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The Mouse Metabolic Phenotyping Centers (MMPC) is a National Institutes of Diabetes and Digestive and Kidney Diseases-Sponsored resource that provides state-of-the-art technologies to investigators for a fee. Their services include characterization of mouse metabolism, blood composition (including hormones), energy balance, eating and exercise, organ function and morphology, physiology and histology. MMPC provides data search tools that assist researchers in finding a gene list in association with phenotypes, phenotypes in association with gene-specific KO mice, or finding mouse experimental test results in association with genes, phenotypes, or MMPC test catalog.
dkNET Webinar: The Mouse Metabolic Phenotyping Centers: Services and Data
Dr. Richard McIndoe reviewed the structure of the MMPC, the services it provides and the data generated by the consortium for public use.
What hypothesis are you developing or what information are you looking for? Evidence for physiological processes in which my gene of interest is involved |
The hypothesis generation examples that you selected: Mouse phenotypic evidence for physiological processes regulated by Agap2 |
Identify mammalian phenotypes that are associated with specific gene manipulations in mouse models
STEP 1: First let’s open a new window with the MMPC (National Mouse Metabolic Phenotyping Center)
To make it easier to walk through the tutorial, please launch a new window
STEP 2: Go to Search Data and then select MMPC Data from the drop-down list
STEP 3: The first thing one needs to do within the MMPC Data Search is to let MMPC Data Search tool know "What would you like to search for" from the drop-down list. In this tutorial we will be selecting Gene.
STEP 4: Next, you will need to select a Gene based on your interest from the drop-down list. For this tutorial, please select Agap2. Click Search
STEP 5: This is the example results page that you will see if you pick up the mouse gene Agap2. The results will be changed if you change it to another gene.
Now you can find a list of mammalian phenotypes (see MP terms in the table) that are associated with Agap2.
Hover the mouse cursor over the links to get more information, including
Experimental name
Mouse strains used in the experiment
Assay measurements captured in the experiment
Significance (P value) for this assay between the Control and Experimental groups
Effect size for that assay in the experiments