Kidney and Urinary Pathway Knowledge Base
Resource Report
Resource Website
1+ mentions
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Kidney and Urinary Pathway Knowledge Base (RRID:SCR_001746)
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KUPKB
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service resource, analysis service resource, data or information resource, storage service resource, data analysis service, production service resource, data repository, data set
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A collection of omics datasets (mRNA, proteins and miRNA) that have been extracted from PubMed and other related renal databases, all related to kidney physiology and pathology giving KUP biologists the means to ask queries across many resources in order to aggregate knowledge that is necessary for answering biological questions. Some microarray raw datasets have also been downloaded from the Gene Expression Omnibus and analyzed by the open-source software GeneArmada. The Semantic Web technologies, together with the background knowledge from the domain's ontologies, allows both rapid conversion and integration of this knowledge base. SPARQL endpoint http://sparql.kupkb.org/sparql The KUPKB Network Explorer will help you visualize the relationships among molecules stored in the KUPKB. A simple spreadsheet template is available for users to submit data to the KUPKB. It aims to capture a minimal amount of information about the experiment and the observations made.
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kidney, urinary, urine, pathway, molecule, visualizer, gene, protein, mirna, metabolite, mrna, microarray, ortholog, rdf, renal cell, anatomy, animal model, disease, sparql, proteomics, ontology, biomarker, gene expression, physiology, pathology
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is related to: NIDDK Information Network (dkNET)
is related to: Gene Expression Omnibus
is related to: Gene Ontology
is related to: KEGG
has parent organization: University of Manchester; Manchester; United Kingdom
has parent organization: National Institute of Health and Medical Research; Rennes; France
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Kidney disease |
European Union ;
FP7 ;
ICT-2007.4.4 e-LICO project |
PMID:21624162 |
THIS RESOURCE IS NO LONGER IN SERVICE. |
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nlx_154134 |
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http://www.e-lico.eu/kupkb |
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SCR_001746 |
Kidney & Urinary Pathway Knowledge Base |
2026-08-11 09:40:26 |
2 |
Renal Disease Portal
Resource Report
Resource Website
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Renal Disease Portal (RRID:SCR_009030)
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Renal Disease Portal
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portal, topical portal, data or information resource, disease-related portal, data set
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An integrated resource for information on genes, QTLs and strains associated with a variety of kidney and renal system conditions such as Renal Hypertension, Polycystic Kidney Disease and Renal Insufficiency, as well as Kidney Neoplasms.
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gene, quantitative trait locus, strain, renal hypertension, kidney neoplasm, phenotype, pathway, biological process, disease, kidney, genome, gviewer, chromosome, molecular function, cellular component, visualization, synteny
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is related to: NIDDK Information Network (dkNET)
is related to: Gene Ontology
has parent organization: Rat Genome Database (RGD)
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Renal disease, Renal hypertension, Polycystic kidney disease, Renal insufficiency, Kidney neoplasm, Diabetes Insipidus, Hyperoxaluria, Renal hypertension, Nephritis, Nephrocalcinosis, Nephrolithiasis, Nephrosis, Renal Fibrosis, Inborn Error of Renal Tubular Transport, Uremia |
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nlx_153941 |
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SCR_009030 |
RGD Renal Disease Portal |
2026-08-11 09:41:50 |
0 |
ILSI HESI Drug-induced Nephrotoxicity Biomarkers
Resource Report
Resource Website
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ILSI HESI Drug-induced Nephrotoxicity Biomarkers (RRID:SCR_003716)
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HESI Nephrotoxicity Biomarkers
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data or information resource, standard specification, narrative resource
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Urinary kidney biomarkers, Clusterin and Renal Papillary Antigen-1 (RPA-1), that sponsors may use to determine more conservative NOAELs for estimating starting doses in the initial human clinical trial of a drug that displays nonclinical nephrotoxicity as determined by histopathology. When tested with a limited number of nephrotoxic compounds, the Receiver Operating Characteristic (ROC) analyses showed that urinary clusterin and renal papillary antigen-1 (RPA-1) have better sensitivity and specificity than BUN and creatinine for the detection of specific kidney pathologies in male rats. Clusterin and RPA-1 provide additional and complementary information to BUN, serum creatinine (sCr), and histopathology for the detection of acute drug-induced nephrotoxicity in safety assessment studies.
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biomarker, drug development, drug, urinary, urinary biomarker, gold standard, clusterin, renal papillary antigen, kidney, gold standard
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is recommended by: U.S. Food and Drug Administration
is related to: Health and Environmental Sciences Institute (HESI)
has parent organization: Drug Development Tools Qualification Programs
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Nephrotoxicity, Drug-induced nephrotoxicity |
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Public |
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nlx_157892 |
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SCR_003716 |
HESI Drug-induced Nephrotoxicity Biomarkers, ILSI / HESI Nephrotoxicity Working Group Drug-induced Nephrotoxicity Biomarkers, International Life Sciences Institute / Health and Environmental Sciences Institute Nephrotoxicity Working Group Drug-induced Nephrotoxicity Biomarkers |
2026-08-11 09:40:50 |
0 |
Public Expression Profiling Resource
Resource Report
Resource Website
10+ mentions
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Public Expression Profiling Resource (RRID:SCR_007274)
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PEPR
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data or information resource, database
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An experiment in web-database access to large multi-dimensional data sets using a standardized experimental platform to determine if the larger scientific community can be given simple, intuitive, and user-friendly web-based access to large microarray data sets. All data in PEPR is also available via NCBI GEO. The structure and goals of PEPR differ from other mRNA expression profiling databases in a number of important ways. * The experimental platform in PEPR is standardized, and is an Affymetrix - only database. All microarrays available in the PEPR web database should ascribe to quality control and standard operating procedures. A recent publication has described the QC/SOP criteria utilized in PEPR profiles ( The Tumor Analysis Best Practices Working Group 2004 ). * PEPR permits gene-based queries of large Affymetrix array data sets without any specialized software. For example, a number of large time series projects are available within PEPR, containing 40-60 microarrays, yet these can be simply queried via a dynamic web interface with no prior knowledge of microarray data analysis. * Projects in PEPR originate from scientists world-wide, but all data has been generated by the Research Center for Genetic Medicine, Children''''s National Medical Center, Washington DC. Future developments of PEPR will allow remote entry of Affymetrix data ascribing to the same QC/SOP protocols. They have previously described an initial implementation of PEPR, and a dynamic web-queried time series graphical interface ( Chen et al. 2004 ). A publication showing the utility of PEPR for pharmacodynamic data has recently been published ( Almon et al. 2003 ).
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microarray, expression profiling, affymetrix, metadata standard, gene, time series, data sharing, visualization, data mining, platform, blood, cell, cancer, bone, brain, eye, gut, heart, kidney, liver, lung, muscle, spinal cord, spleen, analysis
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is listed by: OMICtools
is related to: Gene Expression Omnibus
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NINDS ;
United States Department of Defense ;
NHGRI ;
NHLBI |
PMID:14681485
PMID:14596642 |
Public, Account required, (to download, For the analysis and visualization tools), The community can contribute to this resource |
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nif-0000-00014, OMICS_00776 |
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SCR_007274 |
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2026-08-10 09:33:13 |
16 |
PSTC Nephrotoxicity Biomarkers
Resource Report
Resource Website
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PSTC Nephrotoxicity Biomarkers (RRID:SCR_003709)
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PSTC Nephrotoxicity Biomarkers
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data or information resource, standard specification, narrative resource
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Urinary kidney biomarkers (KIM-1, albumin, total protein, 2-microglobulin, cystatin C, clusterin and trefoil factor-3) that are considered acceptable biomarkers for the detection of acute drug-induced nephrotoxicity in rats and can be included along with traditional clinical chemistry markers and histopathology in toxicology studies. These biomarkers may be used voluntarily as additional evidence of nephrotoxicity in nonclinical safety assessment studies to complement the standard data (BUN and sCr). In ROC analyses, some of these biomarkers showed better sensitivity and specificity than BUN and sCr relative to histopathological alterations considered to be the gold standard when tested with a limited number of nephrotoxicant and control compounds.
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biomarker, drug development, drug, urinary, urinary biomarker, gold standard, kim-1, albumin, total protein, beta2-microglobulin, cystatin c, clusterin, trefoil factor-3, kidney, nonclinical
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is recommended by: U.S. Food and Drug Administration
has parent organization: Drug Development Tools Qualification Programs
has parent organization: Predictive Safety Testing Consortium
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Nephrotoxicity, Drug-induced nephrotoxicity |
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Public |
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nlx_157890 |
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SCR_003709 |
Predictive Safety and Testing Consortium Drug-induced Nephrotoxicity Biomarkers, PSTC NWG Drug-induced Nephrotoxicity Biomarkers |
2026-08-11 09:40:49 |
0 |
Aged Rodent Tissue Arrays
Resource Report
Resource Website
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Aged Rodent Tissue Arrays (RRID:SCR_007332)
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NIA Tissue Arrays,
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service resource, analysis service resource, production service resource, material analysis service, biomaterial analysis service
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Offer high-throughput analysis of tissue histology and protein expression for the biogerontology research community. Each array is a 4 micron section that includes tissue cores from multiple tissues at multiple ages on one slide. The arrays are made from ethanol-fixed tissue and can be used for all techniques for which conventional tissue sections can be used. Ages are chosen to span the life from young adult to very old age. (available ages: 4, 12, 18, 24 and 28 months of age) Images of H&E stained punches are available for Liver, Cardiac Muscle, and Brain. The NIA aged rodent tissue arrays were developed with assistance from the National Cancer Institute (NCI) Tissue Array Research Program (TARP), led by Dr. Stephen Hewitt, Director. NCI TARP contains more information on tissue array construction, protocols for using arrays, and references. Preparation and Product Description Tissue arrays are prepared in parallel from different sets of animals so that experiments can be conducted in duplicate, with each array using unique animals with a unique product number. The product descriptions page describes each array, including: * Strain * Gender * Ages * Tissues * Animal Identification Numbers
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aged, biogerontology, caloric restricted, rodent, protein expression, tissue array, tissue core, histology, adult, old, old rodent, c57bl/6, male, female, liver, cardiac muscle, brain, tissue, kidney, skin, frontal cortex, muscle, thigh, white adipose tissue, pancreas, testes, prostate, spleen, lung, heart, dwarf, wild type, early adult, middle adult, late adult, microarray, image
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Aged, Old, Control, Aging |
NIA ;
NCI ;
NIH Blueprint for Neuroscience Research |
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Public: NIA aged rodent tissue arrays are available to investigators at academic and nonprofit research institutions that are engaged in projects directly related to aging and age-related disorders. |
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nif-0000-00216 |
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http://www.nia.nih.gov/ResearchInformation/ScientificResources/AgedRodentTissueBankHandbook/TissueArrays/ |
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SCR_007332 |
Aged Rodent Tissue Bank Handbook - Tissue Arrays, NIH Aged Rodent Tissue Bank Handbook Tissue Arrays |
2026-08-11 09:41:31 |
0 |
NeuroMorpho.Org
Resource Report
Resource Website
100+ mentions
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NeuroMorpho.Org (RRID:SCR_002145)
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service resource, data or information resource, storage service resource, database, data repository
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Centrally curated inventory of digitally reconstructed neurons associated with peer-reviewed publications that contains some of the most complete axonal arborizations digitally available in the community. Each neuron is represented by a unique identifier, general information (metadata), the original and standardized ASCII files of the digital morphological reconstruction, and a set of morphometric features. It contains contributions from over 100 laboratories worldwide and is continuously updated as new morphological reconstructions are collected, published, and shared. Users may browse by species, brain region, cell type or lab name. Users can also download morphological reconstructions for research and analysis. Deposition and distribution of reconstruction files ultimately prevents data loss. Centralized curation and annotation aims at minimizing the effort required by data owners while ensuring a unified format. It also provides a one-stop entry point for all available reconstructions, thus maximizing data visibility and impact.
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neuron, morphological reconstruction, morphometry, axonal arborization, digital neuronal reconstruction, neuronal reconstruction, neuronal morphology, data sharing, annotation, brain region, neocortex, digital reconstruction, neurogenetics, neurochemistry, neuroscience, neurology, FASEB list
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is used by: NIF Data Federation
is used by: BICCN
is recommended by: National Library of Medicine
is recommended by: NIDDK Information Network (dkNET)
is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
is listed by: re3data.org
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: DONE: Detection of Outlier NEurons
is related to: NIF Literature
is related to: Computational Neurobiology and Imaging Center
is related to: Integrated Manually Extracted Annotation
is related to: xyz2swc
is related to: Allen Institute for Brain Science
has parent organization: George Mason University; Virginia; USA
is parent organization of: NeuroMorpho.Org species ontology
is parent organization of: NeuroMorpho.Org species ontology old
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NINDS R01 NS39600;
MURI ONR N000141010198 |
PMID:17728438
PMID:16552417
PMID:18949582 |
Free, Available for download, Freely available |
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nif-0000-00006, r3d100010107 |
http://www.nitrc.org/projects/neuromorpho_org, http://neuromorpho.org/, https://doi.org/10.17616/R3WW2K |
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SCR_002145 |
Neuro Morpho, NeuroMorpho.org, NeuroMorpho |
2026-08-11 09:40:32 |
123 |
One Mind Biospecimen Bank Listing
Resource Report
Resource Website
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One Mind Biospecimen Bank Listing (RRID:SCR_004193)
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One Mind Biobanks, One Mind Biobank
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biomaterial supply resource, cell repository, material resource
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International registry of biomaterial supply resources both for transplantation and research. Contributions to this resource are welcome. The database is searchable through NIF and is updated regularly.
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biorepository, bio-repository, database, registry, biobank, biospecimen, repository
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is used by: NIF Data Federation
is used by: Aging Portal
lists: Midwest Transplant Network
lists: Danish Multiple Sclerosis Biobank
lists: Genetics of Kidneys in Diabetes
lists: TEDDY
lists: BioEden Tooth Cell Bank
lists: Windber Tissue Bank
lists: Boston University Alzheimer's Disease Center Neuropathology Core Facility
lists: UCL Biobank
lists: LifeLegacy Foundation
lists: CCLG Tissue Bank
lists: ADA GENNID Study
lists: Ohio State Leukemia Tissue Bank
lists: Feinstein Biorepository
lists: Iowa Donor Network
lists: National Disease Research Interchange
lists: Emory ADRC Tissue and Biospecimen Banking Facility
lists: Zebrafish Brain Atlas
lists: KI Biobank - Amphetamine dependence
lists: KI Biobank - PAIN
lists: PRACSIS - Prognosis and Risk in Acute Coronary Syndromes In Sweden
lists: Africa Centre Biobank
lists: UCSF Brain Tumor Tissue Bank
lists: Southampton Tumour Bank
lists: California National Primate Research Center Analytical and Resource Core
lists: CPCTR: Cooperative Prostate Cancer Tissue Resource
lists: DIAN - Dominantly Inherited Alzheimer Network
lists: ZCre
lists: Mexican Health and Aging Study
lists: NIDDK Inflammatory Bowel Disease Genetics Consortium
lists: Acute Liver Failure Study Group
lists: Diabetes Prevention Type 1
lists: NIA Mouse cDNA Project Home Page
lists: Type 1 Diabetes Resource
lists: BARI 2D
lists: Childhood Liver Disease Research and Education Network
lists: EuMMCR
lists: Living Biobank
lists: Nonalcoholic Steatohepatitis Clinical Research Network
lists: Drug-Induced Liver Injury Network
lists: HALT-C Trial
lists: SEARCH for Diabetes in Youth
lists: Viral Resistance to Antiviral Therapy of Chronic Hepatitis C
lists: GenitoUrinary Development Molecular Anatomy Project
lists: Medical Therapy of Prostatic Symptoms
lists: Type 1 Diabetes Genetics Consortium
lists: Texas A and M Institute for Genomic Medicine
lists: Expression Patterns for C. elegans promoter GFP fusions
lists: ATCC
lists: Genes to Cognition - Biological Resources
lists: TCAG
lists: World Federation for Culture Collections
lists: Italian Rett Syndrome database
lists: Addgene
lists: Rat Resource and Research Center
lists: National Center for Marine Algae and Microbiota
lists: UD Chick EST Project
lists: NCI Mouse Repository
lists: CGSC
lists: International Gene Trap Consortium
lists: Honey Bee Brain EST Project
lists: Marine Biological Laboratory
lists: NBRC
lists: FANTOM DB
lists: UMMC Center for Psychiatric Neuroscience Labs and Facilities
lists: Gene Expression Nervous System Atlas
lists: Washington National Primate Research Center
lists: Primate Embryo Gene Expression Resource
lists: Peromyscus Genetic Stock Center
lists: Islet Cell Resource Centers
lists: National Natural Toxins Research Center
lists: GenomEUtwin
lists: Drosophila Genomics Resource Center
lists: Human Tissue and Organ for Research Resource (HTORR)
lists: Special Mouse Strains Resource
lists: New England National Primate Research Center
lists: Addiction Research GPCR Assay Bank
lists: Mutant Mouse Resource and Research Center
lists: Penn Induced Pluripotent Stem Cell Core Facility
lists: neuromice
lists: EUROpean Saccharomyces Cerevisiae ARchive for Functional Analysis
lists: ShARM
lists: NIH NeuroBioBank
lists: NIH Human Pluripotent Stem Cell Registry
lists: Phoenix
lists: The Cancer Genome Atlas
lists: MUGEN Mouse Database
lists: Coriell Cell Repositories
lists: RIKEN BioResource Center
lists: Pleiades Promoter Project: Genomic Resources Advancing Therapies for Brain Disorders
lists: Retinal Degeneration Rat Model Resource
lists: Harvard Brain Tissue Resource Center
lists: Glioma Molecular Dignostic Initiatives
lists: Source BioScience LifeSciences
lists: National Mesothelioma Virtual Bank
lists: SpecimenCentral.com
lists: Arizona Cancer Center Tumor Bank
lists: Cryogenic Laboratories, Inc
lists: Partners HealthCare Biorepository
lists: National Neurological AIDS Bank
lists: Mount Sinai Allograft Technologies
lists: EuroBioBank
lists: NICHD Brain and Tissue Bank for Developmental Disorders
lists: Roswell Park Data Bank and BioRepository
lists: Hungarian Neurological-Psychiatric Biobank
lists: Roslin Cells
lists: Vitiligo Biobank
lists: NAF Ataxia Tissue Donation
lists: HipSci
lists: Cellartis
lists: KaLy-Cell
lists: Lions Eye Institute for Transplant and Research
lists: Endocells
lists: Leibniz Institute for Prevention Research and Epidemiology Biobank
lists: DCI Tissue and Blood Procurement Shared Resource
lists: Childhood Leukaemia Cell Bank
lists: Cleveland Clinic Genomic Medicine Biorepository
lists: Sunnybrook Tumour Bank
lists: Massachusetts Human Stem Cell Bank
lists: Liverpool Tissue Bank
lists: Dr. Donald MacLellan Tissue Bank
lists: OneLegacy
lists: Arizona Biospecimen Locator
lists: ProMPT - Prostate Cancer Mechanisms of Progression and Treatment
lists: British Columbia Gynaecologic Tissue Bank
lists: Guthy-Jackson Repository for Neuromyelitis Optica
lists: Biorepository Alliance of Georgia for Oncology
lists: ITOR Biorepository Services
lists: Canadian Tumour Repository Network
lists: Progeria Cell and Tissue Bank
lists: Wright Medical Technology, Inc.
lists: Accelerated Cure Project MS Repository
lists: Integrated Biobank of Luxembourg
lists: International Biologics, LLC
lists: Canadian Breast Cancer Foundation Tumor Bank
lists: AIDS and Cancer Specimen Resource
lists: Canadian Virtual Brain Tumour Bank
lists: UAB Comprehensive Cancer Center Tissue Procurement Shared Facility
lists: Cancer Research Network of the FRSQ
lists: Biobanking and Biomolecular Resources Research Infrastructure (BBMRI)
lists: Bangalore Brain Bank
lists: Roslin Wellcome Trust Tick Cell Biobank
lists: Osiris Therapeutics
lists: LifePoint, Inc.
lists: American Donor Services
lists: Life Alaska Donor Services, Inc.
lists: Biobank Graz
lists: UCSF DNA Bank
lists: Store-a-Tooth Stem Cell Bank
lists: UC San Diego Biorepository
lists: START Tumor Bank
lists: Donor Alliance
lists: University of Minnesota Tissue Procurement Facility
lists: NEALS Sample Repository
lists: South Texas Blood and Tissue Center
lists: New Life Generation, Inc.
lists: Transplant Services Center
lists: Nevada Donor Network, Inc.
lists: OECI - Tubafrost: The European Human Frozen Tissue Bank
lists: Cincinnati Biobank Core Facility
lists: OHSU Biolibrary
lists: Ochsner Blood Bank
lists: Brown University Rhode Island Biobank Core Facility
lists: Myeloma Tissue Bank
lists: US Biomax
lists: LifeShare Transplant
lists: BioStorage Technologies
lists: Duke Biobank
lists: UAB Alzheimer's Disease Center
lists: Duke Biospecimen Repository
lists: Center for Organ Recovery and Education - CORE
lists: ReproTech, Ltd.
lists: Ludwig Boltzman Tumour Bank
lists: Lifesharing Tissue Services
lists: Donor Network of Arizona
lists: Wales Cancer Bank
lists: M2Gen Biorepository
lists: Medical College of Georgia Tumor Bank
lists: Cellular Technology Ltd Cryopreserved PBMC
lists: onCore UK
lists: Doheny Eye and Tissue Transplant Bank
lists: Dana Farber Tissue Bank
lists: Karolisnka Biobank
lists: Rocky Mountain MS Center Tissue Bank
lists: Marshfield Clinic Biobank
lists: Mantle Cell Lymphoma Cell Bank
lists: Neuroendocrine Tumors Biobank
lists: Case Comprehensive Cancer Center Biorepository and Tissue Processing Core Facility
lists: Maryland Brain Collection
lists: Angioma Alliance DNA/Tissue Bank and Patient Registry
lists: Wisconsin International Stem Cell Bank
lists: Mid-America Transplant Services
lists: Autism Genetic Resource Exchange
lists: Moffitt Cancer Center Tissue Core
lists: PROCURE Quebec Prostate Cancer Biobank
lists: AIDS Malignancy Bank
lists: University of Chicago Human Tissue Resource Center Biospecimen Banking
lists: UAB SPORE Biorepository Banks
lists: Bone Bank Allografts
lists: Allograft Innovations, LLC
lists: Origene China
lists: Louisiana Organ Procurement Agency - LOPA
lists: EDAR study: biomarkers for Alzheimer's disease
lists: Cooperative Human Tissue Network
lists: UMass Cancer Center Tissue and Tumor Bank
lists: Crimson Biospecimen Core
lists: ScienceCare
lists: St. James Hospital Cryobiology Laboratory Stem Cell Facility
lists: BrainNet Europe
lists: Essential Tremor Centralized Brain Repository
lists: South Dakota Lions Eye Bank
lists: Estonian Genome Center
lists: Cureline Biopathology
lists: Stem-Health Hellas Stem Cell Bank
lists: LifeTek OrthoBiologics
lists: TissueNet
lists: Swedish Regional Biobank
lists: Cryo-Save
lists: National Surgical Adjuvant Breast and Bowel Project Tissue Bank
lists: University of Virginia Tissue Culture Facility
lists: KORA-gen
lists: Swiss Biobank
lists: NIGMS Human Genetic Cell Repository
lists: NINDS Repository
lists: eyeGENE
lists: NHGRI Sample Repository for Human Genetic Research
lists: Biobank of Hospital Clinic - IDIBAPS
lists: Regional Biobank of Central Norway
lists: SeraCare Lifesciences: Sample Storage Management and Processing Services
lists: NEI-AREDS Genetic Repository
lists: COHORT Repository
lists: JP McCarthy Cord Stem Cell Bank
lists: Michigan Neonatal Biobank
lists: SepNet Central Sample Bank
lists: LifeLink Tissue Bank
lists: SPH Biorepository
lists: Cardio-Facio-Cutaneous Syndrome International Biobank
lists: DCI Donor Services
lists: LifeGift Organ Donation Center
lists: Inflammatory Breast Cancer Biobank
lists: University of Miami Tissue Bank
lists: LifeNet Health of Florida
lists: UTHealth BioBank
lists: Southwest France Tumour Bank
lists: Southern Alberta Organ and Tissue Donation Program
lists: Blood and Tissue Center of Central Texas
lists: MD Anderson Clone Bank
lists: Community Tissue Services - CTS
lists: Aurora Healthcare Biorepository
lists: Human Biological Data Interchange
lists: Bio-Options
lists: Cancer Center Tissue Bank - Fudan University
lists: British Columbia Tumour Tissue Repository
lists: BioReliance Biorepository
lists: New York Firefighters Skin Bank
lists: GSDS - Golden State Donor Services
lists: UK Multiple Sclerosis Tissue Bank
lists: UCL/UCLH Biobank for Studying Health and Disease
lists: Tumorbank Bern
lists: IPBIR - Integrated Primate Biomaterials and Information Resource
lists: Stanford Tissue Bank
lists: HD Community BioRepository
lists: Autism Research Resource
lists: Yerkes Collection Non-Human Primate Resource
lists: Hollings Cancer Center Tissue Biorepository and Research Pathology Services Shared Resource
lists: Washington Regional Transplant Community - WRTC
lists: Vanderbilt BioVU
lists: Jackson Laboratory
lists: Central England Haemato-Oncology Research Biobank
lists: Genethon DNA and Cell Bank
lists: University of Michigan Biorepository
lists: Simons Simplex Collection
lists: Gift of Life Donor Program
lists: Queen Square Brain Bank
lists: SeqWright Biorepository
lists: Telethon Network of Genetic Biobanks
lists: New York Organ Donor Network - NYODN
lists: Wistar Institute Collection at Coriell
lists: USIDNET DNA and Cell Repository
lists: Brain Bank for Autism
lists: Living Legacy Foundation of Maryland
lists: Beaumont Hospitals Biobank
lists: Central Biomaterial Bank - German Heart Failure Network
lists: PXE International Registry and BioBank
lists: Southeast Tissue Alliance, Inc. - SETA
lists: National Biobank of Finland
lists: CDC Cell and DNA Repository
lists: ILSbio
lists: California Cryobank, Inc.
lists: ETEX Corporation
lists: Leiomyosarcoma Cell and DNA Repository
lists: HIV Biobank
lists: Human Reference Genetic Material Repository
lists: Hema-Quebec
lists: LifeSource
lists: National Temporal Bone Pathology Resource Registry
lists: Blood Borne Pathogens Laboratory
lists: Susan G. Komen Tissue Bank
lists: Ohio State Biorepository
lists: Alabama Organ Center
lists: TRACK TBI Network
lists: National Stem Cell Bank
lists: Bioreclamation
lists: Biobanque de Picardie
lists: Ontario Tumour Bank
lists: UK Stem Cell Bank
lists: Fox Chase Biosample Repository Core Facility
lists: Loma Linda University Cancer Center Biospecimen Laboratory
lists: Barth Syndrome Biorepository
lists: Interpore Cross International
lists: Human Tissue Resource Network
lists: California Transplant Services
lists: National Cancer Institute Biorepositories
lists: LifeCenter Organ Donor Network
lists: HemaCare Corp.
lists: Human Brain and Spinal Fluid Resource Center
lists: Brain and Body Donation Program
lists: Kings College London Infectious Diseases BioBank
lists: Conticabase - European Sarcoma Database and Tumour Bank
lists: Upstate New York Transplant Services
lists: Donor Services of Indiana
lists: Minnesota Liver Tissue Cell Distribution System
lists: Research Tissue Repository - University of Connecticut
lists: Mount Sinai Biobank
lists: Rocky Mountain Tissue Bank
lists: LifeCenter Northwest
lists: International Histocompatibility Cell and DNA Bank
lists: Regional Tissue Bank
lists: Northwest Tissue Services
lists: Washington University Tissue Bank
lists: Capital Biosciences
lists: Lawson Brain Tumour Tissue Bank
lists: Andalusian Regional Tumour Bank
lists: Protein Biotechnologies
lists: Brainbow mouse resource at Jackson Labs
lists: RTI Donor Services
lists: University Andrology Laboratory
lists: Cancer Control using Population-based Registries and Biobanks
lists: UCSD Experimental Neuropath Laboratory
lists: BioRep
lists: da Vinci European Biobank
lists: Wisconsin Tissue Bank
lists: Indiana Organ Procurement Organization - IOPO
lists: Quebec Leukemia Cell Bank
lists: LifeBanc
lists: Alzheimer's and Dementia Resource Center
lists: Tayside Tissue Bank
lists: Biobank Suisse
lists: Florida Brain Bank
lists: Erasmus MC Tissue Bank
lists: Hackensack University Tissue Bank
lists: World BioBank
lists: University of Zurich SCRM - Cell-and Tissue Biobank
lists: Tumorbank Basel Foundation
lists: LifeLink Foundation
lists: Gift of Hope Organ and Tissue Donor Network
lists: St. Gallen Lung Biopsy Biobank
lists: UNOS - United Network for Organ Sharing
lists: UCSF AIDS Specimen Bank
lists: MD Anderson Pancreas Tissue Bank
lists: Kentucky Organ Donor Affiliates (KODA)
lists: German Biobank Registry
lists: Tennessee Donor Services
lists: UC Davis Biorepository
lists: MD Anderson Gynecologic Cancer Tissue Bank
lists: Alamo Tissue Service, Ltd.
lists: NeuroBiobank Munich
lists: Brain-Net
lists: Duke University Kathleen Price Bryan Brain Bank
lists: Fairfax Cryobank
lists: Lifeline of Ohio
lists: University of Pittsburgh Brain Tissue Donation Program
lists: Medical University of Vienna Institute of Neurology
lists: NMDS - New Mexico Donor Services
lists: South Carolina Biorepository System
lists: CryoLife, Inc.
lists: Tissue Banks International - TBI
lists: NDRI Dorsal Root Ganglia Program
lists: University of Texas Tumor Bank
lists: Zebrafish International Resource Center
lists: RLS Foundation Brain Bank
lists: Dementia Brain Bank Research Program
lists: St. Louis University Alzheimer's Brain Bank
lists: Beta Cell Biology Consortium
lists: UMKC Neuroscience Brain Tissue Bank and Research Laboratory
lists: Parkinsons UK Brain Bank Duplicate
lists: Einstein-Montefiore Institute for Clinical and Translational Research Biorepository
lists: University of Rochester Program for Brain Tumors and Spinal Tumors
lists: Case Western Reserve Tissue Procurement and Histology Core Facility
lists: Human Tissue Resource Network
lists: Boston University Biospecimen Archive Research Core
lists: Adenoma Polyp Tissue Bank
lists: Brown Brain Tissue Resource Center
lists: Texas A and M Health Science Center MSC Distribution
lists: JAX Cre Repository
lists: Jackson Laboratory Neurobiology
lists: WaNPRC Pathology and Tissue Program
lists: Geisinger Biobank
lists: KI Biobank
lists: KI Biobank - KOL
lists: Cell Line Knowledge Base
lists: KI Biobank - SCI
lists: Janus Serum Bank
lists: KI Biobank - GEMS
lists: KI Biobank - TBI
lists: KI Biobank - EIMS
lists: KI Biobank - IMSE
lists: Vector Database
lists: KI Biobank - BROAD
lists: KI Biobank - SBP
lists: KI Biobank STAGE-ADHD
lists: KI Biobank - STANLEY
lists: KI Biobank - STAR
lists: KI Biobank - EuroClot
lists: KI Biobank - Economical Behavior
lists: CATSS - Child and Adolescent Twin Study in Sweden
lists: DOGSS
lists: UMAS University Hospital - Biobanks of the Department of Clinical Pathology and Cytology
lists: KI Biobank - SATSA
lists: FaceBase Biorepository
lists: KI Biobank - SALTY
lists: KI Biobank - STAGE
lists: KI Biobank - TwinGene
lists: BIOAIR - BIOmarkers in severe Chronic AIRway Disease
lists: KI Biobank - NOAK
lists: OLIN - Obstructive Lung disease in Northern Sweden
lists: Cancer of the Prostate in Sweden (CAPS)
lists: KI Biobank - CEFALO
lists: ICAP - Integrated analysis of prostate cancer
lists: LIBRO-1: Individualized prediction and prevention of breast cancer
lists: KI Biobank - PROCAP
lists: SCALE - Scandinavian lymphoma etiology
lists: SPSAC - Stockholm PSA Cohort
lists: KI Biobank - Tissue Biobank
lists: KI Biobank - CEFAM
lists: KI Biobank - PAROKRANK
lists: KI Biobank - Sodertaljehjartan
lists: CreZOO
lists: European Mouse Mutant Archive
lists: Toronto Centre for Phenogenomics
lists: CMMR - Canadian Mouse Mutant Repository
lists: NHMRC Australian PhenomeBank
lists: Australian Phenomics Network
lists: International Mouse Phenotyping Consortium (IMPC)
lists: ZMP
lists: Sanger Mouse Resources Portal
lists: Chimpanzee Biomedical Research Resource
lists: Owl Monkey Breeding and Research Resource
lists: Squirrel Monkey Breeding and Research Resource
lists: Human Developmental Biology Resource
lists: MouseBook
lists: Ambystoma Genetic Stock Center
lists: Chordoma Foundation Biobank
lists: Biobank Ireland Trust
lists: UCSF Brain Tumor Tissue Bank
lists: Bloomington Drosophila Stock Center
lists: NIDDK Central Repository
lists: VA Biorepository Brain Bank
lists: University of Florida DNA and Tissue Bank
lists: Wake Forest Cynomolgus Breeding Colony
lists: CCUG: Culture Collection; University of Goteborg; Sweden
lists: Dictyostelium discoideum genome database
lists: Cooperative Human Tissue Network Western Division at Vanderbilt University Medical Center
lists: NCI Breast and Colon Cancer Family Registries
lists: British Columbia Breast Cancer Tumour Bank
lists: Wake Forest Vervet Research Colony
lists: NIMH Stem Cell Center
lists: Musculoskeletal Transplant Foundation - MTF
lists: NIMH Repository and Genomics Resources
lists: Peginterferon and Ribavirin for Pediatric Patients with Chronic Hepatitis C
lists: Collaborative Studies on Genetics of Alcoholism
lists: National Swine Resource and Research Center
lists: National Center for Research Resources - Primate Resources
lists: Confederation of Cancer Banks
lists: zfishbook
lists: SIU CADRD Dementia Brain Autopsy Program
lists: Allograft Resources
lists: AASK Clinical Trial and Cohort Study
lists: I3-CRB: Interoperable IT Infrastructure for Biological Resources Centres / Biobanks - France
lists: Stanford Center for Narcolepsy
lists: Xenopus Gene Collection
lists: Mammalian Gene Collection
lists: Parkinsons UK Brain Bank
lists: Zebrafish Gene Collection
lists: Stanley Brain Collection
lists: Boston Area Community Health Survey
lists: Central New York Eye and Tissue Bank
lists: Chromosome 7 Annotation Project
lists: New York Brain Bank at Columbia University
lists: Deltagen and Lexicon Knockout Mice and Phenotypic Data Resource
lists: National Cell Repository for Alzheimer's Disease
lists: NIA Aged Rodent Colonies
lists: Knockout Mouse Project Repository
lists: NINDS/UCLA Repository for Parkinson's Disease Mouse Models
lists: Aging Cell Repository
lists: Mouse Mutagenesis Center for Developmental Defects
lists: National NeuroAIDS Tissue Consortium
lists: NIA Nonhuman Primate Tissue Bank
lists: National Alzheimer's Coordinating Center
lists: NIA Mutant Mouse Aging Colony Handbook
lists: JAX Mice: Neural Tube Defects
lists: Caenorhabditis Genetics Center
lists: Tulane Stem Cell Research and Regenerative Medicine Tissue Culture Core
lists: NUgene Project
lists: JAX Neuroscience Mutagenesis Facility
lists: Hyper Cell Line Database
lists: CHARTER - CNS HIV Antiretroviral Therapy Effects Research
lists: BayGenomics
lists: Alzheimer's Disease Cooperative Study
lists: Baboon Research Resouces
lists: Rhesus Monkey Breeding and Research
lists: Mouse Mutant Resource
lists: EMD4Biosciences
lists: German Gene Trap Consortium
lists: STRIDE Virtual Biospecimen Bank
lists: Stanford/VA Aging Clinical Research Center
lists: Spanish National Tumour Bank Network
lists: Bioserve Global BioRepository
lists: Saint-Luc Tumour Bank
lists: Virgin Health Bank
lists: UM Brain Endowment Bank
lists: Manitoba Breast Tumor Bank
lists: NIMH Brain Tissue Collection
lists: UCL-RFH BioBank
lists: Coriell Institute Stem Cell Biobank
lists: MassGeneral Institute for Neurodegenerative Disease
lists: Mayo Clinic Jacksonville: Neuropathology and Microscopy
lists: NYU Alzheimer's Disease Center
lists: Brain Research Institute Biobank Resources
lists: Johns Hopkins Alzheimer's Disease Research Center
lists: Rush Alzheimer's Disease Center
lists: Massachusetts Alzheimer's Disease Research Center
lists: University of Kentucky's Alzheimer's Disease Center
lists: Michigan Alzheimer's Disease Center Brain Bank
lists: Washington University Knight Alzheimer's Disease Research Center
lists: Mount Sinai Alzheimer's Disease Research Center
lists: Taub Institute for Research on Alzheimers Disease and the Aging Brain
lists: Institute for Basic Research in Developmental Disabilities
lists: Vietnam Era Twin Registry Biospecimen Repository
lists: Study of Womens Health Across the Nation (SWAN) Repository
lists: Dynamics of Health Aging and Body Composition (Health ABC)
lists: University of Pennslyvania Brain Bank
lists: Layton Center Biomarkers and Genetics
lists: MUSC Center on Aging Campbell Neuropathology Laboratory
lists: UT Southwestern ADC Brain Tissue Donation Program
lists: KI Biobank - Parkinson
lists: KI Biobank - EXT
lists: GIA Brain Bank Program
lists: KI Biobank - ALF
lists: KI Biobank - HARMONY
lists: Twin Study of Child and Adolescent Development - TCHAD
lists: SHEEP - Stockholm Heart Epidemiology Program
lists: CreZoo
lists: Fleming Database
lists: Los Angeles Family and Neighborhood Survey
lists: Health and Retirement Study
lists: Iowa 65+ Rural Health Study
lists: National Long Term Care Survey
lists: National Social Life Health and Aging Project (NSHAP)
lists: Framingham Heart Study
lists: Integrated Cell Lines
lists: Chronic Renal Insufficiency Cohort Study
lists: PrecisionMed
lists: Biopta
lists: Manhattan HIV Brain Bank
lists: LifeGene
lists: Puget Sound Blood Center
lists: Fisher BioServices
lists: National Psoriasis BioBank
lists: StemCure Tissue Banking
lists: ProMedDx
lists: Biological Resource Centre - National Institute for Cancer Research
lists: Coriell Biobank
lists: StemSave
lists: Dublin Brain Bank
lists: Mayo Mitochondrial Disease Biobank
lists: NIA Aged Rodent Tissue Bank
lists: MVZ Collections
lists: CARTaGENE
lists: European Collection of Cell Cultures
lists: UK DNA Banking Network
lists: Biobanc USA
lists: Rutgers Cell and DNA Repository
lists: Genetic Alliance Biobank
lists: Hunt Biobank
lists: Advanced Biohealing, Inc.
lists: Edinburgh Brain and Tissue Banks
lists: JCM
lists: Movement Disorders Biobank
lists: Surgical Biologics - a MiMedx Group Company
lists: Chernobyl Tissue Bank
lists: Tissue Solutions
lists: Conversant Biologics Inc.
lists: Narayana Hrudayalaya Tissue Bank and Stem Cell Research Center
lists: AlloSource
lists: PathServe
lists: UC Davis Alzheimers Disease Center - Resources
lists: Asterand
lists: RTI Biologics
lists: Mayo Clinic Biobank
lists: Lifelines Biobank
lists: Mayo Validation Support Services Biobank
lists: LifeNet Health
lists: Medical Biobank
lists: Fraunhofer Institute for Biomedical Engineering
lists: BWH Specimen Bank
lists: University of Minnesota Bionet - Academic Health Center
lists: DF/HCC DNA Resource Core
lists: Indiana Alzheimer Disease Center
lists: UK Biobank
lists: National Institute on Drug Abuse Center for Genetic Studies
lists: Oregon Brain Bank
lists: Biologic Specimen and Data Repository Information Coordinating Center (BioLINCC)
lists: Northwestern CNADC Tissue Bank / Neuropathology Core
lists: Loyola University Medical Center / Hines VA Brain Bank
lists: Trinity Biobank
lists: SAPALDIA
lists: Ohio U Diabetes Endocrine Biorepository
lists: National Cell Culture Center
lists: Diabetic Complications Consortium
lists: Xenbase
lists: Blueprint Epigenome
lists: EBiSC
lists: Biospecimens/Biorepositories: Rare Disease-HUB (RD-HUB)
lists: Parkinson's Progression Markers Initiative
lists: OriGene
lists: University of Nottingham NASC Nottingham Arabidopsis Stock Centre
is related to: Rat Resource and Research Center
is related to: Honey Bee Brain EST Project
is related to: Islet Cell Resource Centers
is related to: Special Mouse Strains Resource
is related to: NIH Human Pluripotent Stem Cell Registry
is related to: Harvard Brain Tissue Resource Center
is related to: Louisiana Organ Procurement Agency - LOPA
is related to: Washington Regional Transplant Community - WRTC
is related to: Minnesota Liver Tissue Cell Distribution System
is related to: Zebrafish International Resource Center
is related to: Bloomington Drosophila Stock Center
is related to: National Swine Resource and Research Center
is related to: Xenopus Gene Collection
is related to: Mammalian Gene Collection
is related to: Zebrafish Gene Collection
is related to: Mouse Mutagenesis Center for Developmental Defects
is related to: NIA Mutant Mouse Aging Colony Handbook
is related to: Manhattan HIV Brain Bank
is related to: National Institute on Drug Abuse Center for Genetic Studies
is related to: International Mouse Strain Resource
is related to: Jackson Laboratory
is related to: Rat Genome Database (RGD)
is related to: VISTA Enhancer Browser
is related to: GenitoUrinary Development Molecular Anatomy Project
is related to: Coriell Cell Repositories
is related to: NICHD Brain and Tissue Bank for Developmental Disorders
is related to: Human Brain and Spinal Fluid Resource Center
is related to: UM Brain Endowment Bank
has parent organization: One Mind for Research
has parent organization: Neuroscience Information Framework
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The community can contribute to this resource, Data are licensed by their respective owners, Use and distribution is subject to the Terms of Use by the original resource |
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nlx_143622 |
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https://neuinfo.org/mynif/search.php?q=*&cf=Biospecimen&t=indexable&nif=nlx_143622-1 http://neuinfo.org/onemind/index.php?q=*&b=0&r=20 |
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SCR_004193 |
One Mind: One Voice Bio-repository Cosmic Landscape, One Mind Biospecimen Banks |
2026-08-11 09:40:52 |
0 |
Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
Resource Report
Resource Website
10000+ mentions
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Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) (RRID:SCR_012820)
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RCSB PDB
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service resource, data or information resource, storage service resource, database, data repository
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Collection of structural data of biological macromolecules. Database of information about 3D structures of large biological molecules, including proteins and nucleic acids. Users can perform queries on data and analyze and visualize results.
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3-dimensional, annotation, molecule, nucleic acid, protein, visualization, sequence, function, macromolecule, ligand, model, dna, x-ray crystallography, ribosome, structure, oncogene, nucleic acids, molecular structure, cryomicroscopy, gold standard, FASEB list
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is used by: Structural Genomics Consortium
is used by: Ligand Expo
is used by: DARC - Database for Aligned Ribosomal Complexes
is used by: FireDB
is used by: Protein Data Bank Bind Database
is used by: Protein Data Bank Site
is used by: NIF Data Federation
is used by: ChannelPedia
is used by: MobiDB
is used by: BALBES
is used by: Structural Antibody Database
is used by: BioLiP
is recommended by: NIDDK Information Network (dkNET)
is recommended by: National Library of Medicine
is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
is listed by: re3data.org
is affiliated with: EMDataResource.org
is affiliated with: ConSurf Database
is related to: pdb-data
is related to: PDB2MultiGif
is related to: GlyProt
is related to: pdb-care
is related to: pdb2linucs
is related to: GlyVicinity
is related to: GlyTorsion
is related to: GlySeq
is related to: AffinDB
is related to: StatAlign
is related to: Community Structure-Activity Resource
is related to: Binding MOAD
is related to: ConSurf Database
is related to: glycosciences.de
is related to: DOMINE: Database of Protein Interactions
is related to: Jenalib: Jena Library of Biological Macromolecules
is related to: SynSysNet
is related to: EMDataResource.org
is related to: PDBe - Protein Data Bank in Europe
is related to: TFinDIT
is related to: HOLLOW
is related to: ccPDB - Compilation and Creation of datasets from PDB
is related to: DOMMINO - Database Of MacroMolecular INteractiOns
is related to: InterEvol database
is related to: Polbase
is related to: PoSSuM
is related to: ProtChemSI
is related to: RNA CoSSMos
is related to: PDBsum
is related to: Worldwide Protein Data Bank (wwPDB)
is related to: canSAR
is related to: CAPS Database
is related to: Dockground: Benchmarks, Docoys, Templates, and other knowledge resources for DOCKING
is related to: Combinatorial Extension (CE)
is related to: Metalloprotein Site Database
is related to: PDBj - Protein Data Bank Japan
is related to: Statistical Torsional Angles Potentials of NMR Refinement Database
is related to: Metalloprotein Ligand Interaction Database
is related to: CARP
is related to: PDBTM
is related to: RNA FRABASE - RNA FRAgments search engine and dataBASE
is related to: AmiGO
is related to: ConsensusPathDB
is related to: Biological Magnetic Resonance Data Bank (BMRB)
is related to: DNA DataBank of Japan (DDBJ)
is related to: FlyMine
is related to: NCBI Protein Database
is related to: NCBI Nucleotide
is related to: FunTree
is related to: IndelFR - Indel Flanking Region Database
is related to: NMR Restraints Grid
is related to: Enzyme Structures Database
is related to: Electron Microscopy Data Bank at PDBe (MSD-EBI)
is related to: Worldwide Protein Data Bank (wwPDB)
is related to: DNA DataBank of Japan (DDBJ)
is related to: PDBe - Protein Data Bank in Europe
is related to: MINAS - Metal Ions in Nucleic AcidS
is related to: PDBj - Protein Data Bank Japan
has parent organization: University of California at San Diego; California; USA
has parent organization: Rutgers University; New Jersey; USA
is parent organization of: RCSB PDB Software Tools
is parent organization of: Protein Data Bank Markup Language
is parent organization of: Ligand Expo
works with: CellPhoneDB
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NIH ;
DOE ;
NSF DBI-1338415 |
PMID:12037327 |
Public, Acknowledgement requested |
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nif-0000-00135, SCR_017379, r3d100010327 |
http://www.rcsb.org, http://www.pdb.org, |
http://www.rcsb.org/pdb/ |
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SCR_012820 |
RCSB, Research Collaboratory for Structural Bioinformatics Protein Data Bank, The Protein Data Bank, PDB, Protein Databank, RCSB Protein Data Bank, Protein Data Bank |
2026-08-11 09:42:40 |
12459 |
