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Software application that is part of the LINKAGE auxiliary programs (entry from Genetic Analysis Software)
Proper citation: LSP (RRID:SCR_007059) Copy
http://users.ox.ac.uk/~ayoung/gas.html .
Software application for statistical analysis of genetic linkage data, sib-pair analysis, association studies (entry from Genetic Analysis Software)
Proper citation: GAS (RRID:SCR_009184) Copy
Software application (entry from Genetic Analysis Software)
Proper citation: APM (RRID:SCR_009125) Copy
http://watson.hgen.pitt.edu/register/soft_doc.html,
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application that calculates likelihood on pedigrees (entry from Genetic Analysis Software)
Proper citation: VITESSE (RRID:SCR_009089) Copy
http://www-genome.wi.mit.edu/genome_software
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 23,2022. Software application (entry from Genetic Analysis Software)
Proper citation: MAPMAKER/QTL (RRID:SCR_009283) Copy
http://info.med.yale.edu/genetics/kkidd/programs.html
A simple software program for graphical presentation of haplotype block structures, tagSNP selection and SNP variation. (entry from Genetic Analysis Software)
Proper citation: HAPLOT (RRID:SCR_009228) Copy
https://github.com/gaow/genetic-analysis-software/blob/master/pages/LRP.md
Software application that is part of the LINKAGE auxiliary program (entry from Genetic Analysis Software)
Proper citation: LRP (RRID:SCR_009263) Copy
https://github.com/gaow/genetic-analysis-software/blob/master/pages/PREPLINK.md
Software application that is part of the LINKAGE auxiliary program (entry from Genetic Analysis Software)
Proper citation: PREPLINK (RRID:SCR_009335) Copy
http://gaow.github.io/genetic-analysis-software/l/linkage---ceph/
Software application (entry from Genetic Analysis Software)
Proper citation: LINKAGE - CEPH (RRID:SCR_007048) Copy
http://www.ncbi.nlm.nih.gov/CBBresearch/Schaffer/fastlink.html
Software application (entry from Genetic Analysis Software)
Proper citation: FASTLINK (RRID:SCR_009177) Copy
http://www.jurgott.org/linkage/LinkagePC.html
Software application - part of the LINKAGE auxiliary programs (entry from Genetic Analysis Software)
Proper citation: MAKEPED (RRID:SCR_009162) Copy
http://www.broad.mit.edu/ftp/distribution/software/mapmaker3/
Software application (entry from Genetic Analysis Software)
Proper citation: MAPMAKER/EXP (RRID:SCR_009281) Copy
http://www.jurgott.org/linkage/simulate.html
Software program to simulate genotypes in family members for a map of linked markers unlinked to a given affection status locus. the output is ready for analysis with UNKNOWN, ISIM, LSIM, or MSIM of the SLINK package. (entry from Genetic Analysis Software)
Proper citation: SIMULATE (RRID:SCR_009391) Copy
http://csg.sph.umich.edu/boehnke/simlink.php
Software program to estimate the probability (power) of detecting linkage given family history information on a set of identified pedigrees. (entry from Genetic Analysis Software)
Proper citation: SIMLINK (RRID:SCR_009387) Copy
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