Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
| Name | Authors | DOI | Group |
Summary |
Associated Publications |
RRIDs used | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Gamma-diversity partitioning of gobiid fishes (Teleostei: Gobiidae) ensemble along of Eastern Tropical Pacific: biological inventory, latitudinal variation and species turnover Resource Report Resource Website |
Omar Valencia | 10.17504/protocols.io.s3iegke | Results of the additive and multiplicative diversity partitioning of gobiid fishes | Valencia-Méndez O, Rodríguez-Zaragoza FA, Calderon-Aguilera LE, Domínguez-Domínguez O, López-Pérez A (2018) Gamma-diversity partitioning of gobiid fishes (Teleostei: Gobiidae) ensemble along of Eastern Tropical Pacific: Biological inventory, latitudinal variation and species turnover. PLoS ONE 13(8): e0202863. doi: 10.1371/journal.pone.0202863 | Universidad Autónoma Metropolitana - Iztapalapa | https://doi.org/10.1371/journal.pone.0202863 | 2 | 2018 | Omar Valencia 2018. Gamma-diversity partitioning of gobiid fishes (Teleostei: Gobiidae) ensemble along of Eastern Tropical Pacific: biological inventory, latitudinal variation and species turnover. protocols.io dx.doi.org/10.17504/protocols.io.s3iegke | 2021-03-29 03:10:12 | ||
|
TissueCyte Specimen Embedding Acrylamide Coembedding Resource Report Resource Website |
Allen Institute for Brain Science | 10.17504/protocols.io.bdpvi5n6 | BICCN, Allen Institute for Brain Science | This protocol describes the preparation of a fixed mouse brain specimen bonded to an agarose block for blockface imaging and sectioning using the TissueCyte 1000 system.Note: Research reported in this publication was supported by the National Institute Of Mental Health of the National Institutes of Health under Award Number U19MH114830. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health. | Allen Institute | 2 | 2020 | Allen Institute for Brain Science 2020. TissueCyte Specimen Embedding Acrylamide Coembedding. protocols.io dx.doi.org/10.17504/protocols.io.bdpvi5n6 | 2021-03-29 03:10:13 | |||
|
PROTOCCOLS FOR PREPARATION OF BLOOD FILMS, REPORTING OF MALARIA PARASITES, BLOOD GROUPING AND QUESTIONNAIRE DESIGN Resource Report Resource Website |
Kwame Adusei, Alex Owusu-Ofori | 10.17504/protocols.io.pq6dmze | Transfusion-transmitted malaria, Donor prevalence and health worker knowledge and practices. Protocols for preparation of blood smears (Thick and thin films), reporting of malaria parasites, blood grouping and design of questionnaires. | Department of Medical Laboratory Service, School of Allied Health Sciences, Kwame Nkrumah University of Science and Technology Kumasi, Ghana ,Tel: +233 501365180, Email: [email protected], Department of Clinical Microbiology School of Medical Sciences, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana. Tel: +233 209149370, Email: [email protected] | 1 | 2018 | Kwame Adusei, Alex Owusu-Ofori 2018. PROTOCCOLS FOR PREPARATION OF BLOOD FILMS, REPORTING OF MALARIA PARASITES, BLOOD GROUPING AND QUESTIONNAIRE DESIGN. protocols.io dx.doi.org/10.17504/protocols.io.pq6dmze | 2021-03-29 03:10:13 | ||||
|
Coccidioides_soil_habitat_model Resource Report Resource Website |
Robert Dobos | 10.17504/protocols.io.bh6gj9bw | Dobos RR, Benedict K, Jackson BR, McCotter OZ (2021) Using soil survey data to model potential Coccidioides soil habitat and inform Valley fever epidemiology. PLoS ONE 16(2): e0247263. doi: 10.1371/journal.pone.0247263 | Kaitlin Benedict, Brendan R. Jackson, Orion Z. McCotter | https://doi.org/10.1371/journal.pone.0247263 | 1 | 2020 | Robert Dobos 2020. Coccidioides_soil_habitat_model. protocols.io dx.doi.org/10.17504/protocols.io.bh6gj9bw | 2021-03-29 03:10:13 | |||
|
Gibson Assembly (NEBuilder) Resource Report Resource Website |
Snehadri Sinha | 10.17504/protocols.io.gzebx3e | Aalto-Helsinki 2016 | Gibson assembly using NEBuilder HiFi DNA assembly kit. Specification of the original NEB protocol. | 1 | 2017 | Snehadri Sinha 2017. Gibson Assembly (NEBuilder). protocols.io dx.doi.org/10.17504/protocols.io.gzebx3e | 2021-03-29 03:10:07 | ||||
|
RA STRAIN SUPPLEMENT Resource Report Resource Website |
Manuel Richter | 10.17504/protocols.io.8wjhxcn | RA STRAIN SUPPLEMENT | University of Giessen | 1 | 2019 | Manuel Richter 2019. RA STRAIN SUPPLEMENT. protocols.io dx.doi.org/10.17504/protocols.io.8wjhxcn | 2021-03-29 03:10:07 | ||||
|
Ultrasonographic measurements of the right femoral vein cross-sectional area Resource Report Resource Website |
Dorota Czyzewska1*, Andrzej Ustymowicz2, Radoslaw Kowalewski3¶, Anna Zurada4¶, Jaroslaw Krejza5 | 10.17504/protocols.io.iq5cdy6 | Exclusion criteria: lower limb varices, history of leg surgery, trauma, infection, or thromboembolic events.Ultrasound examinations are performed in B-mode technique, equipped with a linear broadband (7.5-14-MHz) transducer. The right femoral vein and the inguinal ligament are examined in a supine position. The inguinal ligament is identified along its longitudinal axis. The measurements levels are identified as follow:- proximal level: 20 mm caudally to the inguinal ligament identified along the femoral artery imaged with US- distal level: 20 mm caudally to the inguinal crease visually identified and along the femoral artery imaged with USThe cross-sectional area (CSA) of the right femoral vein is examined at both levels in transverse plane and is measured automatically after manual tracing of the vessel on a static image in three leg positions: abduction, abduction + external rotation, abduction + external rotation + 90º knee flexion/frog-leg. Attention must be taken to avoid any compression or displacement of the examined vein. | Czyzewska D, Ustymowicz A, Kowalewski R, Zurada A, Krejza J (2017) Cross-sectional area of the femoral vein varies with leg position and distance from the inguinal ligament. PLoS ONE 12(8): e0182623. doi: 10.1371/journal.pone.0182623 | 1First Department of Radiology, Maria Sklodowska-Curie Memorial Cancer Center, Institute of Oncology, Warsaw, Poland 2Department of Radiology, Medical University of Bialystok, Bialystok, Poland 3Department of Vascular Surgery and Transplantation, Medical University of Bialystok, Bialystok, Poland 4Department of Anatomy, Faculty of Medicine University of Varmia and Mazury in Olsztyn, Olsztyn, Poland 5Institute of Innovative Medicine, Advanced Biomedical Image Laboratory, Bialystok, Poland., 1First Department of Radiology, Maria Sklodowska-Curie Memorial Cancer Center, Institute of Oncology, Warsaw, Poland 2Department of Radiology, Medical University of Bialystok, Bialystok, Poland 3Department of Vascular Surgery and Transplantation, Medical University of Bialystok, Bialystok, Poland 4Department of Anatomy, Faculty of Medicine University of Varmia and Mazury in Olsztyn, Olsztyn, Poland 5Institute of Innovative Medicine, Advanced Biomedical Image Laboratory, Bialystok, Poland., 1First Department of Radiology, Maria Sklodowska-Curie Memorial Cancer Center, Institute of Oncology, Warsaw, Poland 2Department of Radiology, Medical University of Bialystok, Bialystok, Poland 3Department of Vascular Surgery and Transplantation, Medical University of Bialystok, Bialystok, Poland 4Department of Anatomy, Faculty of Medicine University of Varmia and Mazury in Olsztyn, Olsztyn, Poland 5Institute of Innovative Medicine, Advanced Biomedical Image Laboratory, Bialystok, Poland., 1First Department of Radiology, Maria Sklodowska-Curie Memorial Cancer Center, Institute of Oncology, Warsaw, Poland 2Department of Radiology, Medical University of Bialystok, Bialystok, Poland 3Department of Vascular Surgery and Transplantation, Medical University of Bialystok, Bialystok, Poland 4Department of Anatomy, Faculty of Medicine University of Varmia and Mazury in Olsztyn, Olsztyn, Poland 5Institute of Innovative Medicine, Advanced Biomedical Image Laboratory, Bialystok, Poland., 1First Department of Radiology, Maria Sklodowska-Curie Memorial Cancer Center, Institute of Oncology, Warsaw, Poland 2Department of Radiology, Medical University of Bialystok, Bialystok, Poland 3Department of Vascular Surgery and Transplantation, Medical University of Bialystok, Bialystok, Poland 4Department of Anatomy, Faculty of Medicine University of Varmia and Mazury in Olsztyn, Olsztyn, Poland 5Institute of Innovative Medicine, Advanced Biomedical Image Laboratory, Bialystok, Poland. | https://doi.org/10.1371/journal.pone.0182623 | 1 | 2017 | Dorota Czyzewska1*, Andrzej Ustymowicz2, Radoslaw Kowalewski3¶, Anna Zurada4¶, Jaroslaw Krejza5 2017. Ultrasonographic measurements of the right femoral vein cross-sectional area. protocols.io dx.doi.org/10.17504/protocols.io.iq5cdy6 | 2021-03-29 03:10:08 | ||
|
2XYT Medium (Version 2-0) Haseloff Lab Resource Report Resource Website |
Fernando Guzman Chavez | 10.17504/protocols.io.bigekbte | Work instruction for 2xYT and 2xYTG medium preparationFollowing this recipe, you will obtain 1L of 2XYT medium2X YTis a standard growth medium used to cultivateE. coli. In cell-free system, this medium is commonly used to growth the cells. .justify:after { content: ""; display:inline-block; width: 100%; } .justify:after { content: ""; display:inline-block; width: 100%; } NOTE :The protocol described here is an adaptation from these papers:Adam D. Silverman, Nancy Kelley-Loughnane, Julius B. Lucks, and Michael C. Jewett (2019).Deconstructing Cell-Free Extract Preparation for in Vitro Activation of Transcriptional Genetic Circuitry. ACS Synthetic Biology, 403-414. DOI: 10.1021/acssynbio.8b00430.Andriy Didovyk, Taishi Tonooka, Lev Tsimring, and Jeff Hasty. (2017).Rapid and Scalable Preparation of Bacterial Lysates for Cell-Free Gene Expression. ACS Synthetic Biology, 2198-2208. DOI: 10.1021/acssynbio.7b00253. | University of Cambridge | 1 | 2020 | Fernando Guzman Chavez 2020. 2XYT Medium (Version 2-0) Haseloff Lab. protocols.io dx.doi.org/10.17504/protocols.io.bigekbte | 2021-03-29 03:10:08 | ||||
|
CD200 and CD200R levels in psoriasis patients Resource Report Resource Website |
Carmen Farid, Aisha A. Mahmoud, Hanaa M. Donia, Hafsa M. Ghatesh | 10.17504/protocols.io.6zihf4e | Serum soluble CD200 levels in psoriasis patients was measured by ELISA (Human CD200 PicoKine™ ELISA Kit, Boster Biological Technology, Pleasanton CA, USA, Catalog # EK0993)), and CD200R expression level on both peripheral blood monocytes and lymphocytes were measured by flowcytometry using human CD200 R1 conjugated antibody(Human CD200 R1 Fluorescein-conjugated Antibody, Bio-Techne,Minneapolis, Minnesota, USA, Catalog # FAB3414F)). Cells were analyzed on a FACSCalibur flow cytometer using CellQuest pro software (BD Biosciences, San Diego, CA, USA). Membrane fluorescence intensity was estimated and expressed as mean fluorescence intensity (MFI). | Ismail AA, Donia HM, Ghatesh HM, Farid CI (2020) CD200/CD200 receptor axis in psoriasis vulgaris. PLoS ONE 15(3): e0230621. doi: 10.1371/journal.pone.0230621 | Department of Dermatology, Venereology and Andrology; Faculty of Medicine; Alexandria University; Egypt. , Department of Dermatology, Venereology and Andrology; Faculty of Medicine; Alexandria University; Egypt. , Department of Clinical and Chemical pathology; Faculty of Medicine; Alexandria University; Alexandria; Egypt. , Department of Dermatology, Venereology and Andrology; Faculty of Medicine; Alexandria University; Alexandria; Egypt. | https://doi.org/10.1371/journal.pone.0230621 | 1 | 2019 | Carmen Farid, Aisha A. Mahmoud, Hanaa M. Donia, Hafsa M. Ghatesh 2019. CD200 and CD200R levels in psoriasis patients. protocols.io dx.doi.org/10.17504/protocols.io.6zihf4e | 2021-03-29 03:10:07 | ||
|
Purification of avian egg yolk immunoglobulins using the water dilution method and precipitation with isopropanol. Resource Report Resource Website |
Angel Justiz-Vaillant | 10.17504/protocols.io.bjvpkn5n | University of the West Indies, [email protected] | University of the West Indies St. Augustine | 1 | 2020 | Angel Justiz-Vaillant 2020. Purification of avian egg yolk immunoglobulins using the water dilution method and precipitation with isopropanol. . protocols.io dx.doi.org/10.17504/protocols.io.bjvpkn5n | 2021-03-29 03:10:08 | ||||
|
Remove unadsorbed phages Resource Report Resource Website |
Mathias Middelboe, Amy M. Chan, and Sif K. Bertelsen | 10.17504/protocols.io.drb52m | VERVE Net | For use in "One-step growth experiments (cyanophages)" | Manual of Aquatic Viral Ecology, Manual of Aquatic Viral Ecology, Manual of Aquatic Viral Ecology | 1 | 2016 | Mathias Middelboe, Amy M. Chan, and Sif K. Bertelsen 2016. Remove unadsorbed phages. protocols.io dx.doi.org/10.17504/protocols.io.drb52m | 2021-03-29 03:10:08 | |||
|
Guide RNA Library Transduction of Cas9 Cancer Cell Lines Resource Report Resource Website |
Verity Goodwin, Emily Souster, Charlotte Beaver, Adam Jackson, Rizwan Ansari, Mathew Garnett, Fiona Behan | 10.17504/protocols.io.bg2njyde | Cellular Generation and Phenotyping | This protocol is for the whole-genome CRISPR screening of stably expressing Cas9 cancer cell lines in triplicate using the commercially available Kusuke Yusa v1.1 whole genome gRNA library. It can be adapted for other gRNA libraries, under the assumption that there is a BFP reporter in the gRNA library. The protocol can be followed assuming the following is known:- The number of cells to be transduced - The number of days required for screening- How many cells to maintain throughout the screen- The number of cells required per pellet- The required coverage of the libraryThis protocol takes 16 days.Process diagram: | Wellcome Sanger Institute, Wellcome Sanger Institute, Wellcome Sanger Institute, Wellcome Sanger Institute, Wellcome Sanger Institute, Wellcome Sanger Institute, Wellcome Sanger Institute | 1 | 2020 | Verity Goodwin, Emily Souster, Charlotte Beaver, Adam Jackson, Rizwan Ansari, Mathew Garnett, Fiona Behan 2020. Guide RNA Library Transduction of Cas9 Cancer Cell Lines. protocols.io dx.doi.org/10.17504/protocols.io.bg2njyde | 2021-03-29 03:10:08 | |||
|
Hasselt University protocol for maternal hemodynamic profiling Resource Report Resource Website |
Wilfried Gyselaers, Kathleen Tomsin, Staelens Anneleen, Vonck Sharona | 10.17504/protocols.io.tffejjn | A maternal cardiovascular profile was assessed in every pregnant woman combining three non-invasive techniques to obtain information about arteries, veins, heart and body fluid content (Table 1). A standardized protocol was used as reported in previous studies, as enlisted below. | Hasselt University, Hasselt University, Hasselt University, Hasselt University | 1 | 2018 | Wilfried Gyselaers, Kathleen Tomsin, Staelens Anneleen, Vonck Sharona 2018. Hasselt University protocol for maternal hemodynamic profiling. protocols.io dx.doi.org/10.17504/protocols.io.tffejjn | 2021-03-29 03:10:08 | ||||
|
Scanorama Resource Report Resource Website |
Brian Hie, Bryan Bryson, Bonnie Berger | 10.17504/protocols.io.9gch3sw | Human Cell Atlas Method Development Community | Scanorama enables efficient integration of heterogeneous scRNA-seq data sets. | Massachusetts Institute of Technology, Massachusetts Institute of Technology, Massachusetts Institute of Technology | http://scanorama.csail.mit.edu | 1 | 2019 | Brian Hie, Bryan Bryson, Bonnie Berger 2019. Scanorama. protocols.io dx.doi.org/10.17504/protocols.io.9gch3sw | 2021-03-29 03:10:09 | ||
|
Genomic mapping of transformed DNA fragments Resource Report Resource Website |
Oskar Johansson, Adrian Clarke | 10.17504/protocols.io.yq2fvye | Protist Research to Optimize Tools in Genetics (PROT-G) | Mapping of transformed DNA within mutated diatoms. A stepwise specific PCR reaction that allow for identification of genome location of transformed fragments such as antibiotic resistance genes or GFP constructs. Degenerate primer 1: 5' - GCCGGACTTAGCGAGCA TGTGTAGTACCTTGCCG ATCCTNASATANSATANT TC - 3'Degenerate primer 2: 5' - GCCGGACTTAGCGAGCA TGTGTAGTACCTTGCCG ATCCCNTSABGNACYTN CTG - 3'Degenerate primer 3: 5' - GCCGGACTTAGCGAGCA TGTGTAGTACCTTGCCG ATCCNGACGARWGANA WGAC - 3'Degenerate primer 4: 5' - GCCGGACTTAGCGAGCA TGTGTAGTACCTTGCCG ATCCTAHATGDAGKACN TAC - 3'Specific primer 1: 5' - GCCGGACTTAGCGAGCA TGTGTAG - 3'Specific primer 2: 5' - CATGTGTAGTACCTTGC CGATCC - 3'Internal primers must be designed with regard to each construct that are to be mapped. They should not overlap but instead cover consecutive stretches of known DNA sequence of the transformed construct. | Biology and Environmental Sciences - Gothenburg University, Biology and Environmental Sciences - Gothenburg University | 1 | 2019 | Oskar Johansson, Adrian Clarke 2019. Genomic mapping of transformed DNA fragments. protocols.io dx.doi.org/10.17504/protocols.io.yq2fvye | 2021-03-29 03:10:10 | |||
|
Measurement of heat production (thermogenesis) in cells using ERthermAC dye_microplate method Resource Report Resource Website |
Chih-Hao Wang, Yu-Hua Tseng, Yu-Hua Tseng | 10.17504/protocols.io.bqprmvm6 | Tseng Lab, Joslin Diabetes Center | Graduate Institute of Biomedical Sciences, China Medical University, Taichung 40402, Taiwan, Graduate Institute of Biomedical Sciences, China Medical University, Taichung 40402, Taiwan, Section on Integrative Physiology and Metabolism, Joslin Diabetes Center, Harvard Medical School, Boston, MA, USA | 1 | 2021 | Chih-Hao Wang, Yu-Hua Tseng, Yu-Hua Tseng 2021. Measurement of heat production (thermogenesis) in cells using ERthermAC dye_microplate method. protocols.io dx.doi.org/10.17504/protocols.io.bqprmvm6 | 2021-03-29 03:10:07 | ||||
|
High-performance fractional order terminal sliding mode control strategy for DC-DC Buck converter Resource Report Resource Website |
JL Wang, D Xu1, H Zhou, AN Bai, W Lu | 10.17504/protocols.io.jtjcnkn | EV | , Teacher, cooperator, cooperator, cooperator | 1 | 2018 | JL Wang, D Xu1, H Zhou, AN Bai, W Lu 2018. High-performance fractional order terminal sliding mode control strategy for DC-DC Buck converter. protocols.io dx.doi.org/10.17504/protocols.io.jtjcnkn | 2021-03-29 03:10:08 | ||||
|
Measuring Wingstroke Amplitude with Strokelitude Resource Report Resource Website |
Björn Brembs | 10.17504/protocols.io.c8mzu5 | Brembs Lab | Björn Brembs lab, Universität Regensburg | http://lab.brembs.net/ | 1 | 2015 | Björn Brembs 2015. Measuring Wingstroke Amplitude with Strokelitude. protocols.io dx.doi.org/10.17504/protocols.io.c8mzu5 | 2021-03-29 03:10:08 | |||
|
RNA Isolation from Plant Tissue Protocol 10: TRIzol LS Reagent Method Resource Report Resource Website |
Eric Carpenter | 10.17504/protocols.io.4rwgv7e | GigaScience Press | Implemented by: Michael Melkonian and Barbara Surek (algae) and Juan Carlos Villarreal (bryophytes)This protocol follows the procedures provided with the TRIzol LS Reagent (Invitrogen). TRIzol LS Reagent is a monophasic solution of phenol and guanidine isothiocyanate that can be used in isolation of total RNA from a wide variety of tissues and organisms, in addition to plants. This protocol was used in the isolation of total RNA from some algae samples (see Supplementary Table 1).This protocol is part of a collection of eighteen protocols used to isolate total RNA from plant tissue. (RNA Isolation from Plant Tissue Collection: https://www.protocols.io/view/rna-isolation-from-plant-tissue-439gyr6) | 1 | 2019 | Eric Carpenter 2019. RNA Isolation from Plant Tissue Protocol 10: TRIzol LS Reagent Method. protocols.io dx.doi.org/10.17504/protocols.io.4rwgv7e | 2021-03-29 03:10:09 | ||||
|
Alternative Splicing Analysis Resource Report Resource Website |
Hansheng Zhao | 10.17504/protocols.io.phndj5e | Zhao H, Gao Z, Wang L, Wang J, Wang S, Fei B, Chen C, Shi C, Liu X, Zhang H, Lou Y, Chen L, Sun H, Zhou X, Wang S, Zhang C, Xu H, Li L, Yang Y, Wei Y, Yang W, Gao Q, Yang H, Zhao S, Jiang Z, Chromosome-level reference genome and alternative splicing atlas of moso bamboo (). GigaScience 7(10). doi: 10.1093/gigascience/giy115 | International Centre for Bamboo and Rattan | https://doi.org/10.1093/gigascience/giy115 | 1 | 2018 | Hansheng Zhao 2018. Alternative Splicing Analysis. protocols.io dx.doi.org/10.17504/protocols.io.phndj5e | 2021-03-29 03:10:09 |
Can't find your Protocol?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. If you want to find a specific protocol and you know the DOI of the protocol already, it's easier to enter a DOI to search. You can refine the search results using Facets on the left side of the search results page. If you are on the table view, you can also search in a specific column by clicking the column title and enter the keywords.
If you still could not find your protocol in the search results, please help us by adding it into the system — it's easy. Create and publish your protocols at Protocols.io.
Welcome to the dkNET Resources search. From here you can search through a compilation of resources used by dkNET and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that dkNET has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on dkNET then you can log in from here to get additional features in dkNET such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into dkNET you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
Email: info_at_ dknet.org
