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VISTA Enhancer Browser

Resource for experimentally validated human and mouse noncoding fragments with gene enhancer activity as assessed in transgenic mice. Most of these noncoding elements were selected for testing based on their extreme conservation in other vertebrates or epigenomic evidence (ChIP-Seq) of putative enhancer marks. Central public database of experimentally validated human and mouse noncoding fragments with gene enhancer activity as assessed in transgenic mice. Users can retrieve elements near single genes of interest, search for enhancers that target reporter gene expression to particular tissue, or download entire collections of enhancers with defined tissue specificity or conservation depth.


Details

  • Resource Type: Resource, service resource, data or information resource, data repository, storage service resource, database
  • Keywords: human, noncoding fragment, mutant mouse strain, molecular neuroanatomy resource, image, telencephalon, development, genome, enhancer, dna fragment, embryo, embryonic mouse, brain, neural tube, eye, ear, heart, tail, limb, nose, cranial nerve, trigeminal, dorsal root ganglia, face, branchial arch, gene expression, annotation, vector, transgenic embryo, lacz reporter vector, lacz, biomaterial supply resource, in vivo, image collection, transcriptional enhancer, chip-seq, bio.tools
  • Resource ID: SCR_007973
  • Proper Citation: (VISTA Enhancer Browser, RRID:SCR_007973)
  • Parent Organization: Lawrence Berkeley National Laboratory
  • Related Condition:
  • Funding Agency: American Heart Association, DOE, NHGRI, NHLBI, NIDCR, NINDS
  • Relation: related to: NIF Data Federation, Monarch Initiative, One Mind Biospecimen Bank Listing, OMICtools, listed by: Debian, bio.tools
  • Reference: PMID:17130149
  • Website Status: Last checked up
  • Alternate IDs: nif-0000-03637, OMICS_01568, biotools:vista_enhancer_browser
  • Alternate URLs: https://bio.tools/vista_enhancer_browser
  • Old URLs:
  • v_uuid: 2c04fdec-0f38-5ed9-8b9c-fb26a7ab6110
License URL:
License Information: