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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Mouse Brain Library Resource Report Resource Website 10+ mentions |
Mouse Brain Library (RRID:SCR_001112) | MBL | atlas, data or information resource, database, image collection, portal, topical portal, video resource | Collection of high resolution images and databases of brains from many genetically characterized strains of mice with aim to systematically map and characterize genes that modulate architecture of mammalian CNS. Includes detailed information on genomes of many strains of mice. Consists of images from approximately 800 brains and numerical data from just over 8000 mice. You can search MBL by strain, age, sex, body or brain weight. Images of slide collection are available at series of resolutions. Apple's QuickTime Plugin is required to view available MBL Movies. | brain, gene, genome, strain, c57bl/6j, dba/2j, a/j, genetic variant, phenotype, hippocampus, cerebellum, striatum, olfactory bulb, thalamus, neocortex, dorsal nucleus of lateral geniculate body, central nervous system |
is related to: Videoscribbler has parent organization: University of Tennessee Health Science Center; Tennessee; USA is parent organization of: MBL Pivot Collection is parent organization of: Mouse Brain Atlases |
NIMH P20 MH62009 | PMID:10857184 PMID:15043219 |
Restricted | nif-0000-00030 | SCR_001112 | MBL - Mouse Brain Library, Mouse Brain Library, The Mouse Brain Library | 2026-09-03 04:44:17 | 24 | |||||
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MBL Pivot Collection Resource Report Resource Website |
MBL Pivot Collection (RRID:SCR_005506) | MBL Pivot Collection | data or information resource, database, image collection | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 4th, 2023. Mouse brains displayed in the Microsoft Silverlight PivotViewer from the Mouse Brain Library (MBL) which consist of high-resolution images of brains from many genetically characterized strains of mice. PivotViewer makes it easier to interact with massive amounts of data on the web in ways that are powerful, informative, and fun. By visualizing thousands of related items at once, users can see trends and patterns that would be hidden when looking at one item at a time. Because PivotViewer leverages Deep Zoom, it displays full, high-resolution content without long load times, while the animations and natural transitions provide context and prevent users from feeling overwhelmed by large quantities of information. This simple, inviting interaction model encourages exploration and longer audience engagement times, and applies broadly to a variety of content types. | brain, horizontal, coronal | has parent organization: Mouse Brain Library | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_144606 | SCR_005506 | Mouse Brain Library Pivot Collection | 2026-09-03 04:47:58 | 0 | |||||||
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Mouse Brain Atlases Resource Report Resource Website 1+ mentions |
Mouse Brain Atlases (RRID:SCR_007127) | Mouse Brain Atlases | atlas, data or information resource | High-resolution electronic atlases for mouse strains c57bl/6j, a/j, and dba/2j in either coronal or horizontal section. About this Atlas: The anterior-posterior coordinates are taken from an excellent print atlas of a C57BL/6J brain by K. Franklin and G. Paxinos (The Mouse Brain in Stereotaxic Coordinates, Academic Press, San Diego, 1997, ISBN Number 0-12-26607-6; Library of Congress: QL937.F72). The abbreviations we have used to label the sections conform to those in the Franklin-Paxinos atlas. A C57BL/6J mouse brain may contain as many as 75 million neurons, 23 million glial cells, 7 million endothelial cells associated with blood vessels, and 3 to 4 million miscellaneous pial, ependymal, and choroid plexus cells (see data analysis in Williams, 2000). We have not yet counted total cell number in DBA/2J mice, but the counts are probably appreciably lower.The brain and sections were all processed as described in our methods section. The enlarged images have a pixel count of 1865 x 1400 and the resolution is 4.5 microns/pixel for the processed sections.Plans: In the next several years we hope to add several additional atlases of the same sort for other strains of mice. A horizontal C57BL/6J atlas and a DBA/2J coronal atlas were completed by Tony Capra, summer 2000, and additional atlases may be made over the next several years. As describe in the MBL Procedures Section is not hard to make your own strain-specific atlas from the high resolution images in the MBL. | genetics, anatomy, coronal, cerebellum, c57bl/6j, dba/2j, a/j, horizontal, morphology, subcortical, volume | has parent organization: Mouse Brain Library | Human Brain Project ; NIDA ; NSF ; NIMH P20-MH 62009 |
nif-0000-00044 | SCR_007127 | 2026-09-03 05:02:07 | 7 | ||||||||
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Videoscribbler Resource Report Resource Website |
Videoscribbler (RRID:SCR_013607) | data processing software, image processing software, software application, software resource | VideoScribbler is a program that makes it possible to trace directly onto live video. It was developed to provide a way to outline and count cells in a video image. The program displays the live video image in a 640x480 window. Userrs can click and drag the mouse to outline cells, while releasing the mouse button will complete the outline and increment the "Object Count" display at the bottom of the window. | trace, live video, outline cell | is related to: Mouse Brain Library | Public, Free | nif-0000-00351 | SCR_013607 | 2026-09-03 04:58:19 | 0 | |||||||||
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University of Tennessee Health Science Center; Tennessee; USA Resource Report Resource Website 1+ mentions |
University of Tennessee Health Science Center; Tennessee; USA (RRID:SCR_011713) | UTHSC | institution, university |
has parent organization: University of Tennessee; Tennessee; USA is parent organization of: Mouse Brain Library is parent organization of: Chilibot: Gene and Protein relationships from MEDLINE is parent organization of: CTCFBSDB is parent organization of: GeneNetwork is parent organization of: PolymiRTS is parent organization of: GeneInfoViz is parent organization of: Mouse Genome Databases is parent organization of: nsSNPAnalyzer is parent organization of: GeneCup |
SCR_011713 | University of Tennessee Health Science Center, The University of Tennessee Health Science Center | 2026-09-03 05:07:29 | 2 |
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