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Integrated Animals is a virtual database currently indexing available animal strains and mutants from: AGSC (Ambystoma), BCBC (mice), BDSC (flies), European Xenopus Resource Center (frog), The National Xenopus Resource (frog), Xenopus Express (frog), CWRU Cystic Fibrosis Mouse Models (mice), DGGR (flies), FlyBase (flies), IMSR (mice), MGI (mice), MMRRC (mice), NSRRC (pig), RGD (rats), Sperm Stem Cell Libraries for Biological Research (rats), Tetrahymena Stock Center (Tetrahymena), WormBase (worms), XGSC (Xiphophorus), ZFIN (zebrafish), and ZIRC (zebrafish). Note, the IMSR data is linked, but users may need to re-execute the search if the top mouse is not returned properly.
Note: BCBC is no longer in service, so the links may not be functional.
| Organism Name | Proper Citation | Species | Synonyms |
Notes |
Phenotype | Affected Gene | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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SD;DA-Tg(Thy1-APP*)12Dspb Resource Report Resource Website |
RRID:RGD_38599243 | Rattus norvegicus | Mutant human amyloid beta (APP*) combined Thy1 promoter which is specifically expressed in neurons, was induced to ES cells from DA strain rats, and chimera rats obtained from the ES cells. The F1 rats were backcrossed with Crl:CD (SD) strain rats and F3 rats was deposited to NBRP. The expression levels of mutant human APP mRNA are difficult among Lines (12>1>14>6). National BioResource Project for the Rat in Japan | 38599243 | transgenic | Rat Genome Database (RGD) | RGD | Cryopreserved Sperm (as of 2020-09-16) | 38599243 | 2026-09-12 01:25:38 | 0 | |||||
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CD-Tg(RNECO-180E22)424Arno Resource Report Resource Website 1+ mentions |
RRID:RGD_155663366 | Rattus norvegicus | This transgenic model line 424 was made by injecting bacterial artificial chromosome (BAC) RNECO-180E22, into Crl:CD(SD) strain embryos. The BAC clone RNECO-180E22, a kind gift of Helen Skaletsky, is derived from Rattus norvegicus strain SHR chromosome Y. | 155663366 | transgenic | Rat Genome Database (RGD) | RGD | Unknown | 155663366 | 2026-09-12 01:25:41 | 1 | |||||
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CD-Tg(RNECO-180E22)208Arno Resource Report Resource Website 1+ mentions |
RRID:RGD_155663365 | Rattus norvegicus | This transgenic model line 208 was made by injecting bacterial artificial chromosome (BAC) RNECO-180E22, into Crl:CD(SD) strain embryos. The BAC clone RNECO-180E22, a kind gift of Helen Skaletsky, is derived from Rattus norvegicus strain SHR chromosome Y. | 155663365 | transgenic | Rat Genome Database (RGD) | RGD | Unknown | 155663365 | 2026-09-12 01:25:41 | 1 | |||||
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SD-Tg(Prp-DISC1)Uhg Resource Report Resource Website |
RRID:RGD_291492855 | Rattus norvegicus | Transgenic Sprague Dawley rats were generated by injecting the linearized fragment of the CosSHa.tet vector containing the full-length, non-mutant human DISC1 as transgene with the polymorphisms F607 and C704, under the control of the Syrian hamster prion protein promoter, into pronuclei of Sprague Dawley rats. | 291492855 | transgenic | Rat Genome Database (RGD) | RGD | Unknown | 291492855 | 2026-09-12 01:25:40 | 0 | |||||
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SD-Tg(Ddx4-Cas9)SynblRrrc Resource Report Resource Website |
RRID:RGD_155260362 | Rattus norvegicus | rat strain designed to express Cas9 under the control of the rat Ddx4 (Vasa) regulatory elements while also retaining expression of Ddx4. The strategy entailed insertion of a P2A sequence followed by human-codon-optimized Cas9 coding sequences with nuclear localization signals near the C-terminus of the rat Ddx4 (Vasa) gene. Animals express Cas9 in the testis in the spermatogonial layer and in meiosis stages with 4N DNA content. Strain catalyzes high levels of Active Genetic Gene conversion when paired with certain Active Genetic cassettes. ROBUST AND EFFICIENT ACTIVE GENETICS GENE CONVERSION IN THE RAT AND MOUSE Chenyen Lai, Oscar Alvarez, Kristen Read, Don van Fossan,Christopher M Conner, Shannon Xaing-Ru Xu, Dale O. Cowley, Valentino Gantz, David R. Webb, Kurt Jarnagin URL: Doi:10.1101/2022.08.30.505951 URL: Doi:10.1101/2022.08.30.505951 RRRC | 155260362 | transgenic | Rat Genome Database (RGD) | RGD | Unknown | 155260362 | 2026-09-12 01:25:40 | 0 | |||||
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SD-Tg(Sycp1-Cas9-eGFP)SynblRrrc Resource Report Resource Website |
RRID:RGD_155260361 | Rattus norvegicus | This project entailed generation of a novel rat strain in which a P2A-Cas9-T2A-EGFP coding sequence was inserted at the stop codon of the rat Sycp1 gene for co-expression of Cas9 and EGFP under the control of the Sycp1 regulatory elements. Animals express Cas9 in the testis in the spermatogonial layer and in meiosis stages with 4N DNA content. Strain catalyzes high levels of Active Genetic Gene conversion when paired with certain Active Genetic cassettes. ROBUST AND EFFICIENT ACTIVE GENETICS GENE CONVERSION IN THE RAT AND MOUSE Chenyen Lai, Oscar Alvarez, Kristen Read, Don van Fossan,Christopher M Conner, Shannon Xaing-Ru Xu, Dale O. Cowley, Valentino Gantz, David R. Webb, Kurt Jarnagin URL: Doi:10.1101/2022.08.30.505951 from RRRC. | 155260361 | transgenic | Rat Genome Database (RGD) | RGD | Cryopreserved Sperm (as of 2022-10-06) | 155260361 | 2026-09-12 01:25:40 | 0 | |||||
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SD-Tg(Cyp2e1-CYP2E1*-Cas9)SynblRrrc Resource Report Resource Website |
RRID:RGD_155260363 | Rattus norvegicus | rat strain in which the rat Cyp2e1 gene is humanized by insertion of a human CYP2E1 minigene (CYP2E1*) insert at the native start codon. The insert also included a CRISPR/Cas9 gene drive element to enable super-Mendelian inheritance of the modified allele when crossed to a rat expressing Cas9 in the germline. ROBUST AND EFFICIENT ACTIVE GENETICS GENE CONVERSION IN THE RAT AND MOUSE Chenyen Lai, Oscar Alvarez, Kristen Read, Don van Fossan,Christopher M Conner, Shannon Xaing-Ru Xu, Dale O. Cowley, Valentino Gantz, David R. Webb, Kurt Jarnagin URL: Doi:10.1101/2022.08.30.505951 URL: Doi:10.1101/2022.08.30.505951 URL: URL: Doi:10.1101/2022.08.30.505951 RRRC | 155260363 | transgenic | Rat Genome Database (RGD) | RGD | Cryopreserved Sperm (as of 2022-10-06) | 155260363 | 2026-09-12 01:25:40 | 0 | |||||
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SD-Tg(Ddx4-Cas9)Synbl Resource Report Resource Website |
RRID:RGD_155260366 | Rattus norvegicus | rat strain designed to express Cas9 under the control of the rat Ddx4 (Vasa) regulatory elements while also retaining expression of Ddx4. The strategy entailed insertion of a P2A sequence followed by human-codon-optimized Cas9 coding sequences with nuclear localization signals near the C-terminus of the rat Ddx4 (Vasa) gene. Animals express Cas9 in the testis in the spermatogonial layer and in meiosis stages with 4N DNA content. Strain catalyzes high levels of Active Genetic Gene conversion when paired with certain Active Genetic cassettes. ROBUST AND EFFICIENT ACTIVE GENETICS GENE CONVERSION IN THE RAT AND MOUSE Chenyen Lai, Oscar Alvarez, Kristen Read, Don van Fossan,Christopher M Conner, Shannon Xaing-Ru Xu, Dale O. Cowley, Valentino Gantz, David R. Webb, Kurt Jarnagin URL: Doi:10.1101/2022.08.30.505951 URL: Doi:10.1101/2022.08.30.505951 Donated to Rat Resource & Research Center | 155260366 | transgenic | Rat Genome Database (RGD) | RGD | Unknown | 155260366 | 2026-09-12 01:25:40 | 0 | |||||
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SD-Tg(Cyp3a23-3a1-Cyp3A4*-Cas9)Synb Resource Report Resource Website |
RRID:RGD_155260368 | Rattus norvegicus | rat strain in which the rat Cyp3a1 gene (Cyp3a23-3a1, RGD:628626) was inactivated by insertion of a human CYP3A4 minigene (Cyp3A4*) and the linked rat Cyp3a2 locus was simultaneously mutated by CRISPR-mediated indel introduction. Strain contains Indel 8 at the Rat 3A2 locus (55 kb away), The CYP3A4 minigene included a CRISPR/Cas9 gene drive element to enable super-Mendelian inheritance. Strain contains and Active Genetic cassette which encodes a gRNA targeting the Rat 3A1 and 3A2 translation initiation site. ROBUST AND EFFICIENT ACTIVE GENETICS GENE CONVERSION IN THE RAT AND MOUSE Chenyen Lai, Oscar Alvarez, Kristen Read, Don van Fossan,Christopher M Conner, Shannon Xaing-Ru Xu, Dale O. Cowley, Valentino Gantz, David R. Webb, Kurt Jarnagin URL: Doi:10.1101/2022.08.30.505951 URL: Doi:10.1101/2022.08.30.505951 URL: URL: Doi:10.1101/2022.08.30.505951 Donated to Rat Resource & Research Center | 155260368 | transgenic | Rat Genome Database (RGD) | RGD | Cryopreserved Sperm (as of 2022-10-06) | 155260368 | 2026-09-12 01:25:40 | 0 | |||||
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SD-Tg(Cyp2e1-CYP2E1*-Cas9)Synbl Resource Report Resource Website |
RRID:RGD_155260367 | Rattus norvegicus | rat strain in which the rat Cyp2e1 gene is humanized by insertion of a human CYP2E1 minigene (CYP2E1*) insert at the native start codon. The insert also included a CRISPR/Cas9 gene drive element to enable super-Mendelian inheritance of the modified allele when crossed to a rat expressing Cas9 in the germline. ROBUST AND EFFICIENT ACTIVE GENETICS GENE CONVERSION IN THE RAT AND MOUSE Chenyen Lai, Oscar Alvarez, Kristen Read, Don van Fossan,Christopher M Conner, Shannon Xaing-Ru Xu, Dale O. Cowley, Valentino Gantz, David R. Webb, Kurt Jarnagin URL: Doi:10.1101/2022.08.30.505951 URL: Doi:10.1101/2022.08.30.505951 URL: URL: Doi:10.1101/2022.08.30.505951 Donated to Rat Resource & Research Center | 155260367 | transgenic | Rat Genome Database (RGD) | RGD | Cryopreserved Sperm (as of 2022-10-06) | 155260367 | 2026-09-12 01:25:40 | 0 | |||||
|
SD-Tg(MECP2 )Chnsr Resource Report Resource Website |
RRID:RGD_155631285 | Rattus norvegicus | PAC671D9 (AF031078) DNA containing all the exons of human MECP2 was injected to SD embryos to generate MECP2 duplication rat. | 155631285 | transgenic | Rat Genome Database (RGD) | RGD | Unknown | 155631285 | 2026-09-12 01:25:40 | 0 | |||||
|
SD-Tg(Oprm1-icre)1Ottc Resource Report Resource Website |
RRID:RGD_155641245 | Rattus norvegicus | Targeted knock-in adding a T2A-iCre to the Oprm1 (mu opioid receptor) in this cre recombinase reporter SD rat This rat was produced by Optogenetics and Transgenic Technology Core and now cryopreserved at RRRC. | 155641245 | transgenic | Rat Genome Database (RGD) | RGD | Unknown | 155641245 | 2026-09-12 01:25:41 | 0 | |||||
|
CD-Tg(RNECO-180E22)733Arno Resource Report Resource Website |
RRID:RGD_155663367 | Rattus norvegicus | This transgenic model line 733 was made by injecting bacterial artificial chromosome (BAC) RNECO-180E22, into Crl:CD(SD) strain embryos. The BAC clone RNECO-180E22, a kind gift of Helen Skaletsky, is derived from Rattus norvegicus strain SHR chromosome Y. | 155663367 | transgenic | Rat Genome Database (RGD) | RGD | Unknown | 155663367 | 2026-09-12 01:25:41 | 0 | |||||
|
SD-Tg(Acr3-EGFP)Nips Resource Report Resource Website |
RRID:RGD_401799619 | Rattus norvegicus | This transgenic strain was created by intracytoplasmic sperm injection (ICSI) mediated DNA transfer. Linearized Acr3-EGFP plasmid DNA (Nakanishi et al., FEBS Lett. 1999; 0.1 micrograms/ml) is mixed with sperm heads of Slc:SD rats for 2 min. The sperm head is microinjected into ovulated oocytes of Slc:SD rat (RGD ID:12910483) and incubated overnight prior to embryo transfer to pseudopregnant females. Resultant pups are examined for correct gene-targeting by genomic PCR, and maintained by crossing the founder with Slc:SD rat. Section of Mammalian Transgenesis Center for Genetic Analysis of Behavior, National Institute for Physiological Sciences, Okazaki Aichi 444-8787, Japan. or Division of Mammalian Embryology, Center for Stem Cell Biology and Regenerative Medicine, The Institute for Medical Science, The University of Tokyo, Tokyo108-8639, Japan. | 401799619 | transgenic | Rat Genome Database (RGD) | RGD | Cryopreserved Embryo; Cryopreserved Sperm (as of 2023-09-12) | 401799619 | 2026-09-12 01:25:41 | 0 | |||||
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SD-Tg(Myh6-cre)Lizh Resource Report Resource Website |
RRID:RGD_329969882 | Rattus norvegicus | The heart-specific cre expression plasmid (alpha-MHC-Cre) was produced by inserting the cre coding sequence downstream of the a-MHC (Mgh6) promoter in the a-MHC expression vector. The a-MHC-Cre transgenic rat was generated by microinjection of linearized alpha-MHC-Cre plasmid to Sprague Dawley embryos. | 329969882 | transgenic | Rat Genome Database (RGD) | RGD | Unknown | 329969882 | 2026-09-12 01:25:41 | 0 | |||||
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LE-Tg(Drd2-cre)487-3Koba Resource Report Resource Website |
RRID:RGD_329848998 | Rattus norvegicus | This strain is established by injection of modified BAC (cre gene was inserted into the exon 2 of rat Drd2 gene) into Long-Evans rat's fertile eggs. Detailed information of BAC: Drd2, CH230-11B15 from the CHORI-230 Female Brown Norway rat BAC Library (BACPAC Resources Center, Children?s Hospital Oakland Research Institute)" National BioResource Project for the Rat in Japan | 329848998 | transgenic | Rat Genome Database (RGD) | RGD | Cryopreserved Sperm (as of 2023-06-07) | 329848998 | 2026-09-12 01:25:41 | 0 | |||||
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LE-Tg(Drd2-cre)490-9Koba Resource Report Resource Website |
RRID:RGD_329848999 | Rattus norvegicus | This strain is established by injection of modified BAC (cre gene was inserted into the exon 2 of rat Drd2 gene) into Long-Evans rat's fertile eggs. " National BioResource Project for the Rat in Japan | 329848999 | transgenic | Rat Genome Database (RGD) | RGD | Cryopreserved Sperm (as of 2023-06-07) | 329848999 | 2026-09-12 01:25:41 | 0 | |||||
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W-Tg(Dbh-tTA,-cre)5_9Fusa Resource Report Resource Website |
RRID:RGD_598092607 | Rattus norvegicus | This strain was established by a use of the BAC transgenic method with a technical support from the C.B.S.N resource (Dr. Kazuto Kobayashi, Fukushima Medical University, Dr. Yuchio Yanagawa, Gunma University Graduate School of Medicine). This transgenic rat was transported to The Jikei University School of Medicine, and cre recombinase expression was confirmed by crossing it with a reporter rat (NBRP Rat No: 0734). These rats are maintained in The Jikei University School of Medicine. Background strain: Crlj:WI. Transgene: Dbh (dopamine beta-hydroxylase: rat), TetR (E.coli), VP16 protein minimal“F”-type activation domain (Herpes simplex virus), 2A (Thosea asigna virus), cre recombinase (P1 Phage), bGlobin polyA (rabbit), loxP (P1 phage). Detailed method (BAC transgenic method): a rat BAC clone was used (CH230-211J22). Combined mRNA for tTA and cre recombinase sequences is transcribed under the control of Dbh promoter. In translation step, the transcript is cut at the 2A peptide sequence, resulting in a separate protein production of tTA and Cre. National BioResource Project for the Rat in Japan | 598092607 | transgenic | Rat Genome Database (RGD) | RGD | Cryopreserved Sperm (as of 2025-03-28) | 598092607 | 2026-09-12 01:25:42 | 0 | |||||
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W-Tg(Dbh-tTA,-cre)2_7Fusa Resource Report Resource Website |
RRID:RGD_598092605 | Rattus norvegicus | This strain was established by a use of the BAC transgenic method with a technical support from the C.B.S.N resource (Dr. Kazuto Kobayashi, Fukushima Medical University, Dr. Yuchio Yanagawa, Gunma University Graduate School of Medicine). This transgenic rat was transported to The Jikei University School of Medicine, and cre recombinase expression was confirmed by crossing it with a reporter rat (NBRP Rat No: 0734). These rats are maintained in The Jikei University School of Medicine. Background strain: Crlj:WI. Transgene: Dbh (dopamine beta-hydroxylase: rat), TetR (E.coli), VP16 protein minimal“F”-type activation domain (Herpes simplex virus), 2A (Thosea asigna virus), cre recombinase (P1 Phage), bGlobin polyA (rabbit), loxP (P1 phage). Detailed method (BAC transgenic method): a rat BAC clone was used (CH230-211J22). Combined mRNA for tTA and cre recombinase sequences is transcribed under the control of Dbh promoter. In translation step, the transcript is cut at the 2A peptide sequence, resulting in a separate protein production of tTA and Cre. National BioResource Project for the Rat in Japan | 598092605 | transgenic | Rat Genome Database (RGD) | RGD | Cryopreserved Sperm (as of 2025-03-28) | 598092605 | 2026-09-12 01:25:43 | 0 | |||||
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SD-Tg(SNCA)Nuber Resource Report Resource Website |
RRID:RGD_597538592 | Rattus norvegicus | For the generation of transgenic rats, the authors used a 190-kb fused AF163864 PAC/AC097478 BAC clone (Yamakado et al., 2012, PMID:22475625). It contained the entire human SNCA sequence (GenBank AF163864), with 30-kb upstream regulatory promoter sequences and a 45-kb flanking downstream region, cloned into pBACe3.6 vector as described previously. Transgenic rats were obtained by injecting the purified BAC fragment into fertilized Sprague–Dawley oocytes at a concentration of 1.5 µg/ml. A founder line displaying the highest integration number of BAC DNA construct was crossedbred to homozygosity. | 597538592 | transgenic | Rat Genome Database (RGD) | RGD | Unknown | 597538592 | 2026-09-12 01:25:42 | 0 |
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