADAI) Library: Alcohol, Drugs and Tobacco Web Links is parent organization of: L2L Microarray Analysis Tool is parent organization of: CELL- PREVEN Project is parent organization of: TM4 Microarray Software Suite - TIGR MultiExperiment Viewer is parent organization of: MIPgen is parent organization of: i2b2 Cross-Institutional Clinical Translational Research project is parent organization of: ACTTION is parent organization of: GeneReviews is parent organization of: Aging Dementia and Traumatic Brain Injury Study is parent organization of: iModel is parent organization of: University of Washington Diabetes Research Center Quantitative and Functional Proteomics Core Facility is parent organization of: University of Washington Diabetes Research Center Vector and Transgenic Mouse Core is parent organization of: University of Washington Diabetes Research Center Cell Function Analysis Core Facility is parent organization of: University of Washington Diabetes Research Center Human Studies Core Facility is parent organization of: University of Washington Diabetes Research Center is parent organization of: University of Washington Diabetes Research Center Cellular and Molecular Imaging Core is parent organization of: University of Washington Diabetes Research Center Administrative Core is parent organization of: University of Washington Nutrition and Obesity Research Center Adipose Tissue and Obesity Core is parent organization of: University of Washington Nutrition and Obesity Research Center is parent organization of: University of Washington Nutrition and Obesity Research Center Administrative and Enrichment Core is parent organization of: University of Washington Nutrition and Obesity Research Center Analytic Core is parent organization of: University of Washington Nutrition and Obesity Research Center Energy Balance Core is parent organization of: Cystic Fibrosis Center - University of Washington Administrative and Enrichment Core is parent organization of: Cystic Fibrosis Center - University of Washington Host Response Core is parent organization of: University of Washington Genomics Core Cystic Fibrosis Research Translation Center and Research Development Program is parent organization of: Cystic Fibrosis Center - University of Washington Microbiology Core is parent organization of: Cystic Fibrosis Center - University of Washington Clinical Core is parent organization of: Cystic Fibrosis Center - University of Washington is parent organization of: Science Dynamics is parent organization of: Shannon is parent organization of: Skyline is parent organization of: PanoramaWeb is parent organization of: SBFSEM-tools is parent organization of: TopHat is parent organization of: Combined Annotation Dependent Depletion is parent organization of: SuperSegger is parent organization of: Monocle3 is parent organization of: Robetta is parent organization of: Mozak is parent organization of: Protein Cross-Linking Database is parent organization of: Kojak is parent organization of: Simple Behavior Analysis project is parent organization of: ACRoBaT is parent organization of: University of Washington I-LABS MEG Brain Imaging Center Core Facility is parent organization of: University of Washington Transgenic Resources Program Core Facility is parent organization of: University of Washington Mouse CRISPR Core Facility is parent organization of: University of Washington Translational BioImaging Core Facility is parent organization of: University of Washington Northwest Metabolomics Research Center Core Facility is parent organization of: University of Washington Histology and Imaging Core Facility is parent organization of: University of Washington Gnotobiotic Animal Core Facility is parent organization of: University of Washington In Vivo Services (IVS) Core Facility is parent organization of: University of Washington Histology and Imaging Core Facility |
Wikidata:Q219563, nlx_67476, ISNI:122986657, Crossref funder ID:100007812, grid.34477.33 | https://ror.org/00cvxb145 | SCR_011749 | The University of Washington, University of Washington | 2026-08-15 11:24:37 | 15 | |||||||
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Bridging Interventional Development Gaps Resource Report Resource Website |
Bridging Interventional Development Gaps (RRID:SCR_005635) | BrIDGs, RAID, NIH RAID | material analysis service, service resource, analysis service resource, production service resource | on a competitive basis, successful applicants receive access to NIH contractors who conduct preclinical studies at no cost to the investigator for the development of new therapeutic agents. In general, synthesis, formulation, pharmacokinetic and toxicology services in support of investigator-held Investigational New Drug (IND) applications to the Food and Drug Administration are available. Contract costs are supported by the NIH Common Fund and collaborating NIH Institutes and Centers. Access to contracts is based upon a peer-reviewed application process. The number of awards made will depend on the number of applications received, their scientific merit, and the availability of NIH funds. BrIDGs is not a complete drug development program or an unconditional commitment to develop a particular compound for the clinic. In some cases the program supports one or two key steps for preclinical development, while in other cases it assists with most of the development tasks needed to file an IND. The services provided by the program depend upon the stage of a given project and need for additional data. Once a project is approved, NIH staff work with principal investigators to develop a plan for the conduct of proposed studies. Contractors perform tasks approved by BrIDGs under the direction of NIH staff. Development proceeds sequentially in most cases and the start of one segment of the project (e.g., toxicology) may depend on satisfactory completion of preceding segments (e.g., formulation). Insurmountable difficulties in one segment may force the discontinuation of an entire project. BrIDGs supports projects proposed by academic institutions, not-for-profit organizations, and SBIR-eligible businesses. Foreign academic and non-profit institutions may also apply. Potential therapies for any disease or disorder may be submitted to BrIDGs. All proposed therapeutic agents should have demonstrated pharmacological activity in an appropriate in vivo disease model before applying. |
is related to: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases has parent organization: National Center for Advancing Translational Sciences |
NIH Common Fund | nlx_146247 | SCR_005635 | NIH Rapid Access to Intervention Development, Rapid Access to Intervention Development | 2026-08-15 11:28:41 | 0 | ||||||||
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Mouse Genome Informatics (MGI) Resource Report Resource Website 1000+ mentions |
Mouse Genome Informatics (MGI) (RRID:SCR_006460) | MGI | data or information resource, database | International database for laboratory mouse. Data offered by The Jackson Laboratory includes information on integrated genetic, genomic, and biological data. MGI creates and maintains integrated representation of mouse genetic, genomic, expression, and phenotype data and develops reference data set and consensus data views, synthesizes comparative genomic data between mouse and other mammals, maintains set of links and collaborations with other bioinformatics resources, develops and supports analysis and data submission tools, and provides technical support for database users. Projects contributing to this resource are: Mouse Genome Database (MGD) Project, Gene Expression Database (GXD) Project, Mouse Tumor Biology (MTB) Database Project, Gene Ontology (GO) Project at MGI, and MouseCyc Project at MGI. | RIN, Resource Information Network, molecular neuroanatomy resource, human health, human disease, animal model, gene expression, phenotype, genotype, gene, pathway, orthology, tumor, strain, single nucleotide polymorphism, recombinase, function, blast, image, pathology, model, data analysis service, genome, genetics, gold standard, RRID Community Authority |
uses: InterMOD is used by: NIF Data Federation is used by: Resource Identification Portal is used by: PhenoGO is used by: Integrated Animals is used by: Cytokine Registry is used by: NIH Heal Project is recommended by: Resource Identification Portal is recommended by: NIDDK Information Network (dkNET) is recommended by: National Library of Medicine is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: 3DVC is listed by: re3data.org is listed by: OMICtools is listed by: NIH Data Sharing Repositories is listed by: InterMOD is listed by: Resource Information Network is affiliated with: InterMOD is related to: MONARCH Initiative is related to: MouseCyc is related to: AmiGO is related to: Gene Expression Database is related to: Bgee: dataBase for Gene Expression Evolution is related to: HomoloGene is related to: Rat Gene Symbol Tracker is related to: Enhancer Trap Line Browser is related to: Integrated Brain Gene Expression is related to: MalaCards is related to: Gene Ontology is related to: BioMart Project is related to: NIH Data Sharing Repositories is related to: RIKEN integrated database of mammals is related to: JAX Neuroscience Mutagenesis Facility is related to: PhenoGO is related to: International Mouse Strain Resource is related to: Mouse Genome Database is related to: Mouse Tumor Biology Database has parent organization: Jackson Laboratory is parent organization of: Anatomy of the Laboratory Mouse is parent organization of: Mouse Genome Informatics Transgenes is parent organization of: Federation of International Mouse Resources is parent organization of: MGI GO Browser is parent organization of: Recombinase (cre) Activity is parent organization of: Mouse Genome Informatics: The Mouse Gene Expression Information Resource Project is parent organization of: Deltagen and Lexicon Knockout Mice and Phenotypic Data Resource is parent organization of: MGI strains is parent organization of: MPO is parent organization of: Phenotypes and Mutant Alleles is parent organization of: Human Mouse Disease Connection is parent organization of: Functional Annotation is parent organization of: Strains, SNPs and Polymorphisms is parent organization of: Vertebrate Homology is parent organization of: Batch Data and Analysis Tool is parent organization of: Nomenclature |
NHGRI HG000330; NHGRI HG002273; NICHD HD033745; NCI CA089713 |
PMID:19274630 PMID:18428715 |
Free, Freely available | nif-0000-00096, OMICS_01656, r3d100010266 | http://www.informatics.jax.org/batch, http://www.informatics.jax.org/submit.shtml, http://www.informatics.jax.org/expression.shtml, https://doi.org/10.17616/R35P54 | SCR_006460 | , MGI, Mouse Genome Informatics | 2026-08-15 11:28:50 | 1220 | ||||
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Worldwide Protein Data Bank (wwPDB) Resource Report Resource Website 1000+ mentions |
Worldwide Protein Data Bank (wwPDB) (RRID:SCR_006555) | wwPDB | data or information resource, database | Public global Protein Data Bank archive of macromolecular structural data overseen by organizations that act as deposition, data processing and distribution centers for PDB data. Members are: RCSB PDB (USA), PDBe (Europe) and PDBj (Japan), and BMRB (USA). This site provides information about services provided by individual member organizations and about projects undertaken by wwPDB. Data available via websites of its member organizations. | 3-dimentional, bioinformatics, protein, research, structure, macromolecule, structural data, 3d spatial image, gold standard |
is used by: Ligand Expo is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is related to: Biological Magnetic Resonance Data Bank (BMRB) is related to: Proteopedia - Life in 3D is related to: NRG-CING is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is related to: DNA DataBank of Japan (DDBJ) is related to: PDBe - Protein Data Bank in Europe is related to: PDBe - Protein Data Bank in Europe is related to: PDBj - Protein Data Bank Japan is related to: Biological Magnetic Resonance Data Bank (BMRB) is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is related to: PDB Validation Server is related to: Structural Antibody Database is parent organization of: PDB-Dev works with: PDB-REDO |
NSF ; NIGMS ; DOE ; NLM ; NCI ; NINDS ; NIDDK ; European Molecular Biology Laboratory ; Heidelberg; Germany ; Wellcome Trust ; BBSRC ; NIH ; European Union ; NBDC - National Bioscience Database Center ; Japan Science and Technology Agency |
PMID:14634627 | Free, Freely available | nif-0000-23903, r3d100011104 | https://doi.org/10.17616/R3462V | SCR_006555 | World Wide Protein DataBank, wwPDB, Worldwide Protein Data Bank (wwPDB), World Wide Protein Data Bank, Worldwide Protein DataBank | 2026-08-15 11:28:46 | 1340 | ||||
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UniProt Resource Report Resource Website 10000+ mentions |
UniProt (RRID:SCR_002380) | UniProt | data or information resource, database | Collection of data of protein sequence and functional information. Resource for protein sequence and annotation data. Consortium for preservation of the UniProt databases: UniProt Knowledgebase (UniProtKB), UniProt Reference Clusters (UniRef), and UniProt Archive (UniParc), UniProt Proteomes. Collaboration between European Bioinformatics Institute (EMBL-EBI), SIB Swiss Institute of Bioinformatics and Protein Information Resource. Swiss-Prot is a curated subset of UniProtKB. | collection, protein, sequence, annotation, data, functional, information |
is used by: LIPID MAPS Proteome Database is used by: ChannelPedia is used by: Open PHACTS is used by: DisGeNET is used by: Smart Dictionary Lookup is used by: MitoMiner is used by: Cytokine Registry is used by: MobiDB is used by: Pathway Analysis Tool for Integration and Knowledge Acquisition is used by: Phospho.ELM is used by: GEROprotectors is used by: SwissLipids is recommended by: NIDDK Information Network (dkNET) is recommended by: National Library of Medicine is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: re3data.org is listed by: LabWorm is related to: Clustal W2 is related to: UniProt DAS is related to: UniParc at the EBI is related to: ProDom is related to: LegumeIP is related to: Pathway Commons is related to: NIH Data Sharing Repositories is related to: FlyMine is related to: IMEx - The International Molecular Exchange Consortium is related to: 3D-Interologs is related to: Biomine is related to: EBIMed is related to: STOP is related to: Coremine Medical is related to: BioExtract is related to: STRAP is related to: GOTaxExplorer is related to: GoAnnotator is related to: IT-GOM: Integrated Tool for IC-based GO Semantic Similarity Measures is related to: Whatizit is related to: MOPED - Model Organism Protein Expression Database is related to: Polbase is related to: PredictSNP is related to: PSICQUIC Registry is related to: IntAct is related to: p300db is related to: UniProt Proteomes is related to: SARS-CoV-2 mutation effects and 3D structure prediction from sequence covariation has parent organization: European Bioinformatics Institute has parent organization: SIB Swiss Institute of Bioinformatics has parent organization: Protein Information Resource is parent organization of: UniProtKB is parent organization of: NEWT is parent organization of: UniParc is parent organization of: UniProt Chordata protein annotation program is parent organization of: UniRef works with: Genotate works with: CellPhoneDB works with: MOLEonline works with: MiMeDB |
NHGRI U41 HG006104; NHGRI P41 HG02273; NIGMS 5R01GM080646; NIGMS R01 GM080646; NLM G08 LM010720; NCRR P20 RR016472; NSF DBI-0850319; British Heart Foundation ; NEI ; NHLBI ; NIA ; NIAID ; NIDDK ; NIMH ; NCI ; EMBL ; PDUK ; ARUK ; NHGRI U24 HG007722 |
PMID:19843607 PMID:18836194 PMID:18045787 PMID:17142230 PMID:16381842 PMID:15608167 PMID:14681372 |
nif-0000-00377, SCR_018750, r3d100010357 | http://www.ebi.uniprot.org, http://www.uniprot.org/uniprot/, http://www.pir.uniprot.org, ftp://ftp.uniprot.org, https://doi.org/10.17616/R3BW2M | SCR_002380 | , The Universal Protein Resource, Universal Protein Resource, UNIPROT Universal Protein Resource | 2026-08-15 11:28:29 | 19823 | |||||
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St. Marianna University School of Medicine; Kawasaki; Japan Resource Report Resource Website |
St. Marianna University School of Medicine; Kawasaki; Japan (RRID:SCR_011537) | institution, university | is related to: Kidney Health Initiative | SCR_011537 | St. Marianna University School of Medicine | 2026-08-15 11:31:15 | 0 |
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