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AddGene: Plasmids

Used in

NIDDK Information Network

Addgene is a repository of published plasmids for use in research.

The Antibody Registry is the authoritative source for antibody identifiers, which can be used in publications to uniquely mark the antibodies used in a paper.

BCBC: Adenovirus

Used in

NIDDK Information Network

The BCBC Adenovirus Collection is a repository of replication-deficient recombinant adenoviruses. As of August 1, 2015, BCBC is no longer in service.

BCBC: Antibodies

Used in

NIDDK Information Network

The Beta Cell Biology Consortium provides a list of antibodies useful to the study of pancreatic islet development and function. As of August 1, 2015, BCBC is no longer in service.

BCBC: Cell Line

Used in

NIDDK Information Network

The BCBC Cell Line Collection is a repository of mouse embryonic stem cell lines for the study of diabetes. As of August 1, 2015, BCBC is no longer in service.

BCBC: Mouse

Used in

NIDDK Information Network

The BCBC Mouse Collection provides for the collection and sharing of annotated information on genetically modified mouse strains that are useful for beta cell and/or pancreatic development research. As of August 1, 2015, BCBC is no longer in service.

BCBC: Protocols

Used in

NIDDK Information Network

BCBC Protocols are related to primary cell culture, immunostaining, ESC differentiation, cell sorting, and RNA purification. As of August 1, 2015, BCBC is no longer in service.

ClinicalTrials.gov: Trial List

Used in

NIDDK Information Network

ClinicalTrials.gov is a registry of clinical studies conducted primarily within the United States.

Diabetic Complications Consortium: Animals

Used in

NIDDK Information Network

Diabetic Complications Consortium provides data and information relevant to diabetes.

Diabetic Complications Consortium: Histology

Used in

NIDDK Information Network

Diabetic Complications Consortium contains sets of histology images.

Diabetic Complications Consortium: Protocols

Used in

NIDDK Information Network

Diabetic Complications Consortium provides provides a list of protocols used by DiaComp.

GUDMAP: Expression

Used in

NIDDK Information Network

GUDMAP, GenitoUrinary Molecular Anatomy Project, aggregates and provides experimental gene expression data from the genito-urinary system. 

GUDMAP: Image

Used in

NIDDK Information Network

GUDMAP, GenitoUrinary Development Molecular Anatomy Project, aggregates and provides images of experimental gene expression data from the mouse genitourinary system. The image links to the image set, where individual images can be downloaded.

GUDMAP: Protocols

Used in

NIDDK Information Network

GUDMAP Protocols provides experimental protocols and standard specifications by a variety of groups from the GenitoUrinary Development Molecular Anatomy Project (GUDMAP). 

Grants.gov: Opportunity

Used in

NIDDK Information Network

Grants.gov provides information on over 1,000 grant programs open for application.

HIRN: Antibodies

Used in

NIDDK Information Network

The Human Islet Research Network (HIRN) helps to organize and support collaborative research related to the loss of functional beta cell mass in Type 1 Diabetes. The antibodies view is a list of antibodies used by HIRN researchers. The "Antibody Name" column links to the HIRN individual antibody pages, and the "Research Resource Identifier" column links to Antibody Registry portal, where more updated information may be found.

HIRN: Mice

Used in

NIDDK Information Network

The Human Islet Research Network (HIRN) helps to organize and support collaborative research related to the loss of functional beta cell mass in Type 1 Diabetes. The mice view is a list of mice used by HIRN researchers. The "Name" column links to the HIRN individual mouse pages, and the "Research Resource Identifier" column links to SciCrunch resource page, where more information can be found.

ISCC: Antibodies

Used in

NIDDK Information Network

The ISCC Antibody Collection is a repository of antibodies relevant to intestinal epithelial stem cell biology.

ISCC: Protocol

Used in

NIDDK Information Network

The ISCC Protocol Library contains protocols relevant to intestinal stem cell biology.

Integrated Animals is a virtual database currently indexing available animal strains and mutants from: AGSC (Ambystoma), BCBC (mice), BDSC (flies), CWRU Cystic Fibrosis Mouse Models (mice), DGGR (flies), FlyBase (flies), IMSR (mice), MGI (mice), MMRRC (mice), NSRRC (pig), NXR (Xenopus), RGD (rats), Sperm Stem Cell Libraries for Biological Research (rats), Tetrahymena Stock Center (Tetrahymena), WormBase (worms), XGSC (Xiphophorus), ZFIN (zebrafish), and ZIRC (zebrafish). Note, the IMSR data is linked, but users may need to re-execute the search if the top mouse is not returned properly.
Note: BCBC is no longer in service, so the links may not be functional.

LIPID MAPS Proteome Database: Gene

Used in

NIDDK Information Network

The LIPID MAPS Proteome Database (LMPD) provides information on gene and proteins associated with lipids.

LIPID MAPS Structure Database: Compounds

Used in

NIDDK Information Network

The LIPID MAPS Structure Database (LMSD) provides structural data and annotations of biologically relevant lipids.

MMPC: Protocols

Used in

NIDDK Information Network

National Mouse Metabolic Phenotyping Centers provides the protocols used by MMPC for mouse models of diabetes.

MMPC: Resources

Used in

NIDDK Information Network

National Mouse Metabolic Phenotyping Centers provide information and data about mouse models of diabetes.

NIDDK Central Repository: Data

Used in

NIDDK Information Network

An archive of clinical data and documentation from NIDDK-sponsored studies.

NURSA: Animal Models

Used in

NIDDK Information Network

NURSA Animal Models has a list of animals models from NURSA.

NURSA: Antibodies

Used in

NIDDK Information Network

NURSA Antibody a list of the antibodies used in generating NURSA datasets.

NURSA: Cell Lines

Used in

NIDDK Information Network

Nuclear Receptor Signaling Atlas provides access to data related to nuclear receptors and nuclear receptor coregulators.

NURSA: Datasets

Used in

NIDDK Information Network

NURSA Datasets contains data related to nuclear receptors and nuclear receptor coregulators.

NURSA: Molecules

Used in

NIDDK Information Network

Curated information on nuclear receptors, ligands and co-regulators from the Nuclear Receptor Signaling Atlas (NURSA). Additional information available through NURSA.

NURSA: PCR Primer

Used in

NIDDK Information Network

NURSA PCR Primers contain primer sequences to amplify nuclear receptors.

Omics Discovery Index: Datasets

Used in

NIDDK Information Network

The Omics Discovery Index (OmicsDI) is a portal that facilitates discovery and access of omics datasets by aggregating metadata across a group of transcriptomics, genomics, proteomics and metabolomics resources.

RePORTER: CurrentNIHGrants

Used in

NIDDK Information Network

NIH RePORTER provides a list of funded grants across NIH institutes.

SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, materials, and more - visit SciCrunch to register your resource.

T1DBase: Human GRCh37 Variants

Used in

NIDDK Information Network

T1DBase provides information on human type 1 diabetes loci based on genome build GRCh37. Note: In October 2016, T1DBase merged with ImmunoBase.

T1DBase: Human GRCh38 Variants

Used in

NIDDK Information Network

T1DBase provides information on human type 1 diabetes loci based on genome build GRCh38. Note: In October 2016, T1DBase merged with ImmunoBase.

T1DBase: Human NCBI 36 Variants

Used in

NIDDK Information Network

T1DBase provides information on human type 1 diabetes loci based on genome build NCBI 36. Note: In October 2016, T1DBase merged with ImmunoBase.

dkNET Pilot Funding News: List

Used in

NIDDK Information Network

NIDDK Information Network (dkNET) curated a list of community-based funding opportunities provided by projects or organizations other than government granting agencies (such as NIH or NSF), e.g., pilot projects, training opportunities.

  • 22 records

1000 Functional Connectomes Project is a fully open downloadable database of 1200 resting state fMRI datasets collected from 33 sites around the world.

  • 2,546 records

Allen Brain Atlas: Connectivity Study provides high-resolution maps of neural connectivity in the mouse brain.

  • 330,762 records

The Allen Mouse Brain Atlas provides a genome-wide database of gene expression in the mouse brain.

  • 981 records

The cell type view provides a database of neuronal cell types based on multimodal characterization of single cells to enable data-driven approaches to classification. For more details about the experiments, please refer to the technical white paper.

  • 295 records

The cell type view provides a database of neuronal cell types based on multimodal characterization of single cells to enable data-driven approaches to classification. For more details about the experiments, please refer to the technical white paper.

  • 332 records

The Avian Brain Circuitry Database (ABCD) provides anatomical and connectivity data of the avian brain. ABCD is no longer in service.

AddGene: Plasmids

Used in

NIDDK Information Network
  • 56,508 records

Addgene is a repository of published plasmids for use in research.

  • 381 records

The Aging Genes and Interventions Database provides data from conclusive investigations connecting genes with aging-related phenotypes.

  • 155 records

The Aging Genes and Interventions Database provides data from conclusive investigations connecting interventions with aging-related phenotypes.

  • 4,212 records

The Animal Aging and Longevity Database includes extensive longevity records and complementary traits for > 4000 vertebrate species. Data quality can be judged by looking at the sample size column and the original references, the last two columns.

  • 125,753 records

Animal Quantitative Trait Loci Database collects and provides publicly available trait mapping data, i.e. QTL (phenotype/expression, eQTL), candidate gene and association data (GWAS), and copy number variations (CNV) mapped to livestock animal genomes to facilitate locating and comparing discoveries within and between species. Additional information regarding QTL data can be found at the Animal QTL Database FAQ.

  • 2,468,713 records

The Antibody Registry is the authoritative source for antibody identifiers, which can be used in publications to uniquely mark the antibodies used in a paper.

  • 70,038 records

ArrayExpress is a database of functional genomics experiments including gene expression where you can query and download data collected to MIAME and MINSEQE standards.

  • 9,007 records

BAMS provides information on brain regions, their categorization and proper nomenclature. 

  • 479 records

BAMS provides information on cells, their categorization and proper nomenclature. 

  • 1,014 records

BAMS provides information on brain regions, their relationship to other brain regions and proper nomenclature. 

  • 12 records

BARD is a database that allows scientists without specialized training to effectively utilize Molecular Libraries Program (MLP) data. 

  • 22,458 records

The Barres Brain RNA-Seq is a database containing RNA-Seq transcriptome and splicing data from glia, neurons, and vascular cells of the mouse cerebral cortex. Data below are gene expression levels by cell type reported as fragments per kilobase of transcript per million mapped reads (FPKM). The original spreadsheet can be found here.

  • 13,683 records

Barres Brain RNA-Seq is a database containing RNA-Seq transcriptome and splicing data from glia, neurons, and vascular cells of the mouse cerebral cortex. Start and end locations below are coordinates in the mouse genome.

BCBC: Adenovirus

Used in

NIDDK Information Network
  • 137 records

The BCBC Adenovirus Collection is a repository of replication-deficient recombinant adenoviruses. As of August 1, 2015, BCBC is no longer in service.

BCBC: Antibodies

Used in

NIDDK Information Network
  • 175 records

The Beta Cell Biology Consortium provides a list of antibodies useful to the study of pancreatic islet development and function. As of August 1, 2015, BCBC is no longer in service.

BCBC: Cell Line

Used in

NIDDK Information Network
  • 68 records

The BCBC Cell Line Collection is a repository of mouse embryonic stem cell lines for the study of diabetes. As of August 1, 2015, BCBC is no longer in service.

BCBC: Mouse

Used in

NIDDK Information Network
  • 120 records

The BCBC Mouse Collection provides for the collection and sharing of annotated information on genetically modified mouse strains that are useful for beta cell and/or pancreatic development research. As of August 1, 2015, BCBC is no longer in service.

BCBC: Protocols

Used in

NIDDK Information Network
  • 55 records

BCBC Protocols are related to primary cell culture, immunostaining, ESC differentiation, cell sorting, and RNA purification. As of August 1, 2015, BCBC is no longer in service.

  • 129 records

The SMA Biomarkers Portal contains data from the BforSMA clinical study (ClinicalTrials.gov, NCT00756821), a pilot study to identify candidate biomarkers for Spinal Muscular Atrophy (SMA). The Clinical Data view reports disease progression, scores from a battery standard SMA clinical tests, and gross motor function as measured by the Modified Hammersmith Functional Motor Scale (MHFMS) for each individual enrolled in the study. For more information, see this document.

  • 128 records

The SMA Biomarkers Portal contains data from the BforSMA clinical study (ClinicalTrials.gov, NCT00756821), a pilot study to identify candidate biomarkers for Spinal Muscular Atrophy (SMA). The Medications for Each Subject view reports whether individuals enrolled in the study were using specific classes of medicine. For more information, see this document.

  • 68 records

The SMA Biomarkers Portal contains data from the BforSMA clinical study (ClinicalTrials.gov, NCT00756821), a pilot study to identify candidate biomarkers for Spinal Muscular Atrophy (SMA). The Medications non-prescription view lists the non-prescription medications individuals enrolled in the study were using. For more information, see this document.

  • 100 records

The SMA Biomarkers Portal contains data from the BforSMA clinical study (ClinicalTrials.gov, NCT00756821), a pilot study to identify candidate biomarkers for Spinal Muscular Atrophy (SMA). The Medications other prescription view lists the prescription medications individuals enrolled in the study were using. For more information, see this document.

  • 129 records

The SMA Biomarkers Portal contains data from the BforSMA clinical study (ClinicalTrials.gov, NCT00756821), a pilot study to identify candidate biomarkers for Spinal Muscular Atrophy (SMA). The Metabolomics Plasma Amino Acid view reports concentrations of amino acids (in μM) in plasma samples from individuals enrolled in the study. For more information, see this document.

  • 129 records

The SMA Biomarkers Portal contains data from the BforSMA clinical study (ClinicalTrials.gov, NCT00756821), a pilot study to identify candidate biomarkers for Spinal Muscular Atrophy (SMA). The Metabolomics Plasma Free Fatty Acid (FFA) view reports concentrations of unesterified FFAs (in μM) in plasma samples from individuals enrolled in the study. For more information, see this document.

  • 128 records

The SMA Biomarkers Portal contains data from the BforSMA clinical study (ClinicalTrials.gov, NCT00756821), a pilot study to identify candidate biomarkers for Spinal Muscular Atrophy (SMA). The Metabolomics Plasma Gas Chromatography-Mass Spectrometry view reports the GC-MS peak ratios of analytes found in plasma samples from individuals enrolled in the study. For more information, see this document.

  • 129 records

The SMA Biomarkers Portal contains data from the BforSMA clinical study (ClinicalTrials.gov, NCT00756821), a pilot study to identify candidate biomarkers for Spinal Muscular Atrophy (SMA). The Metabolomics Plasma Lipid Chromatography-Mass Spectrometry view reports the LC-MS peak ratios of analytes found in plasma samples from individuals enrolled in the study. For more information, see this document.

  • 124 records

The SMA Biomarkers Portal contains data from the BforSMA clinical study (ClinicalTrials.gov, NCT00756821), a pilot study to identify candidate biomarkers for Spinal Muscular Atrophy (SMA). The Metabolomics Urine Gas Chromatography-Mass Spectrometry view reports the GC-MS peak ratios of analytes found in urine samples from individuals enrolled in the study. For more information, see this document.

  • 89 records

The SMA Biomarkers Portal contains data from the BforSMA clinical study (ClinicalTrials.gov, NCT00756821), a pilot study to identify candidate biomarkers for Spinal Muscular Atrophy (SMA). The Nutritional Supplements and Vitamins view lists vitamins and supplements individuals enrolled in the study were using. For more information, see this document.

  • 58,281 records

The SMA Biomarkers Portal contains data from the BforSMA clinical study (ClinicalTrials.gov, NCT00756821), a pilot study to identify candidate biomarkers for Spinal Muscular Atrophy (SMA). The Plasma Proteomics view reports the proteins, and their mass to charge ratio (m/z), found in plasma samples from individuals enrolled in the study. For more information, see this document.

  • 129 records

The SMA Biomarkers Portal contains data from the BforSMA clinical study (ClinicalTrials.gov, NCT00756821), a pilot study to identify candidate biomarkers for Spinal Muscular Atrophy (SMA). The SMN Copy Number Analysis view reports SMN1 (survival motor neuron 1) and SMN2 copy number results from DNA analysis. For more information, see this document.

  • 129 records

The SMA Biomarkers Portal contains data from the BforSMA clinical study (ClinicalTrials.gov, NCT00756821), a pilot study to identify candidate biomarkers for Spinal Muscular Atrophy (SMA). The SMN Protein Data view reports survival motor neuron (SMN) protein levels measured in peripheral blood mononuclear cells (PBMCs). For more information, see this document.

  • 129 records

The SMA Biomarkers Portal contains data from the BforSMA clinical study (ClinicalTrials.gov, NCT00756821), a pilot study to identify candidate biomarkers for Spinal Muscular Atrophy (SMA). The SMN Trascipts view reports transcripts levels associated with survival of motor neuron (SMN) protein: (1) SMN2-Full Length (SMN2-FL), (2) SMN1-Full Length (SMN1-FL), (3) SMN transcript lacking exon 7 (SMN-?7), and (4) GAPDH, a housekeeping gene commonly used for normalization in SMN transcript analysis. For more information, see this document.

  • 27,535,765 records

BioGrid is an interaction repository of protein and genetic interactions from model organisms and humans, including complete coverage of literature for budding yeast (S. cerevisiae), fission yeast (S. pombe) and thale cress (A. thaliana). This identifiers view maintains a map of gene and protein identifiers to several other repositories including NCBI, Ensembl, and more than 30 specialized biological databases.

  • 1,443,934 records

BioGrid is an interaction repository of protein and genetic interactions. This interactions view curates and supplies protein and genetic interactions for coding and non-coding genes in Human, Mouse, Rat, Fly, Worm, Frog, Yeast, Arabadopsis and many additional model organisms.

  • 16,277,672 records

BioNOT is a database of negated sentences mined across biomedical articles. 

  • 13,592 records

BioNumbers is a database that extracts biologically relevant numbers from published papers.

  • 918 records

BioSharing provides a community curated list of biological databases.

  • 381 records

Biospecimen Research Database is a database of Standard Operating Procedures (SOP) related to biospecimens. SOPs are organized in a hierarchy consisting of two tiers: (1) SOPs, established protocols; and (2) Biospecimen Evidence-based Practices (BEBP), procedural guidelines developed using literature evidence.

  • 4,391 records

Brain Machine Interface Platform (BMI PF) provides interdisciplinary information on brain machine interfaces.

  • 20,275 records

BrainInfo provides atlas information of the brain, including brain structures, nomenclature and relationships across seven languages.

  • 1,137 records

BrainMaps.org is a high-resolution brain atlas of primate and non-primate brains.

  • 122 records

BrainMaps.org provides high-resolution brain datasets of primate and non-primate brains.

  • 8,673,960 records

BrainSpan: Atlas of the Developing Human Brain - Gene data set contains lifespan gene expression levels for exons measured by microarray profiling, averaged to genes.

  • 113,595,912 records

BrainSpan: Atlas of the Developing Human Brain is designed as a foundational resource for studying transcriptional mechanisms involved in human brain development. The Exon microarray summarized to probe sets dataset contains normalized RNA-Seq expression values for analysis.

  • 132,135,906 records

BrainSpan: Atlas of the Developing Human Brain - Exons data set contains RNA-Seq RPKM (reads per kilobase per million), values averaged to exons.

  • 12,927,333 records

BrainSpan: Atlas of the Developing Human Brain - Gene View contains RNA-Seq RPKM (reads per kilobase per million), values averaged to genes, over human brain development.

  • 3,912 records

Brede Database provides functional activation foci data (Talairach coordinates) from published neuroimaging articles.

  • 471 records

The Cell Centered Database (CCDB) is a web accessible database for high resolution 2D, 3D and 4D data from light and electron microscopy, including correlated imaging.

  • 203 records

The Cell Centered Database (CCDB) is a web-accessible database for high resolution 2D, 3D and 4D data from light and electron microscopy, including correlated imaging. In this view, information about subcellular protein location is available.

  • 10,226 records

The Cell: An Image Library provides annotated images, videos and animations of cellular processes.

  • 635 records

CellML Model Repository is a free, open-source, extensible markup language based standard for defining mathematical models of cellular function.

  • 666 records

CEPALSTAT is the gateway to the statistical information collected by the Economic Commission for Latin America and the Caribbean (ECLAC or CEPAL in Spanish). The indicators view lists regional and national statistics based on social, demographic, economic and environmental indicators.

  • 1,276 records

The Cerebellar Platform is an interdisciplinary repository containing information on cerebellur anatomy and physiology.

  • 601,437 records

ChEBI, Chemical Entities of Biological Interest provides data on natural or synthetic chemical compounds interact with biological processes.

  • 3,481 records

The Clinical Genomic Database is a manually curated database of conditions with known genetic causes, focusing on medically significant genetic data with available interventions. The GeneticCondition view provides information on conditions with known single gene alterations.

ClinicalTrials.gov: Trial List

Used in

NIDDK Information Network
  • 248,460 records

ClinicalTrials.gov is a registry of clinical studies conducted primarily within the United States.

  • 6,486 records

The ClinVar aggregates information about sequence variation and its relationship to human health. The ClinVar:GeneDisease shows the curated relationships between a gene and a ClinVar disease.

  • 8,037 records

The ClinVar aggregates information about sequence variation and its relationship to human health. The ClinVar:Trait view provides a mapping of ClinVar traits, MedGen terms and other identifiers.

  • 671,662 records

The ClinVar aggregates information about sequence variation and its relationship to human health. The ClinVar:VariantPhenotypes view provides information on sequence alterations present in genes and the resulting phenotypes. For records listing more than one variation, data is presented with the assumption that the individual sequence alterations are in cis.

  • 48,713 records

Coriell Cell Repositories provides cell cultures and DNA from the NIGMS and the NINDS research repositories available to the research community.

  • 48,713 records

The Coriell Cell Repositories provides cell cultures and DNA from NIGMS and the NINDS research repositories available to the research community.

  • 12,988 records

The Coriell Cell Repositories provides cell cultures and DNA from the NIGMS research repositories available to the research community.

  • 35,725 records

The Coriell Cell Repositories provides cell cultures and DNA from the NINDS research repositories available to the research community.

  • 19 records

Collaborative Research in Computational Neuroscience hosts experimental data sets that may be used to test computational models of the brain.

  • 32 records

The Community Structure-Activity Resource (CSAR) provides experimental datasets of crystal structures and binding affinities for diverse protein-ligand complexes. Some datasets are generated in house while are collected from the literature or deposited by academic labs, national centers, and the pharmaceutical industry. The aim is to provide the highest quality data for a diverse collection of proteins and small molecule ligands.

  • 4,855,922 records

Comparative Toxicogenomics Database (CTD) provides information on effects of environmental chemicals on human health. The ChemDisease view is a set of curated and inferred chemical–disease associations.

  • 1,460,053 records

Comparative Toxicogenomics Database (CTD) provides information on the effects of environmental chemicals on human health. The ChemGene view is a set of curated chemical–gene and –protein interactions in vertebrates and invertebrates.

  • 49,867,756 records

Comparative Toxicogenomics Database (CTD) provides information on effects of environmental chemicals on human health. The DiseaseGeneAssociation view is a set of curated disease-gene associations (curated and inferred via chemical interactions) in vertebrates and invertebrates.

  • 3,579 records

Comparative Toxicogenomics Database (CTD) provides information on effects of environmental chemicals on human health. The Diseasepathway view is a set of associations between pathways and diseases.

Diabetic Complications Consortium: Animals

Used in

NIDDK Information Network
  • 139 records

Diabetic Complications Consortium provides data and information relevant to diabetes.

Diabetic Complications Consortium: Histology

Used in

NIDDK Information Network
  • 244 records

Diabetic Complications Consortium contains sets of histology images.

Diabetic Complications Consortium: Protocols

Used in

NIDDK Information Network
  • 74 records

Diabetic Complications Consortium provides provides a list of protocols used by DiaComp.

dkNET Pilot Funding News: List

Used in

NIDDK Information Network
  • 74 records

NIDDK Information Network (dkNET) curated a list of community-based funding opportunities provided by projects or organizations other than government granting agencies (such as NIH or NSF), e.g., pilot projects, training opportunities.

  • 111 records

This dataset was originally published by the Community Structure-Activity Resource (CSAR), which provides experimental datasets of crystal structures and binding affinities for diverse protein-ligand complexes.

  • 111 records

This dataset was originally published by the Community Structure-Activity Resource (CSAR), which provides experimental datasets of crystal structures and binding affinities for diverse protein-ligand complexes.

  • 140 records

This dataset was originally published by the Community Structure-Activity Resource (CSAR), which provides experimental datasets of crystal structures and binding affinities for diverse protein-ligand complexes.

  • 10 records

This dataset was originally published by the Community Structure-Activity Resource (CSAR), which provides experimental datasets of crystal structures and binding affinities for diverse protein-ligand complexes.

  • 298 records

This dataset was originally published by the Community Structure-Activity Resource (CSAR), which provides experimental datasets of crystal structures and binding affinities for diverse protein-ligand complexes.

  • 45 records

This dataset was originally published by the Community Structure-Activity Resource (CSAR), which provides experimental datasets of crystal structures and binding affinities for diverse protein-ligand complexes.

  • 69 records

This dataset was originally published by the Community Structure-Activity Resource (CSAR), which provides experimental datasets of crystal structures and binding affinities for diverse protein-ligand complexes.

  • 19 records

This dataset was originally published by the Community Structure-Activity Resource (CSAR), which provides experimental datasets of crystal structures and binding affinities for diverse protein-ligand complexes.

  • 180 records

This dataset was originally published by the Community Structure-Activity Resource (CSAR), which provides experimental datasets of crystal structures and binding affinities for diverse protein-ligand complexes.

  • 32 records

This dataset was originally published by the Community Structure-Activity Resource (CSAR), which provides experimental datasets of crystal structures and binding affinities for diverse protein-ligand complexes.

  • 32 records

This dataset was originally published by the Community Structure-Activity Resource (CSAR), which provides experimental datasets of crystal structures and binding affinities for diverse protein-ligand complexes.

  • 276 records

This dataset was originally published by the Community Structure-Activity Resource (CSAR), which provides experimental datasets of crystal structures and binding affinities for diverse protein-ligand complexes.

  • 31 records

This dataset was originally published by the Community Structure-Activity Resource (CSAR), which provides experimental datasets of crystal structures and binding affinities for diverse protein-ligand complexes.

  • 46 records

This dataset was originally published by the Community Structure-Activity Resource (CSAR), which provides experimental datasets of crystal structures and binding affinities for diverse protein-ligand complexes.

  • 65,534 records

The DRG provides differential gene expression data relevant to addiction where data types include the effects of a drug, strain, or knockout on a particular gene, in a particular brain region. Share your data set

  • 8,283 records

The DrugBank database combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. The Drugs view consists of a summary of the drug entries.

  • 4,277 records

The DrugBank database combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. The Proteins view contains an overview of the proteins associated with the drug entries.

  • 681 records

Educational Resources in Neuroscience is a database that lists, reviews, and rates resources for teaching neuroscience at the graduate and undergraduate level.

  • 109 records

EEGbase provides information related to EEG/ERP research, including data, tools and resources. Note: You must obtain credentials from the EEGbase site to view the rest of the data.

  • 400 records

The NHGRI Elements of Morphology: Human Malformation Terminology is being developed by a group of international clinicians working in the field of dysmorphology to standardize terms used to describe human morphology, thereby increasing the utility of descriptions of human phenotype and facilitating reliable comparisons of findings among patients.

  • 937,864 records

The Ensembl produces genome databases for vertebrates and other eukaryotic species, and makes this information freely available online.

  • 52,227 records

The ENSEMBL project produces genome databases for vertebrates and other eukaryotic species, and makes this information freely available online. The ENSEMBL:FeatureLoc view indicates the genomic coordinates of human variants aggregated into ENSEMBL from a variety of sources.

  • 18,772 records

The ENSEMBL project produces genome databases for vertebrates and other eukaryotic species. The VariantPhenotypes view links human genomic variants with their curated diseases (currently limited here to OMIM diseases), aggregated into ENSEMBL from a variety of sources.

  • 3,256 records

The Epigenomics Project produces a public resource of human epigenomic data to catalyze basic biology and disease-oriented research.

  • 91 records

Eukaryotic Pathogen Database (EuPathDB) Bioinformatics Resource Center is a portal for accessing genomic-scale datasets associated with the eukaryotic pathogens (Babesia, Cryptosporidium, Encephalitozoon, Entamoeba, Enterocytozoon, Giardia, Leishmania, Neospora, Plasmodium, Theileria, Toxoplasma, Trichomonas and Trypanosoma). Additional information available at EuPathDB.

  • 27,389 records

Exon Array Browser is a data set that provides transcriptome information on several mouse nervous system cells at several stages of development. The data shows the average probe intensity for hundreds of exon probes for each cell type.

  • 11,799 records

F1000 Posters is an open access repository of conference posters and slides from across biology and medicine.

  • 1,488 records

Approved Drug Products with Therapeutic Equivalence Evaluations (Orange Book) identifies drug products approved on the basis of safety and effectiveness by the Food and Drug Administration (FDA) under the Federal Food, Drug, and Cosmetic Act. Exclusivity refers to the exclusive marketing rights granted by the FDA upon approval of a drug (more information available here).

  • 11,384 records

Approved Drug Products with Therapeutic Equivalence Evaluations (Orange Book) identifies drug products approved on the basis of safety and effectiveness by the Food and Drug Administration (FDA) under the Federal Food, Drug, and Cosmetic Act. Patents submitted on FDA Form 3542 and listed after August 18, 2003 may have a drug substance flag (indicating the sponsor submitted the patent as claiming the drug substance), a drug product flag (indicating the sponsor submitted the patent as claiming the drug product), or both. The delist flag indicates the sponsor has requested patent be delisted, but it remains listed. More information is available here and here.

  • 30,457 records

Approved Drug Products with Therapeutic Equivalence Evaluations (Orange Book) identifies drug products approved on the basis of safety and effectiveness by the Food and Drug Administration (FDA) under the Federal Food, Drug, and Cosmetic Act. For more information about the Therapeutic Equivalence Codes and other terms, please go to this information page.

  • 797,697 records

FlyBase is a database of genetic and molecular data for D. melanogaster and other Drosophila species. Flybase:Genotypes are the curated details of genetic variant flies, laboratory strains, and relevant publications.

  • 321,220 records

FlyBase is a database of genetic and molecular data for D. melanogaster and other Drosophila species. The Phenotypes view shows the curated links for phenotypes of the flies of a specified genotype, in a specified environment, attributed to a publication.

  • 526 records

GARA contains spatial distribution maps of rat olfactory bulb in response to odorant stimuli.

  • 0 records

Gemma is a resource for the meta-analysis, re-use and sharing of genomics data. This view provides an overview of the gene expression studies.

  • 308,657,161 records

Gemma provides tools and data for meta-analysis of functional genomics data.

  • 259 records

Gene Ontology Tools provides resources that enable ontological annotation of genes nomenclature, symbols and classification.
Note: The GO Tools Registry is no longer supported (see here).

  • 2,095,767 records

GeneNetwork provides resources and analysis tools for genetics research.

  • 685 records

GeneReviews are expert-authored, peer-reviewed disease descriptions ("chapters") presented in a standardized format and focused on clinically relevant and medically actionable information on the diagnosis, management, and genetic counseling of patients and families with specific inherited conditions.

  • 31,933 records

GeneWeaver provides integrated genotype-phenotype information across species, tissues and experimental paradigms, formally known as Ontological Discovery Environment (ODE).

  • 198,668 records

GENSAT contains gene expression data and maps of the mouse central nervous system.

  • 384 records

The GENSAT Retina Project provides a collection of images from cell type-specific protein expression in the retina using BAC transgenic mice.

  • 68,725 records

Gene Expression Omnibus contains gene-specific information from submitted microarray and sequencing studies.

  • 311 records

GO (Gene Ontology Consortium, composed of all major model organism databases) provides characterization of genes into functional classes based on the Gene Ontology. This DBxrefs view maintains and supplies a list of externally referenced databases used in their annotations, along with metadata on identifiers and URLs.

  • 5,353,609 records

GO (Gene Ontology Consortium, composed of all major model organism databases) provides characterization of genes into functional classes based on the Gene Ontology.

Grants.gov: Opportunity

Used in

NIDDK Information Network
  • 43,187 records

Grants.gov provides information on over 1,000 grant programs open for application.

GUDMAP: Expression

Used in

NIDDK Information Network
  • 51,837 records

GUDMAP, GenitoUrinary Molecular Anatomy Project, aggregates and provides experimental gene expression data from the genito-urinary system. 

GUDMAP: Image

Used in

NIDDK Information Network
  • 29,787 records

GUDMAP, GenitoUrinary Development Molecular Anatomy Project, aggregates and provides images of experimental gene expression data from the mouse genitourinary system. The image links to the image set, where individual images can be downloaded.

GUDMAP: Protocols

Used in

NIDDK Information Network
  • 63 records

GUDMAP Protocols provides experimental protocols and standard specifications by a variety of groups from the GenitoUrinary Development Molecular Anatomy Project (GUDMAP). 

  • 18,516 records

GWAS Catalog includes genomic studies attempting to assay at least 100,000 single nucleotide polymorphisms (SNPs). For a detailed description, see the GWAS site.

  • 3,217 records

HealthData.gov is a public repository of datasets, tools, and applications using data about health and health care.

  • 45,517 records

The HUGO Gene Nomenclature Committee assigns standardised nomenclature to human genes. This HGNC:Gene view provides gene names, symbols, and additional data on approved genes.

  • 1,151 records

The HUGO Gene Nomenclature Committee assigns standardised nomenclature to human genes. This LSDB view provides the links to the locus-specific databases for each human gene.

HIRN: Antibodies

Used in

NIDDK Information Network
  • 53 records

The Human Islet Research Network (HIRN) helps to organize and support collaborative research related to the loss of functional beta cell mass in Type 1 Diabetes. The antibodies view is a list of antibodies used by HIRN researchers. The "Antibody Name" column links to the HIRN individual antibody pages, and the "Research Resource Identifier" column links to Antibody Registry portal, where more updated information may be found.

HIRN: Mice

Used in

NIDDK Information Network
  • 19 records

The Human Islet Research Network (HIRN) helps to organize and support collaborative research related to the loss of functional beta cell mass in Type 1 Diabetes. The mice view is a list of mice used by HIRN researchers. The "Name" column links to the HIRN individual mouse pages, and the "Research Resource Identifier" column links to SciCrunch resource page, where more information can be found.

  • 228,929 records

HomoloGene is an automated system to detect genetic homolog information among common animal model species.

  • 30,303 records

The HPO group provides annotations of human phenotypes in disease. The disease to gene view is a set of known associations between genes and diseases.

  • 129,376 records

The HPO group provides annotations of human disease phenotypes, linked to OMIM, Orphanet, and DECIPHER.

  • 385,149 records

HPO annotations provide annotations of human phenotypes and diseases. This phenotype to gene view shows the associations between a phenotype and its putative causative gene based on the relationship between a gene and its known involvement in a disease.

  • 1,241 records

The Blue Brain Project contains a dataset of 3D models of rat neuronal morphologies.

  • 3,246 records

The Human Life-Table Database provides detailed mortality and population data to those interested in the history of human longevity.

  • 3,591 records

The Human Mortality Database (HMD) contains original calculations of death rates and life tables for national populations (countries or areas), as well as the input data used in constructing those tables. Life tables represent the overall mortality rates over the entire lifetimes of people born within a short time interval. Human Life-Table Database life tables are official life tables for national populations, life tables for certain regional or ethnic sub-populations within countries, and non-official life tables produced by researchers.

  • 3,982 records

The Human Brain Atlas contains sections stained for cell bodies or nerve fibers, as well as corresponding MRI sections through a living human brain.

  • 11,669 records

Internet Brain Volume Database provides neuroanatomical volumetric data for both group and individual cases.

  • 22,344 records

The International Mouse Phenotyping Consortium creates, curates, and maintains targeted knockout mutations in embryonic stem cells for 20,000 known and predicted mouse genes. The KnockoutPhenotypes view reports on the phenotypes collected from a broad-based primary phenotyping pipeline in all the major adult organ systems.

  • 3,786 records

The International Mouse Phenotyping Consortium creates, curates, and maintains targeted knockout mutations in embryonic stem cells for 20,000 known and predicted mouse genes. The MouseGenotypes view reports on the genotypes collected from a broad based primary phenotyping pipeline in all the major adult organ systems.

  • 22,289 records

The International Mouse Phenotyping Consortium creates, curates, and maintains targeted knockout mutations in embryonic stem cells for 20,000 known and predicted mouse genes. The MousePhenotypes view reports on genotypes and associated phenotypes collected from a broad-based primary phenotyping pipeline in all the major adult organ systems. All phenotype calls are found to be significant with a p-value < 1×10^-4.

  • 568,398 records

Integrated Animals is a virtual database currently indexing available animal strains and mutants from: AGSC (Ambystoma), BCBC (mice), BDSC (flies), CWRU Cystic Fibrosis Mouse Models (mice), DGGR (flies), FlyBase (flies), IMSR (mice), MGI (mice), MMRRC (mice), NSRRC (pig), NXR (Xenopus), RGD (rats), Sperm Stem Cell Libraries for Biological Research (rats), Tetrahymena Stock Center (Tetrahymena), WormBase (worms), XGSC (Xiphophorus), ZFIN (zebrafish), and ZIRC (zebrafish). Note, the IMSR data is linked, but users may need to re-execute the search if the top mouse is not returned properly.
Note: BCBC is no longer in service, so the links may not be functional.

  • 8,744,497 records

Integrated Manually Extracted Annotation is a virtual database of annotations manually created by various database curators. Each row represents an annotation item such as the reagent used in a paper or a data set link. Many of these annotations are published in PubMed as LinkOuts. (View participating resources)

  • 86,695 records

Integrated Blogs is a virtual database indexing a variety of scientific blog and news resources. A list of the participating resources is provided here.

  • 340,703 records

Integrated Cell Lines is a virtual database indexing available cell lines from: American Type Culture Collection (ATCC), Beta Cell Biology Consortium (BCBC), Cellosaurus, Coriell Cell Repositories, Drosophila Genomics Resource Center (DGRC), International Mouse Strain Resource (IMSR), International Stem Cell Registry, NIH Human Embryonic Stem Cell Registry, National Cancer Institute's Developmental Therapeutics Program (DTP) (note these are currently not available see link), and Nuclear Receptor Signaling Atlas (NURSA). Alert: The links to IMSR sometimes do not produce proper results in IMSR, we have asked them to update this, but currently users may need to take the identifier for the resource and use google to find the appropriate cell lines.

  • 271,513 records

Integrated Clinical Trials is a virtual database currently indexing clinical trials from: EU Clinical Trials Register and ClinicalTrials.gov.

  • 190,775 records

Integrated Connectivity is a virtual dataset of connectivity statements from Avian Brain Circuitry Database (ABCD), BlueBrain Bluima Connectivity, Brain Architecture Management System (BAMS), BrainMaps.org, CoCoMac,Connectome Wiki, and the Hippocampal-Parahippocampal Table of Temporal-Lobe.com.
Note: ABCD, Connectome Wiki, and the Hippocampal-Parahippocampal Table of Temporal-Lobe.com are no longer in service.

  • 2 records

The Integrated Data Annotation is a virtual database of annotations between data repositories and databases. A list of the participating resources is provided here.

  • 214,099 records

The Integrated Datasets is a virtual database currently indexing a variety of data sets. A list of the participating data resources is provided here.

  • 538 records

Integrated Disease is a virtual database that indexes authoritative information on disease and treatment options from: NINDS Disorder List and PubMed Health.

  • 42,874,516 records

Integrated Gene-Disease Interaction is a virtual database currently indexing interaction between genes and diseases from the Online Mendelian Inheritance in Man (OMIM) and the Comparative Toxicogenomics Database (CTD).

  • 2,865,063 records

Integrated Grants is a virtual database currently indexing funded research resources including NIH Research Portfolio Online Reporting Tool (RePORT) (current grants, updated monthly), International Alzheimer’s Disease Research Portfolio (IADRP) database and ResearchCrossroads (1970-2008, defunct as of 2009).
Note: ResearchCrossroads is no longer in service.

  • 2,873 records

Integrated Models is a virtual database currently indexing computational models from: CellML, ModelDB, Open Source Brain, SimTK.

  • 8,321 records

Integrated Podcasts is a virtual database currently indexing multiple podcast resources. A list of the participating resources is provided here.

  • 14,825 records

Integrated Videos is a virtual database indexing videos and other multimedia from: NIH VideoCast, GoCognitive, UCSF Laboratory for Visual Neuroscience, The Guardian: Science Videos, BioInteractive, CLARITY resources and Journal of Visualized Experiments (JoVE). JoVE is a peer-reviewed, PubMed-indexed journal devoted to the publication of biological research in the video format, and NIH VideoCast is a vast archive of scientific talks given at various NIH meetings and functions.

  • 2,952 records

IonChannelGenealogy provides a quantitative assay of publicly available ion channel models. Descriptions of the columns are available here.

ISCC: Antibodies

Used in

NIDDK Information Network
  • 96 records

The ISCC Antibody Collection is a repository of antibodies relevant to intestinal epithelial stem cell biology.

ISCC: Protocol

Used in

NIDDK Information Network
  • 15 records

The ISCC Protocol Library contains protocols relevant to intestinal stem cell biology.

  • 593 records

Information eXtraction from Images (IXI) dataset provides MR images from normal, health human subjects.

  • 233 records

The Kawasaki Disease Dataset contains results of blood tests in patients with Kawasaki Disease.

  • 1,233 records

KEGG is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies. The Disease view describes the curated links between a disease, its pathways, human genes, and relevant literature.

  • 64,186 records

KEGG is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies. KEGG:Orthologs describes the curated links between a gene (ortholog) class and it's species-specific genes.

  • 489 records

KEGG is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies. KEGG:PathwayGeneOrthologs describes the curated links between a KEGG Pathway and its participating genes (via ortholog class).

  • 47,304 records

PDSP Ki Database provides affinity values of interactions between common drugs and brain receptors.

  • 26,857 records

The Kravitz Dataset1 consists of datasets published in Kravitz et al., 2012. The Mouse 1 view is a set of recordings for one mouse.

  • 78,599 records

The Kravitz Dataset1 consists of datasets published in Kravitz et al., 2012. The Mouse 2 view is a set of recordings for one mouse.

  • 48,797 records

The Kravitz Dataset1 consists of datasets published in Kravitz et al., 2012. The Mouse 3 view is a set of recordings for one mouse.

  • 49 records

UCSF Laboratory for Visual Neuroscience provides high-resolution images of brain regions, circuitry and neurons related to visual system.

  • 5,085 records

The Lifespan Observations Database collects published lifespan data across multiple species.

LIPID MAPS Proteome Database: Gene

Used in

NIDDK Information Network
  • 8,769 records

The LIPID MAPS Proteome Database (LMPD) provides information on gene and proteins associated with lipids.

LIPID MAPS Structure Database: Compounds

Used in

NIDDK Information Network
  • 40,772 records

The LIPID MAPS Structure Database (LMSD) provides structural data and annotations of biologically relevant lipids.

  • 127,060 records

Mouse Genome Informatics offered by The Jackson Laboratory includes information on integrated genetic, genomic, and biological data. In this MouseGenotypes view, genotypes are mapped to their component parts, including genes, alleles, and genetic backgrounds.

  • 315,829 records

Mouse Genome Informatics offered by The Jackson Laboratory includes information on integrated genetic, genomic, phenotypic, and biological data of the laboratory mouse. This Phenotypes view presents the curated relationships between genotypes and phenotypes.

  • 51,032 records

MGI Transgenes contains annotated gene expression data for transgenes and knock in alleles. 

MMPC: Protocols

Used in

NIDDK Information Network
  • 224 records

National Mouse Metabolic Phenotyping Centers provides the protocols used by MMPC for mouse models of diabetes.

MMPC: Resources

Used in

NIDDK Information Network
  • 203 records

National Mouse Metabolic Phenotyping Centers provide information and data about mouse models of diabetes.

  • 1,221 records

The ModelDB provides computational neuroscience models. ModelDB is tightly coupled with NeuronDB

  • 49 records

The Model Run is a dataset of output of neuron models through the Trestles supercomputer.

  • 659,657 records

The Monarch Integrated Disease Models aggregates experimental models of disease from MGI, RGD, ZFIN, CORIELL Cell Line Database, WB, FB, and OMIA, listing asserted and inferred models of disease (via orthology from PANTHER).

  • 63,700 records

This view integrates orthology calls of human genes to model organisms from a variety of sources, including PANTHER, ZFIN (and others TBD).

  • 29,067,279 records

The MonarchInitiative has created a list of equivalent and alternative identifiers for genes and proteins, drawn from a number of external resources including: NCBI, BioGRID, ENSEMBL, MGI, RGD, WB, UniProt, KEGG, OMIM, DrugBank, PharmGKB, and ZFIN.

  • 376 records

The Mouse Phenome Database is a project at The Jackson Laboratory that collects and curates mouse strain survey data for behavior, physiology, and anatomy. Data are available for inbred and recombinant inbred strains, chromosome substitution strains, other classical panels, Collaborative Cross (CC) lines and Diversity Outbred (DO) populations.

  • 18,127 records

The Mouse Phenome Database is a project at the Jackson Laboratory that characterizes mouse studies based on the types of measurements used in each study. This MeasurementDefinitions view shows the curated mappings of the assay measurements to relevant phenotype, trait, and anatomy terms.

  • 10,377 records

The Mouse Phenome Database is a project at The Jackson Laboratory which collects and curates mouse strain survey data for behavior, physiology, and anatomy. Data are available for inbred and recombinant inbred strains, chromosome substitution strains, other classical panels, Collaborative Cross (CC) lines and Diversity Outbred (DO) populations. The MPD:StrainPhenotypes view computes the extreme outlier phenotypes (>2 s.d.) as compared to the overall mean for each assay, and maps the quantitative measurements to their qualitative phenotype. (The strains measured for each assay varies, and therefore the means computed may be drawn from collections of different strains.)

  • 16,300 records

The Mind Research Network (MRN) is an independent non-profit organization dedicated to advancing the diagnosis and treatment of mental illness and other brain disorders. This view does not link back to MRN records because that functionality has not yet been added to MRN, users will need to re-execute their query in the MRN site.

  • 16,894,135 records

NCBI Gene provides information for known and predicted genes from a wide range of species. The GeneInfo view provides an overview of genes, including the official symbol, the NCBI Gene ID, the source organism, and additional data.

  • 1,163,731 records

NCBI Gene provides information for known and predicted genes from a wide range of species. The GeneRIF view provides a listing of genes and their associated GeneRIFs (Gene Reference into Function).

  • 10,071,490 records

NCBI Gene provides information for known and predicted genes from a wide range of species. The GeneToPubmed view provides a mapping from genes to associated PubMed publications.

  • 1,609,518 records

The NCBI Taxonomy Database is a classification and nomenclature of all organisms that are represented in the public genetic sequence databases with at least one nucleotide or protein sequence.

  • 417 records

The NIMH Chemical Synthesis and Drug Supply Program synthesizes, purifies, and distributes otherwise unavailable compounds to stimulate research in psychopharmacology relevant to mental health. Column abbreviations: HBA - # of hydrogen-bond acceptor groups; HBD - # of hydrogen-bond donor groups; RotB - # of freely rotatable bonds; AlogP - Ghose-Crippen octanol-water partition coefficient; TPSA - Topological Polar Surface Area.

  • 14 records

Neurodatabase.org contains neurophysiological data, such as single-unit recordings, available for download. Note: Neurodatabase is no longer accessible through the web.

  • 1,767 records

NeuroElectro is a database of elecrophysiological properties text-mined from the biomedical literature as a function of neuron type.

  • 711 records

The Brain Region Registry is a curated knowledge base of brain regions developed within the Neurolex in collaboration with the International Neuroinformatics Coordinating Facility.

  • 295 records

The Neuron Registry is a curated knowledge base of neurons developed within Neurolex in collaboration with the International Neuroinformatics Coordinating Facility.

  • 1,347 records

NeuroML database is a curated relational database that provides for the storage and retrieval of computational neuroscience model.

  • 62,275 records

NeuroMorpho.Org contains a curated repository of digitally reconstructed neurons.

  • 605 records

NeuronDB at SenseLab provides data about voltage-gated conductance properties for submitted neurons. 

  • 682 records

NeuronDB at SenseLab provides data about receptor subtype properties for submitted neurons. 

  • 120 records

NeuronDB at SenseLab provides data about neurotransmitter properties for submitted neurons. 

  • 363,965 records

NeuroSynth is a platform for large-scale, automated synthesis of functional magnetic resonance imaging (fMRI) data extracted from published articles using text mining tools. Note: The website is currently under maintenance, so the links may not be fully functional.

  • 23,293 records

NeuroVault is a public repository where researchers can publicly store and share unthresholded statistical brain activation maps produced by MRI and PET studies.

  • 56 records

NIDA Data Share disseminates data from completed clinical trials related to drug abuse and addiction. This view gives an overview of the studies within NIDA Data Share.

NIDDK Central Repository: Data

Used in

NIDDK Information Network
  • 152 records

An archive of clinical data and documentation from NIDDK-sponsored studies.

  • 1,391 records

NITRC-IR is an NITRC-hosted image repository (IR) to support NIfTI and DICOM neuroimaging data that is searchable by metadata, such as handedness and gender, across projects. NITRC-IR is powered by XNAT and contains over a dozen datasets, with thousands of subjects and imaging sessions. One such project is the 1000 Functional Connectomes Project. Please contact nitrcinfo@nitrc.org if you have neuroimaging data to share.

NURSA: Molecules

Used in

NIDDK Information Network
  • 677 records

Curated information on nuclear receptors, ligands and co-regulators from the Nuclear Receptor Signaling Atlas (NURSA). Additional information available through NURSA.

NURSA: Animal Models

Used in

NIDDK Information Network
  • 3 records

NURSA Animal Models has a list of animals models from NURSA.

NURSA: Antibodies

Used in

NIDDK Information Network
  • 47 records

NURSA Antibody a list of the antibodies used in generating NURSA datasets.

NURSA: Cell Lines

Used in

NIDDK Information Network
  • 5 records

Nuclear Receptor Signaling Atlas provides access to data related to nuclear receptors and nuclear receptor coregulators.

NURSA: Datasets

Used in

NIDDK Information Network
  • 547 records

NURSA Datasets contains data related to nuclear receptors and nuclear receptor coregulators.

NURSA: PCR Primer

Used in

NIDDK Information Network
  • 54 records

NURSA PCR Primers contain primer sequences to amplify nuclear receptors.

  • 48 records

OdorMapDB contains spatial activation maps of olfactory bulb following odorant stimuli.

  • 15,516 records

Online Mendelian Inheritance in Animals (OMIA) is a data set describing phenotype relationships with individual breeds and genes. This BreedPhenotypes view curates species and breed-specific-phenotype relationships for non-model organisms.

  • 21,895 records

Online Mendelian Inheritance in Animals (OMIA) is a resource describing phenotype relationships with between breeds and genes. This GenePhenotypes view curates gene-phenotype relationships for non-model organisms.

Omics Discovery Index: Datasets

Used in

NIDDK Information Network
  • 86,847 records

The Omics Discovery Index (OmicsDI) is a portal that facilitates discovery and access of omics datasets by aggregating metadata across a group of transcriptomics, genomics, proteomics and metabolomics resources.

  • 82,979 records

The Omics Discovery Index (OmicsDI) is a portal that facilitates discovery and access of omics datasets by aggregating metadata across a group of transcriptomics, genomics, proteomics and metabolomics resources.

  • 5,741 records

OMIM is a human curated authoritative source of information about disease to gene connections. The DiseaseGeneAssociation view is organized by the OMIM phenotype/disease identifiers, and lists all genes and text annotated to a given disease or phenotype. more about OMIM.

  • 21,164 records

Online Mendelian Inheritance in Man (OMIM) curates human genetic diseases from the literature. Diseases and phenotypes are annotated to both the gene and allelic variant level. This GeneAllelePhenotype view reflects the allelic phenotypes only, which do not reference the omim phenotype identifiers directly.

  • 31,897 records

Online Mendelian Inheritance in Man (OMIM) curates human genetic diseases from the literature. The VariantPhenotype view describes the curated relationships between genes, allelic variants (if available), and phenotype.

  • 627 records

One Mind Biospecimen Bank Listing is an international registry of biomaterial supply resources - visit SciCrunch to register your resource.

  • 103 records

Open Source Brain provides annotated computational models.

  • 160 records

The OpenfMRI Project contains a repository of fMRI datasets submitted by and available to the research community.

  • 2,225 records

Olfactory Receptor DataBase (ORDB) is a chemoreceptor database, which contains tools to analyze the functions of olfactory-related G protein–coupled receptors.

  • 6,618 records

Orphanet is the reference portal for information on rare diseases and orphan drugs, for all audiences. Orphanet’s aim is to help improve the diagnosis, care and treatment of patients with rare diseases. This view displays information on genes associated with rare diseases.

  • 9,399 records

Orphanet is the reference portal for information on rare diseases and orphan drugs, for all audiences. Orphanet’s aim is to help improve the diagnosis, care and treatment of patients with rare diseases. This view displays information on disorders including clinical signs, synonyms, and epidemiological data.

  • 249,850 records

The Paleobiology Database (PaleoBioDB) is a database for paleontological data. This view provides collection-based taxonomic information for organisms of all geological ages.

  • 9,811,981 records

Panther contains a classification system that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The Panther:Orthologs view is the curated orthology relationships between genes for human, mouse, rat, fish, worm, and fly.

  • 75 records

PeptideAtlas provides a multi-organism, publicly accessible compendium of peptides identified in a large set of tandem mass spectrometry proteomics experiments collected for human, mouse, yeast, and several other organisms.

  • 88 records

Physiobank archives well-characterized digital recordings of physiologic signals and related data for use by the biomedical research community.

  • 166 records

Gait in Parkinson's Disease dataset contains gait measurements of patients with idiopathic Parkinson's Disease and matched healthy controls. 

  • 64 records

Gait Dynamics in Neuro-Degenerative Disease Database contains gait measurements in patients with Parkinson's, Huntington's and Amyotrophic Lateral Sclerosis with matched health controls. 

  • 2,112 records

The Project Tycho maintains a database of public health data that includes data from weekly disease reports for the United States dating back to 1888. Note: You must obtain credentials from the Tycho site to view the data.

  • 3,581 records

ProteomeXchange provides access to mass spectrometry-based proteomics data from the repositories PRIDE, PeptideAtlas, and MassIVE.

  • 19,179 records

PubMed Health provides information on prescription drugs used to evaluate and treat contemporary diseases.

  • 262 records

PubMed Health provides information on prescription health tests used to evaluate and treat contemporary diseases.

  • 11 records

Rancho BioSciences view provides manually curated datasets from NCBI’s Gene Expression Omnibus related to oncology, inflammation and asthma.

RePORTER: CurrentNIHGrants

Used in

NIDDK Information Network
  • 269,877 records

NIH RePORTER provides a list of funded grants across NIH institutes.

  • 15,195 records

SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, materials, and more - visit SciCrunch to register your resource.

  • 51 records

The Science and Research Data Catalog contains high-value public science and research data sets from the federal government.

  • 6,144 records

AutDB provides information on animal models used in autism research.

  • 950 records

Simtk Neuromuscular Models Library contains physics-based computational models of biological structures.

  • 20 records

The studyforrest.org is an MRI data repository that holds a set of 7-Tesla MRI images and behavioral metadata.

  • 52,105 records

SumsDB contains functional activation foci from published neuroimaging studies. SumsDB is no longer in service.

  • 576 records

SynapseWeb provides high-resolution images of central nervous system cells.

T1DBase: Human GRCh37 Variants

Used in

NIDDK Information Network
  • 6,244 records

T1DBase provides information on human type 1 diabetes loci based on genome build GRCh37. Note: In October 2016, T1DBase merged with ImmunoBase.

T1DBase: Human GRCh38 Variants

Used in

NIDDK Information Network
  • 6,456 records

T1DBase provides information on human type 1 diabetes loci based on genome build GRCh38. Note: In October 2016, T1DBase merged with ImmunoBase.

T1DBase: Human NCBI 36 Variants

Used in

NIDDK Information Network
  • 3,232 records

T1DBase provides information on human type 1 diabetes loci based on genome build NCBI 36. Note: In October 2016, T1DBase merged with ImmunoBase.

  • 3,673 records

Toxin and Toxin Target Database (T3DB) contains detailed descriptions, effects, treatments and mechanisms of toxins affecting human health.

  • 71 records

The Cancer Imaging Archive is a large archive of medical images of cancer accessible for public download. The Collections view provides a list of organized into purpose-built collections available on TICA.

  • 13,451 records

The USC Multimodal Connectivity Database (UMCD) is a repository for connectivity matrices derived from neuroimaging data described in this paper.

  • 3,391 records

Visiome Platform is an interdisciplinary repository of data, models and tools related to vision research.

  • 2,880 records

VISTA is a central resource for experimentally validated human and mouse noncoding fragments with gene enhancer activity as assessed in transgenic mice. Most of these noncoding elements were selected for testing based on their extreme conservation in other vertebrates or epigenomic evidence (ChIP-Seq) of putative enhancer marks.

  • 48,388 records

WikiPathways is an open, collaborative platform dedicated to the curation of biological pathways.

  • 137,974 records

WormBase provides anatomical and genetic information of C. elegans and related research nematodes. The GeneExprLoc view shows the localization of gene expression in C. elegans anatomy.

  • 566,633 records

WormBase provides anatomical and genetic information of C. elegans and related research nematodes. This Worm:VariantPhenotypes view curates the relationship between an allele and a phenotype, where the allele can be a genetic or RNAi-induced change.

  • 28,827 records

WormBase provides anatomical and genetic information of C. elegans and related research nematodes. This WormGenotypes view shows C. elegans strains, including those from the Caenorhabditis Genetics Center (CGC), being mapped to WormBase genotypes, genes, and alleles.

  • 527 records

WU-Minn HCP released behavioral and 3T MR imaging data from over 500 healthy adult participants with 14 subjects also scanned in resting-state MEG (rMEG) and task MEG (tMEG). This view includes the publicly available data from 500 subjects. You must obtain credentials from the HCP site to view the rest of the data.

  • 806 records

XNAT contains cross-sectional MRI data in young, middle aged, nondemented and demented older adults submitted by the Open Access Series of Imaging Studies (OASIS) project and is freely available to the research community.

  • 117 records

The Extensible Neuroimaging Archive Toolkit is an open-source imaging informatics platform designed to facilitate management and exploration of medical imaging and related data.

  • 27 records

Yale Protein Expression Database (YPED) is an open source system for storage, retrieval, and integrated analysis of large amounts of data from high throughput proteomic technologies.

  • 1,748 records

Yuste's laboratory attempts to reverse-engineer the cortical microcircuit using brain slices from mouse neocortex as the experimental preparation to present reconstructions of cortical neurons.

  • 9,149 records

The Zebrafish Model Organism Database (ZFIN) contains gene and gene expression data from zebrafish research strains. This ExtrinsicGenotypes view provides the results the of application of morpholino reagents in an experimental context. These are extracted from the ZFIN-supplied experimental conditions, and linked to the targeted genes and associated properties following the GENO genotype ontology model as developed by the Monarch Initiative.

  • 26,514 records

The Zebrafish Model Organism Database (ZFIN) contains gene and gene expression data from zebrafish research strains. This FishEffectiveGenotypes view provides the resulting combination of intrinsic (organismal) and extrinsic (experimental) genotype. These are extracted and built from ZFIN genotype-phenotype data following the GENO genotype ontology model as developed by the Monarch Initiative.

  • 162,357 records

The Zebrafish Model Organism Database (ZFIN) contains gene and gene expression data from zebrafish research strains. This Gene Expression view provides information about the localization of gene expression in Zebrafish anatomy.

  • 65,460 records


  • 112,664 records

The Zebrafish Model Organism Database (ZFIN) contains gene and gene expression data from zebrafish research strains.

  • 93,276 records

The ZFIN Genotype-Phenotype View contains Genotype-to-Phenotype mappings in ZFIN, with experimental-environmental context. This Genotype-Phenotype view is a combination of intrinsic (organismal) and extrinsic (experimental/morphant) genotypes, in the context of environmental conditions. The effective genotypes are extracted and built from ZFIN genotype-phenotype data following the GENO genotype ontology model as developed by the Monarch Initiative. 

  • 23,731 records

The Zebrafish Model Organism Database (ZFIN) contains gene and gene expression data from zebrafish research strains. This OrganismGenotypes view is a data set mapped to genotypes, genes, and alleles.