COBrA
Resource Report
Resource Website
1000+ mentions
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COBrA (RRID:SCR_005677)
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COBrA
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software resource
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COBrA is a Java-based ontology editor for bio-ontologies that distinguishes itself from other editors by supporting the linking of concepts between two ontologies, and providing sophisticated analysis and verification functions. In addition to the Gene Ontology and Open Biology Ontologies formats, COBrA can import and export ontologies in the Semantic Web formats RDF, RDFS and OWL. Platform: Windows compatible, Mac OS X compatible, Linux compatible, Unix compatible, THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
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ontology, anatomy, browser, ontology or annotation browser
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is listed by: Gene Ontology Tools
is related to: Gene Ontology
is related to: OBO
has parent organization: University of Edinburgh; Scotland; United Kingdom
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BBSRC 15/BEP 17046 |
PMID:15513995 |
THIS RESOURCE IS NO LONGER IN SERVICE |
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nlx_149117 |
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SCR_005677 |
COBrA - An Ontology Browser for Anatomy, COBrA: a bio-ontology editor |
2026-09-05 06:25:39 |
1396 |
OBO
Resource Report
Resource Website
100+ mentions
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OBO (RRID:SCR_007083)
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OBO
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controlled vocabulary, data or information resource, knowledge environment, narrative resource, ontology, standard specification
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A collaboration involving developers of science-based ontologies who are establishing a set of principles for ontology development with the goal of creating a suite of orthogonal interoperable reference ontologies in the biomedical domain. In addition to a listing of OBO ontologies, this site provides a statement of the OBO Foundry principles, discussion fora, technical infrastructure, and other services to facilitate ontology development. Feedback is welcome and participation encouraged.
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biomedical, metadata standard, gold standard, FASEB list
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lists: CHEBI
lists: NCI Thesaurus
lists: Porifera Ontology
lists: Gazetteer
lists: Human Disease Ontology
lists: Information Artifact Ontology
lists: Teleost Anatomy Ontology
lists: Gene Ontology
lists: Spider Ontology
lists: Mental Functioning Ontology
lists: Ascomycete Phenotype Ontology
lists: Beta Cell Genomics Ontology
lists: Biological Collections Ontology
lists: Emotion Ontology
lists: Chemical Methods Ontology
lists: Chemical Information Ontology
lists: Clinical Measurement Ontology
lists: Common Anatomy Reference Ontology
lists: Experimental Conditions Ontology
lists: Dictyostelium Discoideum Anatomy Ontology
lists: Fission Yeast Phenotype Ontology
lists: Fly Taxonomy
lists: FlyBase Controlled Vocabulary
lists: Hymenoptera Anatomy Ontology
lists: Influenza Ontology
lists: Lipid Ontology
lists: Kinetic Simulation Algorithm Ontology
lists: Malaria Ontology
lists: Measurement Method Ontology
lists: Minimal Anatomical Terminology
lists: Ontology for Genetic Interval
lists: Ontology for Parasite LifeCycle
lists: Ontology of Adverse Events
lists: Ontology of Medically Related Social Entities
lists: Ontology of Vaccine Adverse Events
lists: Rat Strain Ontology
lists: Plant Environmental Conditions
lists: Plant Trait Ontology
lists: Population and Community Ontology
lists: RNA Ontology
lists: Rat Strain Ontology
lists: Subcellular Anatomy Ontology
lists: Software Ontology
lists: Suggested Ontology for Pharmacogenomics
lists: Vertebrate Taxonomy Ontology
lists: Physico-Chemical Process
lists: Adverse Event Reporting Ontology
lists: Xenopus Anatomy Ontology
lists: Cell Line Ontology
lists: Human Phenotype Ontology
lists: Neurobehavior Ontology
lists: Ontology for Biomedical Investigations
lists: Comparative Data Analysis Ontology
lists: Ontology for General Medical Science
lists: Physico-Chemical Methods and Properties
lists: Gene Regulation Ontology
is listed by: FORCE11
is related to: MeGO
is related to: Drosophila anatomy and development ontologies
is related to: Cell Type Ontology
is related to: OBO-Edit
is related to: go-perl
is related to: OWLTools
is related to: Zebrafish Anatomical Ontology
is related to: OBO Tracker: Plant Ontology (PO) TERM requests
is related to: eVOC
is related to: OnEx - Ontology Evolution Explorer
is related to: BioPerl
is related to: dkCOIN
is related to: Standards-based Infrastructure with Distributed Resources
is related to: OntoVisT
is related to: COBrA
is related to: Wandora
is related to: ONTO-PERL
is related to: Genomic Standards Consortium
is related to: Ontology Lookup Service
is related to: LexGrid
is related to: SBO
is related to: RIKEN integrated database of mammals
is related to: DOAF
is related to: Gene Ontology
is related to: African Population Ontology
has parent organization: Berkeley Bioinformatics Open-Source Projects
is parent organization of: OBO Relation Ontology
is parent organization of: SO
is parent organization of: PATO
is parent organization of: MPO
is parent organization of: AEO
is parent organization of: UBERON
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PMID:17989687 |
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nlx_22892 |
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SCR_007083 |
The Open Biomedical Ontologies, OBO Foundry, Open Biological and Biomedical Ontologies, Open Biological and Biomedical Ontology Foundry |
2026-09-05 06:26:06 |
182 |
Gene Ontology Tools
Resource Report
Resource Website
10+ mentions
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Gene Ontology Tools (RRID:SCR_006941)
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GO Tools
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catalog, data or information resource, database, software repository, software resource
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Collection of tools developed by GO Consortium and by third parties. Tools are listed by category or alphabetically and continue to be improved and expanded.
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registry, annotation browser, annotation search engine, annotation visualization, ontology, annotation editor, database, data warehouse, software library, statistical analysis, slimmer-type tool, term enrichment, text mining, protein interaction, functional similarity, semantic similarity, analysis, annotation, visualization, editor
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lists: GOALIE
lists: GenNav
lists: High-Throughput GoMiner
lists: Onto-Design
lists: Avadis
lists: GONUTS
lists: PiNGO
lists: TM4 Microarray Software Suite - TIGR MultiExperiment Viewer
lists: FunSimMat
lists: BioPerl
lists: Database for Annotation Visualization and Integrated Discovery
lists: GOToolBox Functional Investigation of Gene Datasets
lists: StRAnGER
lists: Short Time-series Expression Miner (STEM)
lists: GORetriever
lists: Gene Ontology Browsing Utility (GOBU)
lists: GeneTools
lists: GOSlimViewer
lists: go-moose
lists: Network Ontology Analysis
lists: OBO-Edit
lists: Onto-Compare
lists: Onto-Express
lists: OntoVisT
lists: STRAP
lists: CGAP GO Browser
lists: COBrA
lists: Gene Class Expression
lists: GeneInfoViz
lists: GOfetcher
lists: GoFish
lists: GOProfiler
lists: GOanna
lists: Manatee
lists: Pandora - Protein ANnotation Diagram ORiented Analysis
lists: TAIR Keyword Browser
lists: Wandora
lists: GeneMANIA
lists: GOTaxExplorer
lists: go-db-perl
lists: Onto-Miner
lists: Onto-Translate
lists: ToppGene Suite
lists: DBD - Slim Gene Ontology
lists: go-perl
lists: ONTO-PERL
lists: OWLTools
lists: Blip: Biomedical Logic Programming
lists: OWL API
lists: CLENCH
lists: BiNGO: A Biological Networks Gene Ontology tool
lists: CateGOrizer
lists: FuSSiMeG: Functional Semantic Similarity Measure between Gene-Products
lists: ProteInOn
lists: GeneMerge
lists: GraphWeb
lists: ClueGO
lists: CLASSIFI - Cluster Assignment for Biological Inference
lists: GOHyperGAll
lists: FuncAssociate: The Gene Set Functionator
lists: GOdist
lists: FuncExpression
lists: FunCluster
lists: FIVA - Functional Information Viewer and Analyzer
lists: GARBAN
lists: GOEx - Gene Ontology Explorer
lists: SGD Gene Ontology Slim Mapper
lists: GOArray
lists: GoSurfer
lists: GOtcha
lists: MAPPFinder
lists: GoAnnotator
lists: MetaGeneProfiler
lists: OntoGate
lists: ProfCom - Profiling of complex functionality
lists: SerbGO
lists: SOURCE
lists: Ontologizer
lists: THEA - Tools for High-throughput Experiments Analysis
lists: Generic GO Term Mapper
lists: GREAT: Genomic Regions Enrichment of Annotations Tool
lists: GoBean - a Java application for Gene Ontology enrichment analysis
lists: TXTGate
lists: GO-Module
lists: IT-GOM: Integrated Tool for IC-based GO Semantic Similarity Measures
lists: G-SESAME - Gene Semantic Similarity Analysis and Measurement Tools
lists: Expression Profiler
lists: GOChase
lists: Whatizit
lists: REViGO
lists: WEGO - Web Gene Ontology Annotation Plot
lists: Blast2GO
lists: InterProScan
lists: PubSearch
lists: GO Online SQL Environment (GOOSE)
lists: Gene Ontology For Functional Analysis (GOFFA)
lists: MGI GO Browser
lists: GOEAST - Gene Ontology Enrichment Analysis Software Toolkit
lists: Ontology Lookup Service
lists: WebGestalt: WEB-based GEne SeT AnaLysis Toolkit
lists: g:Profiler
lists: OwlSim
lists: GOrilla: Gene Ontology Enrichment Analysis and Visualization Tool
lists: FastSemSim
lists: RamiGO
lists: GeneCodis
lists: FunSpec
lists: FunNet - Transcriptional Networks Analysis
lists: agriGO
lists: GOblet
lists: DynGO
lists: SeqExpress
lists: ProbeExplorer
lists: GOstat
lists: Onto-Express To Go (OE2GO)
lists: Tk-GO
lists: Spotfire
lists: GOMO - Gene Ontology for Motifs
lists: GFINDer: Genome Function INtegrated Discoverer
lists: Agile Protein Interactomes DataServer
lists: elk-reasoner
lists: Flash Gviewer
lists: L2L Microarray Analysis Tool
lists: OnEx - Ontology Evolution Explorer
lists: Semantic Measures Library
lists: AmiGO
lists: Babelomics
lists: T-profiler
lists: QuickGO
lists: FSST - Functional Similarity Search Tool
lists: GoPubMed
lists: Bioconductor
lists: ErmineJ
lists: Comparative Toxicogenomics Database (CTD)
lists: LexGrid
lists: Candidate Genes to Inherited Diseases
lists: EGAN: Exploratory Gene Association Networks
lists: Generic GO Term Finder
lists: Integrated Manually Extracted Annotation
lists: EASE: the Expression Analysis Systematic Explorer
is listed by: NIF Data Federation
has parent organization: Gene Ontology
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Free, Freely available |
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nlx_146273 |
https://neuinfo.org/mynif/search.php?q=*&t=indexable&nif=nlx_146273-1 |
http://www.geneontology.org/GO.tools.shtml |
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SCR_006941 |
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2026-09-05 06:26:04 |
27 |
Gene Ontology
Resource Report
Resource Website
10000+ mentions
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Gene Ontology (RRID:SCR_002811)
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GO
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consortium, data or information resource, knowledge environment resource, organization portal, portal, project portal
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Computable knowledge regarding functions of genes and gene products. GO resources include biomedical ontologies that cover molecular domains of all life forms as well as extensive compilations of gene product annotations to these ontologies that provide largely species-neutral, comprehensive statements about what gene products do. Used to standardize representation of gene and gene product attributes across species and databases.
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gene, product, annotation, molecular, function, cellular, biological, role, database, query, obo, gold standard, bio.tools, FASEB list
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is used by: NIF Data Federation
is used by: GreenPhylDB
is used by: LIPID MAPS Proteome Database
is used by: Aging Portal
is used by: ChannelPedia
is used by: Open PHACTS
is used by: CoPub
is used by: PhenoGO
is used by: Database for Annotation Visualization and Integrated Discovery
is used by: MitoMiner
is used by: dcGO
is used by: Pathway Analysis Tool for Integration and Knowledge Acquisition
is used by: barleyGO
is used by: SynGO
is used by: Functional Annotation
is used by: SwissLipids
is listed by: BioPortal
is listed by: OBO
is listed by: OMICtools
is listed by: bio.tools
is listed by: Debian
is affiliated with: Mouse Genome Informatics: The Gene Ontology Project
is related to: GenNav
is related to: SynaptomeDB
is related to: High-Throughput GoMiner
is related to: Onto-Design
is related to: OnEx - Ontology Evolution Explorer
is related to: Avadis
is related to: GONUTS
is related to: PiNGO
is related to: Automated Microarray Pipeline
is related to: categoryCompare
is related to: globaltest
is related to: Semantic Measures Library
is related to: WegoLoc
is related to: AnimalTFDB
is related to: MEME Suite - Motif-based sequence analysis tools
is related to: Arabidopsis Hormone Database
is related to: DAVID
is related to: Arabidopsis thaliana Protein Interactome Database
is related to: TM4 Microarray Software Suite - TIGR MultiExperiment Viewer
is related to: pSTIING
is related to: GoMiner
is related to: FunSimMat
is related to: GeneSpeed- A Database of Unigene Domain Organization
is related to: Centre for Modeling Human Disease Gene Trap Resource
is related to: Patterns of Gene Expression in Drosophila Embryogenesis
is related to: Babelomics
is related to: BioPerl
is related to: GeneCruiser
is related to: GOLEM An interactive, graphical gene-ontology visualization, navigation, and analysis tool
is related to: GOToolBox Functional Investigation of Gene Datasets
is related to: Cotton EST Database
is related to: MouseNET
is related to: PLANTTFDB
is related to: T-profiler
is related to: Physico-Chemical Process
is related to: Integrated Molecular Interaction Database
is related to: SEGS
is related to: GOCat
is related to: Quantitative Enrichment of Sequence Tags
is related to: Neural-Immune Gene Ontology
is related to: INMEX
is related to: StRAnGER
is related to: QuickGO
is related to: Repository of molecular brain neoplasia data
is related to: Cardiovascular Gene Ontology Annotation Initiative
is related to: PANTHER
is related to: Short Time-series Expression Miner (STEM)
is related to: DATFAP
is related to: GORetriever
is related to: Gene Ontology Browsing Utility (GOBU)
is related to: GeneTools
is related to: GOSlimViewer
is related to: go-moose
is related to: Network Ontology Analysis
is related to: Onto-Compare
is related to: Onto-Express
is related to: OntoVisT
is related to: STRAP
is related to: CGAP GO Browser
is related to: COBrA
is related to: Gene Class Expression
is related to: GeneInfoViz
is related to: GOfetcher
is related to: GoFish
is related to: GOProfiler
is related to: GOanna
is related to: Manatee
is related to: Pandora - Protein ANnotation Diagram ORiented Analysis
is related to: TAIR Keyword Browser
is related to: Wandora
is related to: GOTaxExplorer
is related to: Onto-Miner
is related to: Onto-Translate
is related to: ToppGene Suite
is related to: DBD - Slim Gene Ontology
is related to: ONTO-PERL
is related to: Blip: Biomedical Logic Programming
is related to: OWL API
is related to: CLENCH
is related to: BiNGO: A Biological Networks Gene Ontology tool
is related to: CateGOrizer
is related to: FuSSiMeG: Functional Semantic Similarity Measure between Gene-Products
is related to: ProteInOn
is related to: GeneMerge
is related to: GraphWeb
is related to: ClueGO
is related to: CLASSIFI - Cluster Assignment for Biological Inference
is related to: GOHyperGAll
is related to: FuncAssociate: The Gene Set Functionator
is related to: GOdist
is related to: FuncExpression
is related to: FunCluster
is related to: FIVA - Functional Information Viewer and Analyzer
is related to: GARBAN
is related to: GOEx - Gene Ontology Explorer
is related to: SGD Gene Ontology Slim Mapper
is related to: GOArray
is related to: SNPsandGO
is related to: GoSurfer
is related to: GOtcha
is related to: MAPPFinder
is related to: GoAnnotator
is related to: MetaGeneProfiler
is related to: OntoGate
is related to: ProfCom - Profiling of complex functionality
is related to: SerbGO
is related to: SOURCE
is related to: Ontologizer
is related to: THEA - Tools for High-throughput Experiments Analysis
is related to: Generic GO Term Mapper
is related to: GREAT: Genomic Regions Enrichment of Annotations Tool
is related to: GoBean - a Java application for Gene Ontology enrichment analysis
is related to: TXTGate
is related to: GO-Module
is related to: IT-GOM: Integrated Tool for IC-based GO Semantic Similarity Measures
is related to: G-SESAME - Gene Semantic Similarity Analysis and Measurement Tools
is related to: MalaCards
is related to: FSST - Functional Similarity Search Tool
is related to: Expression Profiler
is related to: GOChase
is related to: GoPubMed
is related to: Whatizit
is related to: REViGO
is related to: WEGO - Web Gene Ontology Annotation Plot
is related to: Blast2GO
is related to: InterProScan
is related to: PubSearch
is related to: TrED
is related to: CharProtDB: Characterized Protein Database
is related to: VirHostNet: Virus-Host Network
is related to: Pathbase
is related to: GO Online SQL Environment (GOOSE)
is related to: Neurobehavior Ontology
is related to: InterSpecies Analysing Application using Containers
is related to: KOBAS
is related to: ConceptWiki
is related to: GeneTerm Linker
is related to: Bioconductor
is related to: ErmineJ
is related to: Gene Ontology For Functional Analysis (GOFFA)
is related to: MGI GO Browser
is related to: Comparative Toxicogenomics Database (CTD)
is related to: GOEAST - Gene Ontology Enrichment Analysis Software Toolkit
is related to: Ontology Lookup Service
is related to: LexGrid
is related to: WebGestalt: WEB-based GEne SeT AnaLysis Toolkit
is related to: g:Profiler
is related to: OwlSim
is related to: GOrilla: Gene Ontology Enrichment Analysis and Visualization Tool
is related to: YeTFaSCo
is related to: FastSemSim
is related to: RamiGO
is related to: AutismKB
is related to: GeneCodis
is related to: FunSpec
is related to: FunNet - Transcriptional Networks Analysis
is related to: PhenoM - Phenomics of yeast Mutants
is related to: agriGO
is related to: GOblet
is related to: DynGO
is related to: SeqExpress
is related to: ProbeExplorer
is related to: ECgene: Gene Modeling with Alternative Splicing
is related to: Organelle DB
is related to: Gemma
is related to: Candidate Genes to Inherited Diseases
is related to: Proteome Analyst PA-GOSUB
is related to: Network Analysis, Visualization and Graphing TORonto
is related to: GOstat
is related to: Onto-Express To Go (OE2GO)
is related to: Tk-GO
is related to: EGAN: Exploratory Gene Association Networks
is related to: Spotfire
is related to: GOMO - Gene Ontology for Motifs
is related to: GFINDer: Genome Function INtegrated Discoverer
is related to: Generic GO Term Finder
is related to: Agile Protein Interactomes DataServer
is related to: AgingDB
is related to: UBERON
is related to: Algal Functional Annotation Tool
is related to: gsGator
is related to: Flash Gviewer
is related to: Cerebellar Development Transcriptome Database
is related to: PlantNATsDB - Plant Natural Antisense Transcripts DataBase
is related to: EASE: the Expression Analysis Systematic Explorer
is related to: PiGenome
is related to: L2L Microarray Analysis Tool
is related to: MeGO
is related to: CELDA Ontology
is related to: Diabetes Disease Portal
is related to: MatrixDB
is related to: Kidney and Urinary Pathway Knowledge Base
is related to: MouseCyc
is related to: Candida Genome Database
is related to: Honey Bee Brain EST Project
is related to: ECO
is related to: FlyMine
is related to: Gramene
is related to: 3D-Interologs
is related to: Biomine
is related to: UniProtKB
is related to: NCBI BioSystems Database
is related to: EBIMed
is related to: Coremine Medical
is related to: EMAGE Gene Expression Database
is related to: GeneMANIA
is related to: Yeast Search for Transcriptional Regulators And Consensus Tracking
is related to: GeneTrail
is related to: Magic
is related to: Mouse Genome Informatics (MGI)
is related to: FlyBase
is related to: InterPro
is related to: InnateDB
is related to: canSAR
is related to: HPRD - Human Protein Reference Database
is related to: CRCView
is related to: Integrated Manually Extracted Annotation
is related to: LegumeIP
is related to: Renal Disease Portal
is related to: PhenoGO
is related to: DOAF
is related to: OBO
is related to: biomaRt
is related to: OncoboxPD
is parent organization of: AmiGO
is parent organization of: GOlr
is parent organization of: RefGenome
is parent organization of: OBO-Edit
is parent organization of: OWLTools
is parent organization of: Gene Ontology Tools
is parent organization of: Gene Ontology Extension
is parent organization of: SO
is parent organization of: go-db-perl
is parent organization of: go-perl
works with: topGO
works with: DIANA-mirPath
works with: GOnet
is organization facet of: Alliance of Genome Resources
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European Union QLRI-CT-2001-00015;
European Union QLRI-CT-2001-0098;
NHGRI P41 HG002273 |
PMID:23161678
PMID:10802651 |
Free, Freely available, Available for download |
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biotools:go, OMICS_02278, nif-0000-02915 |
http://bioportal.bioontology.org/ontologies/GO, https://bio.tools/go |
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SCR_002811 |
the Gene Ontology, GO, Gene Ontology Resource, Gene Ontology |
2026-09-05 06:24:54 |
12993 |
University of Edinburgh; Scotland; United Kingdom
Resource Report
Resource Website
10+ mentions
|
University of Edinburgh; Scotland; United Kingdom (RRID:SCR_011637)
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university
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Research university in Edinburgh, Scotland, founded in 1582. Has five main campuses. Known for arts, humanities and computer science.
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is related to: International AMD Genetics Consortium
is parent organization of: Schizophrenia and Bipolar Disorder Genetics Blog
is parent organization of: Neural Open Simulation
is parent organization of: eMouseAtlas
is parent organization of: flytrap
is parent organization of: nematodes.org
is parent organization of: BrainTrap: Fly Brain Protein Trap Database
is parent organization of: Roslin Wellcome Trust Tick Cell Biobank
is parent organization of: Virtual Fly Brain
is parent organization of: COBrA
is parent organization of: BioLayout Express 3D
is parent organization of: Protein-Protein Interaction Database
is parent organization of: GPX-Macrophage
is parent organization of: LumbriBASE
is parent organization of: BoLA Nomenclature: International Society for Animal Genetics
is parent organization of: CaDBase: Genetic diversity in cattle
is parent organization of: CVonline: The Evolving, Distributed, Non-Proprietary Online Compendium of Computer Vision
is parent organization of: FigTree
is parent organization of: CAMARADES Protocols for Systematic Reviews of Animal Studies
is parent organization of: BEAST
is parent organization of: Edinburgh Brain and Tissue Banks
is parent organization of: University of Edinburgh GenePool Next Generation Sequencing and Bioinformatics
is parent organization of: University of Edinburgh Labs and Facilities
is parent organization of: Roslin Institute Labs and Facilities
is parent organization of: University of Edinburgh Immunodetection and Imaging
is parent organization of: Queens Medical Research Institute Labs and Facilities
is parent organization of: GeneProf
is parent organization of: NCJDSU
is parent organization of: Kidney Development Database
is parent organization of: Genes to Cognition - Biological Resources
is parent organization of: 959 Nematode Genomes
is parent organization of: Biological General Repository for Interaction Datasets (BioGRID)
is parent organization of: Parallel Stochastic Ion Channel Simulator
is parent organization of: Seq-Gen
is parent organization of: eHistology
is parent organization of: Simple Neurite Tracer
is parent organization of: University of Edinburgh Wellcome Trust Centre for Cell Biology Bioinformatics Core Facility
is parent organization of: University of Edinburgh College of Medicine and Veterinary Medicine MRC Institute of Genetics and Molecular Medicine Bioinformatics Analysis Core Facility
is parent organization of: GeneATLAS
is parent organization of: Systematic Review Facility
is parent organization of: University of Edinburgh Clinical Research Mass Spectrometry Core Facility
is parent organization of: University of Edinburgh EdinOmics Core Facility
is parent organization of: University of Edinburgh Genomics Core Facility
is parent organization of: Automated Systematic Search Deduplicator
is parent organization of: University of Edinburgh UK Zebrafish Imaging and Screening Core Facility
is parent organization of: University of Edinburgh Institute of Genetics and Cancer IGC Mass Spectrometry Core Facility
hosts: BRAINS Imagebank
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ISNI 0000 0004 1936 7988, , Crossref Funder ID 501100000848, GRID grid.4305.2, Wikidata Q160302, nlx_37972 |
https://ror.org/01nrxwf90 |
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SCR_011637 |
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2026-09-05 06:33:48 |
10 |
