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Norway

Suggested Data Repositories (NIDDK)

Where can I deposit my data?

We have organized a list of data repositories that are recommended by the following sources: NIDDK domain experts, Nature Scientific Data, PlosOne, NLM NIH Data Sharing Repositories, Science. It is generally best practice to deposit data into a discipline-specific and community recognized repository if one is available, or into an institutional or generalist repository if no suitable specialist repository is available.

By scientific disciplines


NIDDK-specific repositories

Respository Name RRID Description Type of Data Submitting Data Accessing Data Guidelines/Standards Recommended by
NIDDK Central Repository RRID:SCR_006542 The NIDDK Central Repository stores biosamples, genetic and other data collected in designated NIDDK-funded clinical studies. The purpose of the NIDDK Central Repository is to expand the usefulness of these studies by allowing a wider research community to access data and materials beyond the end of the study The NIDDK Central Repository stores biosamples, genetic and other data collected in designated NIDDK-funded clinical studies. Genetic and other data collected in designated NIDDK-funded clinical studies How to submit data to NIDDK Central Repository How to access NIDDK Central Repository data NIDDK, NLM/NIH
The AMP-T2D Knowledge Portal RRID:SCR_003743 The AMP-T2D Knowledge Portal is the NIDDK-designated repository being developed as part of the Accelerating Medicines Partnership (AMP), a public-private partnership between the National Institutes of Health (NIH), the U.S. Food and Drug Administration (FDA), 10 biopharmaceutical companies, and multiple non-profit organizations that is managed through the Foundation for the NIH (FNIH) for collection of various types of molecular data such as DNA sequences, functional and epigenomic information, and clinical data from studies on type 2 diabetes and its macro- and microvascular complications from human, cell-based and animal model biosamples, analytical results and research tools towards improving current efforts to develop new therapies for complex, heterogeneous diseases, including type 2 diabetes. Array, exome sequencing, whole genome sequencing data How to submit data to the AMP-T2D Knowledge Portal How to access AMP-T2D Knowledge Portal data   NIDDK



NIH-supported repositories (for complete and current list of NIH repositories click here)

Respository Name RRID Description Type of Data Submitting Data Accessing Data Guidelines/Standards Recommended by
Biological General Repository for Interaction Datasets (BioGRID) RRID:SCR_007393 BioGRID is a curated biological database of protein-protein interactions, genetic interactions, chemical interactions, and post-translational modifications from major model organism species. All interaction data are freely provided through our search index and available via download in a wide variety of standardized formats. Molecular interaction data How to submit data to BioGRID How to access BioGRID data Molecular interaction data should be deposited with a member of the International Molecular Exchange Consortium (IMEx), following the MIMIx recommendations NIDDK; NLM/NIH
Cell Image Library RRID:SCR_003510 The Cell Image Library, accepts image data sets that are too large for publishers to store, and provides access to the biomedical community. There are 10,000 datasets in 20TB of uploaded data as of mid-2018. The library inherits data from the Cell Centered Database at UCSD. Since its launch in 2010, the site has had 721,00 visitors and was cited by 175 research publications. Microscopic imaging data How to submit data to Cell Image Library How to access Cell Image Library data   NIDDK; NLM/NIH
ClinicalTrials.gov RRID:SCR_002309 A database of privately and publicly funded clinical studies conducted around the world. Clinical trial How to submit clinicl trials How to access clinical trials   NIDDK; NLM/NIH; Nature Scientific Data
Database of Interacting Proteins (DIP) RRID:SCR_003167 The DIP database, a founding member of the International Molecular Exchange Consortium (IMEx: https://www.imexconsortium.org), catalogs experimentally determined interactions between proteins. It combines information from a variety of sources to create a single, consistent set of protein-protein interactions. The data stored within the DIP database are manually curated and include, when available, detailed information on the interacting regions, mutations and post-translational modifications that affect each interaction. Protein interaction data How to submit data to DIP How to access DIP data Molecular interaction data should be deposited with a member of the International Molecular Exchange Consortium (IMEx), following the Minimum Information about a Molecular Interaction Experiment (MIMIx) recommendations NIDDK; NLM/NIH; Nature Scientific Data; PLOS
FlyBase: A Drosophila Genomic and Genetic Database RRID:SCR_006549 Drosophila Genomic and Genetic database that includes proteomics data, microarrays and Tiling BAC's.   How to submit data to Flybase How to access Flybase data   NIDDK; NLM/NIH
International Mouse Phenotyping Consortium (IMPC) RRID:SCR_006158 Phenotype data on knockout mouse lines.   How to submit data to IMPC How to access IMPC data   NIDDK
Metabolomics Workbench (MetWB) RRID:SCR_013794 The Metabolomics Program's Data Repository and Coordinating Center (DRCC), housed at the San Diego Supercomputer Center (SDSC), University of California, San Diego, has developed the Metabolomics Workbench. MetWB will serve as a national and international repository for metabolomics data and metadata and will provide analysis tools and access to metabolite standards, protocols, tutorials, training, and more Metabolomics data and metadata How to submit data to MetWB How to access MetWB data   NIDDK; NLM/NIH: PLOS
Mouse Genome Informatics (MGI) RRID:SCR_006460 MGI is the international database resource for the laboratory mouse, providing integrated genetic, genomic, and biological data to facilitate the study of human health and disease.   How to submit data to MGI How to access MGI data   NIDDK; NLM/NIH
PeptideAtlas RRID:SCR_006783 PeptideAtlas is a multi-organism, publicly accessible compendium of peptides identified in a large set of tandem mass spectrometry proteomics experiments. Mass spectrometer output files are collected for human, mouse, yeast, and several other organisms, and searched using the latest search engines and protein sequences. Tandem mass spectrometry proteomics data of peptides How to submit data to PeptideAtlas How to access Peptide Atlas data Submit proteomics data to members of ProteomeXchange consortium (listed below), following the MIAPE recommendations NIDDK; Nature Scientific Data; PLOS
PhysioNet RRID:SCR_007345 The PhysioNet Resource is intended to stimulate current research and new investigations in the study of complex biomedical and physiologic signals. It offers free web access to large collections of recorded physiologic signals (PhysioBank) and related open-source software (PhysioToolkit). Physiological data How to submit data to PhysioNet How to access PhysioNet data   NIDDK; NLM/NIH; PLOS
Protein Data Bank (PDB) RRID:SCR_012820 The mission of the RCSB Protein Data Bank (PDB) is to Sustain a unique data resource of three-dimensional biomolecular structure   How to submit data to PDB How to access PDB data   NIDDK; NLM/NIH
The Network Data Exchange (NDEx) RRID:SCR_003943 NDEx is an online commons where scientists can upload, share, and publicly distribute biological networks and pathway models. The NDEx Project maintains a web-accessible public server, a documentation website, provides seamless connectivity to Cytoscape as well as programmatic access using a variety of languages including Python and Java. NDEx users can easily create accounts or sign in using their Google credentials thanks to the supported open authentication (OAUTH2) method and mint DOIs for their networks to use in publications or include in other resources for long term access.   How to submit data to NDEx How to access NDEx data   NIDDK; NLM/NIH
The Universal Protein Resource (UniProt) RRID:SCR_002380 The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data. The UniProt databases are the UniProt Knowledgebase (UniProtKB), the UniProt Reference Clusters (UniRef), and the UniProt Archive (UniParc).   How to submit data to UniProt How to access UniProt data   NIDDK; NLM/NIH
The Zebrafish Information Network (ZFIN) RRID:SCR_002560 ZFIN serves as the zebrafish model organism database. It aims to: a) be the community database resource for the laboratory use of zebrafish, b) develop and support integrated zebrafish genetic, genomic and developmental information, c) maintain the definitive reference data sets of zebrafish research information, d) to link this information extensively to corresponding data in other model organism and human databases, e) facilitate the use of zebrafish as a model for human biology, and f) serve the needs of the research community.   How to submit data to ZFIN How to access ZFIN data   NIDDK; NLM/NIH
WormBase RRID:SCR_003098 WormBase is an international consortium of biologists and computer scientists dedicated to providing the research community with accurate, current, accessible information concerning the genetics, genomics and biology of C. elegans and related nematodes.   How to submit data to WormBase How to access WormBase data   NIDDK; NLM/NIH



Institutional repository

Does your institution have a repository for managing and publishing your data? Usually, these services are provided by the library.
The Directory of Open Access Resources provides a directory of institutional repositories.



Nucleic acid sequence

Respository Name RRID Description Type of Data Submitting Data Accessing Data Guidelines/Standards Recommended by
Database of Genomic Variants Archive (DGVa) RRID:SCR_004896 The Database of Genomic Variants archive (DGVa) is a repository that provides archiving, accessioning and distribution of publicly available genomic structural variants, in all species. Genomic structural variants How to submit data to DGVa How to access DGVa data   NIDDK; Nature Scientific Data; PLOS; Science
dbSNP RRID:SCR_002338 dbSNP is a general public archive of all short sequence variation, not just single nucleotide substitutions that occur frequently enough in a population to be termed polymorphic, but also rare variants, including those with clinical assertions in ClinVar. dbSNP includes a broad collection of simple genetic variations such as single-base nucleotide substitutions, small-scale multi-base deletions or insertions, and microsatellite repeats. Simple genetic polymorphism or structural variations How to submit data to dbSNP How to access dbSNP data   NIDDK; Nature Scientific Data; PLOS
dbVar RRID:SCR_003219 dbVar is a NCBI database of genomic structural variation. Simple genetic polymorphism or structural variations How to submit data to dbVar How to access dbVar data   NIDDK; Nature Scientific Data; PLOS
DNA DataBank of Japan (DDBJ) RRID:SCR_002359 DDBJ Center provides sharing and analysis services for data from life science researches and advances science. Gene sequence How to submit data to DDBJ How to access DDBJ data Minimum Information about any (x) Sequence (MIxS) NIDDK; Nature Scientific Data; PLOS; Science
EBI Metagenomics RRID:SCR_016429 Submit, analyze, discover and compare microbiome data (now called MGnify) metagonomics sequence data and associate metadata How to submit data to MGnify How to access MGnify data Minimum Information about a (Meta)Genome Sequence; Minimum Information about any (x) Sequence NIDDK; Nature Scientific Data; PLOS; Science
European Nucleotide Archive (ENA) A comprehensive record of the world's nucleotide sequencing information, covering raw sequencing data, sequence assembly information and functional annotation. Sequence reads, genome assemblies, targeted assembled and annotated sequences How to submit data to ENA How to access ENA data Minimum Information About Sample Preparation for a Phosphoproteomics Experiment; Minimum Information about any (x) Sequence; Marine Microbial Biodiversity, Bioinformatics and Biotechnology data reporting and service standards NIDDK; Nature Scientific Data; PLOS; Science
European Variation Archive (EVA) The European Variation Archive is an open-access database of all types of genetic variation data from all species. Gene sequence how to submit data to EVA How to access EVA data   NIDDK; Nature Scientific Data; PLOS; Science
GenBank RRID:SCR_002760 GenBank is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences. GenBank is designed to provide and encourage access within the scientific community to the most up to date and comprehensive DNA sequence information. Gene sequence How to submit data to GenBank How to access GenBank data Minimum Information about any (x) Sequence (MIxS) NIDDK; Nature Scientific Data; PLOS; Science
Gene Expression Omnibus (GEO) RRID:SCR_007303 A public functional genomics data repository supporting MIAME-compliant data submissions. Array- and sequence-based data are accepted. Tools are provided to help users query and download experiments and curated gene expression profiles. microarray; next-generation sequencing (NGS) How to submit to GEO How to access GEO data MIAME standard for microarray data. NIDDK; Nature Scientific Data; PLOS; Science
miRBase RRID:SCR_003152 The miRBase database is a searchable database of published miRNA sequences and annotation. miRNA sequences and annotation How to submit to miRBase How to access miRBase data   NIDDK; PLOS
NCBI Assembly RRID:SCR_012917 A database providing information on the structure of assembled genomes, assembly names and other meta-data, statistical reports, and links to genomic sequence data. Genome assemblies (collection of genomic sequences that are used to represent the genome of an organism) How to submit to Assembly How to access Assembly data   NIDDK; Nature Scientific Data
NCBI Sequence Read Archive (SRA) RRID:SCR_004891 The SRA is NIH's primary archive of high-throughput sequencing data and is part of the International Nucleotide Sequence Database Collaboration (INSDC) that includes at the NCBI Sequence Read Archive (SRA), the European Bioinformatics Institute (EBI), and the DNA Database of Japan (DDBJ). Data submitted to any of the three organizations are shared among them. NGS data only; Multiple sequence alignment How to submit data to SRA How to access SRA data Minimum Information about a MARKer gene Sequence; Minimal Information about a high throughput SEQuencing Experiment NIDDK; Nature Scientific Data; PLOS; Science
NCBI Trace Archive RRID:SCR_013788 The Trace Archive serves as the repository of sequencing data from gel/capillary platforms such as Applied Biosystems ABI 3730®. Capillary electrophoresis data How to submit to NCBI Trace Archive How to access NCBI Trace Archive data   Nature Scientific Data; PLOS



Protein sequence

Respository Name RRID Description Type of Data Submitting Data Accessing Data Guidelines/Standards Recommended by
UniProtKB RRID:SCR_004426 The UniProt Knowledgebase (UniProtKB) is the central hub for the collection of functional information on proteins, with accurate, consistent and rich annotation. In addition to capturing the core data mandatory for each UniProtKB entry (mainly, the amino acid sequence, protein name or description, taxonomic data and citation information), as much annotation information as possible is added. This includes widely accepted biological ontologies, classifications and cross-references, and clear indications of the quality of annotation in the form of evidence attribution of experimental and computational data. The UniProt Knowledgebase consists of two sections: a section containing manually-annotated records with information extracted from literature and curator-evaluated computational analysis, and a section with computationally analyzed records that await full manual annotation. For the sake of continuity and name recognition, the two sections are referred to as "UniProtKB/Swiss-Prot" (reviewed, manually annotated) and "UniProtKB/TrEMBL" (unreviewed, automatically annotated), respectively. Amino acid sequence and annotation How to submit to UniProtKB How to access UniProKB data   Nature Scientific Data; Science; PLOS



Molecular and supramolecular structure

Respository Name RRID Description Type of Data Submitting Data Accessing Data Guidelines/Standards Recommended by
Biological Magnetic Resonance Data Bank (BMRB) (BioMag Res Bank) RRID:SCR_002296 A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules Peptides and proteins; NMR spectroscopy data How to submit to BMRB How to access BMRB data   NIDDK; Nature Scientific Data; PLOS; Science
Cambridge Crystallographic Data Centre (CCDC) RRID:SCR_014707 The world's comprehensive and up-to-date database of crystal structures with over 900,000 curated entries. small-molecule crystal structure How to submit to CCDC How to access CCDC data   NIDDK; PLOS; Science
Coherent X-ray Imaging Data Bank (CXIDB) RRID:SCR_014722 Database which offers scientists from all over the world a unique opportunity to access data from Coherent X-ray Imaging (CXI) experiments. Peptides and proteins; Coherent X-ray Imaging (CXI) data How to submit to CXIDB How to access CXIDB data   NIDDK; Nature Scientific Data; PLOS
Crystallography Open Database (COD) RRID:SCR_005874 Open-access collection of crystal structures of organic, inorganic, metal-organics compounds and minerals, excluding biopolymers. Structural data for small molecules; peptides and proteins How to submit to COD How to access COD data   NIDDK; Nature Scientific Data; PLOS
Electron Microscopy Data Bank (MSD-EBI) RRID:SCR_006506 The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography. Peptides and proteins; Electron microscopy density maps   How to access MSD-EBI data   NIDDK; Science
EMDataBank (EMDB) RRID:SCR_003207 A unified global portal for deposition and retrieval of 3DEM density maps, atomic models, and associated metadata, as well as a resource for news, events, software tools, data standards, validation methods for the 3DEM community. Peptides and proteins; larger assemblies; 3-Dimensional Electron Microscopy (3DEM) How to submit to EMBD How to access EMDB data   NIDDK; Nature Scientific Data; PLOS
Inorganic Crystal Structure Database (ICSD) The world's largest database for completely identified inorganic crystal structures, ICSD. Inorganic crystal structure   How to access ICSD data   NIDDK; Science
Macromolecular Structure Database (*becoming the PDBe) RRID:SCR_004312 European resource for the collection, organisation and dissemination of data on biological macromolecular structures Macromolecular structure data How to submit to PDBe How to access PDBe data   NIDDK; Science
Protein Circular Dichroism Data Bank (PCDDB) The protein circular dichroism data bank is a repository for circular dichroism spectral and metadata. Peptides and proteins How to submit to PCDDB How to access PCDDB data   NIDDK; Nature Scientific Data; PLOS
Protein Data Bank Japan RRID:SCR_008912 Maintains a centralized PDB archive of macromolecular structures and provides integrated tools. Macromolecular structure data How to submit to PDB How to access PDB data   NIDDK; Science
Structural Biology Data Grid RRID:SCR_003511 Provides support for the publication of X-ray diffraction, MicroED, LLSM datasets, as well as structural models Peptides and proteins How to submit to SBDG How to access SBDG data   NIDDK; Nature Scientific Data
Worldwide Protein Data Bank (wwPDB) RRID:SCR_006555 A repository of information about the 3D structures of proteins, nucleic acids, and complex assemblies. Peptides and proteins How to submit to wwPDB How to access wwPDB data   NIDDK; Nature Scientific Data; PLOS; Science



Functional Genomics

Respository Name RRID Description Type of Data Submitting Data Accessing Data Guidelines/Standards Recommended by
ArrayExpress RRID:SCR_002964 Archive of Functional Genomics Data stores data from high-throughput functional genomics experiments, and provides these data for reuse to the research community. Microarray; next-generation sequencing (NGS) How to submit to ArrayExpress How to access ArrayExpress Data MIAME standard for microarray data. NIDDK; Nature Scientific Data; PLOS; Science
Biological General Repository for Interaction Datasets (BioGRID) RRID:SCR_007393 BioGRID is a curated biological database of protein-protein interactions, genetic interactions, chemical interactions, and post-translational modifications from major model organism species. All interaction data are freely provided through our search index and available via download in a wide variety of standardized formats. Molecular interaction data How to submit data to BioGRID How to access BioGRID data Molecular interaction data should be deposited with a member of the International Molecular Exchange Consortium (IMEx), following the MIMIx recommendations. NIDDK; Nature Scientific Data; PLOS
database of Genotypes and Phenotypes (dbGaP) RRID:SCR_002709 The database of Genotypes and Phenotypes (dbGaP) was developed to archive and distribute the data and results from studies that have investigated the interaction of genotype and phenotype in Humans. Genotyping and phenotyping information in human subjects How to submit data to dbGaP How to access dbGaP data NIDDK; Nature Scientific Data; PLOS
Database of Interacting Proteins (DIP) RRID:SCR_003167 DIP catalogs experimentally determined interactions between proteins. It combines information from a variety of sources to create a single, consistent set of protein-protein interactions. Protein interaction data How to submit data to DIP How to access DIP data Molecular interaction data should be deposited with a member of the International Molecular Exchange Consortium (IMEx), following the Minimum Information about a Molecular Interaction Experiment(MIMIx) recommendations. NIDDK; Nature Scientific Data; PLOS
Gene Expression Omnibus (GEO) RRID:SCR_007303 Gene Expression Omnibus is a public functional genomics data repository supporting MIAME-compliant submissions of array- and sequence-based data. Tools are provided to help users query and download experiments and curated gene expression profiles. Microarray; next-generation sequencing (NGS) How to submit to GEO How to access GEO data MIAME standard for microarray data. NIDDK; Nature Scientific Data; PLOS; Science
GenomeRNAi RRID:SCR_013088 A database containing phenotypes from RNA interference (RNAi) screens in Drosophila and Homo sapiens. In addition, the database provides an updated resource of RNAi reagents and their predicted quality. RNAi screening data (phenotype and/or reagent) How to access GenomeRNAi database NIDDK; Nature Scientific Data; PLOS
IntAct RRID:SCR_006944 Provides a freely available, open source database system and analysis tools for molecular interaction data. All interactions are derived from literature curation or direct user submissions and are freely available. Molecular interaction data How to submit data to IntAct How to access IntAct data Molecular interaction data should be deposited with a member of the International Molecular Exchange Consortium (IMEx), following the Minimum Information about a Molecular Interaction Experiment (MIMIx) recommendations. NIDDK; Nature Scientific Data; PLOS
Japanese Genotype-phenotype Archive (JGA) RRID:SCR_003118 A service for permanent archiving and sharing of all types of individual-level genetic and de-identified phenotypic data resulting from biomedical research projects. Data linking genotyping and phenotyping information in human subjects; all types of individual-level genetic and de-identified phenotypic data How to submit data to JGA How to access JGA data NIDDK; Nature Scientific Data
NCBI PubChem BioAssay RRID:SCR_010734 Contains small-molecule and RNAi screening data along with associated annotation information from contributing organizations. BioAssay contains a collection of bioactivity and toxicity data that has greatly supported research in fields such as medicinal chemistry, drug discovery, pharmaceutical genomics and informatics research. Small-molecule and RNAi screening data; bioactibity and toxicity data How to submit data to PubChem BioAssay How to access PubChem BioAssay data Minimum Information About a RNAi Experiment NIDDK; Nature Scientific Data
The European Genome-phenome Archive (EGA) RRID:SCR_004944 A service for the permanent archiving and distribution of personally identifiable genetic and phenotypic data resulting from biomedical research projects. Data linking genotyping and phenotyping information in human subjects, including sequence data, array based data, and phenotype data. How to submit data to EGA How to access EGA data The minimum information about any (x) sequence (MIxS) NIDDK; Nature Scientific Data; PLOS; Science



Metabolomics

Respository Name RRID Description Type of Data Submitting Data Accessing Data Guidelines/Standards Recommended by
MetaboLights RRID:SCR_014663 A database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and covers metabolite structures and their reference spectra as well as their biological roles, locations and concentrations, and experimental data from metabolic experiments. Metabolite structure How to submit data to MetaboLights How to access MetaboLights data MSI guidelines NIDDK; Nature Scientific Data; PLOS



Proteomics

Respository Name RRID Description Type of Data Submitting Data Accessing Data Guidelines/Standards Recommended by
Global Proteome Machine Database (GPM DB) RRID:SCR_006617 The GPM is an experimental project to create knowledge from proteomics data and reuse it to solve biomedical research problems. The Global Proteome Machine Database was constructed to utilize the information obtained by GPM servers to aid in the difficult process of validating peptide MS/MS spectra as well as protein coverage patterns. Protein and peptides; Mass spectrometry   How to access data   NIDDK; PLOS
Mass Spectrometry Interactive Virtual Environment (MassIVE) RRID:SCR_013665 MassIVE is a community resource developed by the NIH-funded Center for Computational Mass Spectrometry to promote the global, free exchange of mass spectrometry data. MassIVE datasets can be assigned ProteomeXchange accessions to satisfy publication requirements. Protein and peptides; Mass spectrometry How to submit data How to access data ProteomeXchange identifiers can be requested to meet publication guidelines of proteomics datasets. Nature Scientific Data
PeptideAtlas RRID:SCR_006783 A multi-organism, publicly accessible compendium of peptides identified in a large set of tandem mass spectrometry proteomics experiments. Tandem mass spectrometry proteomics data of peptides How to submit data to PeptideAtlas How to access PeptideAtlas data Submit proteomics data to members of the ProteomeXchange consortium (listed below), following the MIAPE recommendations NIDDK; Nature Scientific Data; PLOS
ProteomeXchange RRID:SCR_004055 Provide globally coordinated standard data submission and dissemination pipelines involving the main proteomics repositories Proteomics How to submit data to ProteomeXchange How to access data in ProteomeXchange MIAPE: Mass Spectrometry; Minimum Information About a Proteomics Experiment; MIAPE: Mass Spectrometry Informatics NIDDK; PLOS
Proteomics Identifications (PRIDE) RRID:SCR_003411 A centralized, standards compliant, public data repository for proteomics data, including protein and peptide identifications, post-translational modifications and supporting spectral evidence. Protein and peptide identification/quantification data from mass spectrometry How to submit data to PRIDE How to access PRIDE data Submit proteomics data to members of the ProteomeXchange consortium (listed below), following the MIAPE recommendations NIDDK; Nature Scientific Data; PLOS
Worldwide Protein Data Bank (wwPDB) RRID:SCR_006555 The single repository of information about the 3D structures of proteins, nucleic acids, and complex assemblies. Peptides and proteins How to submit data to wwPDB How to access wwPDB data   NIDDK; Nature Scientific Data; PLOS; Science



Cytometry and Immunology

Respository Name RRID Description Type of Data Submitting Data Accessing Data Guidelines/Standards Recommended by
FlowRepository RRID:SCR_013779 FlowRepository is a database of flow cytometry experiments where you can query and download data collected and annotated according to the MIFlowCyt standard. It is primarily used as a data deposition place for experimental findings published in peer-reviewed journals in the flow cytometry field. Flow cytometry data How to submit data to FlowRepository How to access FlowRepository data MIFlowCyt standard NIDDK; Nature Scientific Data; PLOS
ImmPort RRID:SCR_012804 The ImmPort system serves as a long-term, sustainable archive of immunology research data generated by investigators mainly funded through the NIAID/DAIT. The core component of the ImmPort system is an extensive data warehouse containing an integration of experimental data and clinical trial data. Immunology research data including experimental data and clinical trial data   How to access ImmPort data Minimum Information About a Microarray Experiment; Minimum Information about Flow Cytometry; Minimum Information About a Bioinformatics investigation; LINCS Pilot Phase 1 Metadata Standards: Antibody Reagents NIDDK; Nature Scientific Data; PLOS



Chemistry and chemical biology, biochemistry

Respository Name RRID Description Type of Data Submitting Data Accessing Data Guidelines/Standards Recommended by
Beilstein-Institut, STRENDA STRENDA DB is a storage and search platform supported by the Beilstein-Institut that incorporates the STRENDA Guidelines in a user-friendly, web-based system. If you are an author who is preparing a manuscript containing functional enzymology data, STRENDA DB provides you the means to ensure that your data sets are complete and valid before you submit them as part of a publication to a journal. Functional enzymology data How to submit data to STRENDA How to access STRENDA data   NIDDK; Nature Scientific Data; PLOS
caNanoLab RRID:SCR_013717   Physico-chemical, in vitro and in vivo assays data that characterize nanomaterials. *This is a curated resource which may not accept direct submission of data. Contact the database directly for further information       Nature Scientific Data; PLOS
ChEMBL* RRID:SCR_014042 ChEMBL is a database of bioactive drug-like small molecules, it contains 2-D structures, calculated properties (e.g. logP, Molecular Weight, Lipinski Parameters, etc.) and abstracted bioactivities (e.g. binding constants, pharmacology and ADMET data). Bioactivity data containing information mannually extracted from the medicinal chemistry literature. *This is a curated resource which may not accept direct submission of data. Contact the database directly for further information   How to access ChEMBL data   NIDDK; Nature Scientific Data
Kinetic Models of Biological Systems (KiMoSys) A web application for quantitative KInetic MOdels of biological SYStems. Kinetic models How to submit data to KiMoSys How to access KiMoSys data   NIDDK; PLOS
Mass spectrometry Interactive Virtual Environment (MassIVE) RRID:SCR_013665 MassIVE is a community resource developed by the NIH-funded Center for Computational Mass Spectrometry to promote the global, free exchange of mass spectrometry data. MassIVE datasets can be assigned ProteomeXchange accessions to satisfy publication requirements. Mass spectrometry data How to submit data to MassIVE How to access MassIVE data   NIDDK; PLOS
NCBI PubChem Substance RRID:SCR_004742 The PubChem Substance Database contains descriptions of samples, from a variety of sources, and links to biological screening results that are available in PubChem BioAssay. If the chemical contents of a sample are known, the description includes links to PubChem Compound. Community-provided information about chemical entities How to submit data to PubChem Substance How to access PubChem Substance data   NIDDK; Nature Scientific Data; PLOS



Imaging

Respository Name RRID Description Type of Data Submitting Data Accessing Data Guidelines/Standards Recommended by
Cell Image Library RRID:SCR_003510 Images of all cell types from all organisms, including intracellular structures and movies or animations demonstrating functions. Microscopic imaging data How to submit data to Cell Image Library How to access data in Cell Image Library   NIDDK
Coherent X-ray Imaging Data Bank (CXIDB) RRID:SCR_014722 A database which offers scientists from all over the world a unique opportunity to access data from Coherent X-ray Imaging (CXI) experiments. Peptides and proteins; Coherent X-ray Imaging (CXI) data How to submit data to CXIDB How to access CXIDB data   NIDDK; Nature Scientific Data; PLOS
Image Data Resource This online, public data repository seeks to store, integrate and serve image datasets from published scientific studies. Reference image datasets supporting an original scientific publication How to submit data to IDR How to access IDR data   NIDDK; Nature Scientific Data
SICAS Medical Image Repository SICAS offers a unique combination of competence in acquiring and storing medical images, in processing and visualising data for research and applications in medicine. Brain images, Segmentations, SSM, Dicom, ITK based images and statistical models   How to access SMIR data   NIDDK; Nature Scientific Data; PLOS
The Cancer Imaging Archive (TCIA) RRID:SCR_008927 TCIA is a service which de-identifies and hosts a large archive of medical images of cancer accessible for public download. The data are organized as “Collections”, typically patients related by a common disease (e.g. lung cancer), image modality (MRI, CT, etc) or research focus. DICOM is the primary file format used by TCIA for image storage. Supporting data related to the images such as patient outcomes, treatment details, genomics, pathology, and expert analyses are also provided when available. Primary DICOM image datasets from cancer patients and analysis datasets How to submit data to TCIA How to access TCIA data   NIDDK; Nature Scientific Data; PLOS



Neuroscience

Respository Name RRID Description Type of Data Submitting Data Accessing Data Guidelines/Standards Recommended by
Functional Connectomes Project International Neuroimaging Data-Sharing Initiative (FCP/INDI) RRID:SCR_015771 Over 1200 resting state fMRI (R-fMRI) datasets collected from 33 sites around the world Resting-state functional Magnetic Resonance Imaging (fMRI) and DTI images   How to access FCP/INDI data   NIDDK; Nature Scientific Data; PLOS
G-Node RRID:SCR_007279 A free data management system designed for comprehensive and reproducible management of scientific data Neuroscience research data How to submit data to G-Node How to access G-Node data   NIDDK; Nature Scientific Data; PLOS
NeuroMorpho.org RRID:SCR_002145 A centrally curated inventory of digitally reconstructed neurons associated with peer-reviewed publications. 3D neuronal reconstructions and associated metadata   How to access NeuroMorpho data   NIDDK; Nature Scientific Data; PLOS
OpenNeuro (formerly OpenfMRI) RRID:SCR_005031   Neuroimaging data; Magnetic Resonance Imaging (MRI) How to submit data to OpenNeuro How to access OpenNeuro data   NIDDK; Nature Scientific Data; PLOS



All research data types

Respository Name RRID Description Type of Data Submitting Data Accessing Data Guidelines/Standards Recommended by
Dryad Digital Repository RRID:SCR_005910 A curated resource that makes the data underlying scientific publications discoverable, freely reusable, and citable. Dryad provides a general-purpose home for a wide diversity of datatypes. Data underlying scientific publications How to submit data to Dryad How to access Dryad data Common Metadata Elements for Cataloging Biomedical Datasets NIDDK; Nature Scientific Data; PLOS; Science
Figshare RRID:SCR_004328 Store, share and manage all types of research outputs All research data How to submit data to Figshare How to access Figshare data   NIDDK; Nature Scientific Data; PLOS
Harvard Dataverse RRID:SCR_001997 Share, archive, find and cite data across all research fields All research data How to submit data to Dataverse How to access Dataverse data   NIDDK; Nature Scientific Data; PLOS
Mendeley Data RRID:SCR_015671 Store, share, publish and find all types of research data All research data How to submit data to Mendeley How to access Mendeley data    
Open Science Framework A scholarly commons to connect the entire research cycle Research data in all domain areas How to submit to OSF How to access OSF   NIDDK; Nature Scientific Data; PLOS
Zenodo RRID:SCR_004129 Multidisciplinary research results including text, spreadsheet, audio, video, images and source code Multidisciplinary research results inculding text, spreadsheet, zudio, video, images, source code How to submit to Zenodo How to access Zenodo data   NIDDK; Nature Scientific Data; PLOS



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