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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Ivy Glioblastoma Atlas Project Resource Report Resource Website 100+ mentions |
Ivy Glioblastoma Atlas Project (RRID:SCR_005044) | Ivy GAP | atlas, data or information resource, database, image collection | Platform for exploring the anatomic and genetic basis of glioblastoma at the cellular and molecular levels that includes two interactive databases linked together by de-identified tumor specimen numbers to facilitate comparisons across data modalities: * The open public image database, here, providing in situ hybridization data mapping gene expression across the anatomic structures inherent in glioblastoma, as well as associated histological data suitable for neuropathological examination * A companion database (Ivy GAP Clinical and Genomic Database) offering detailed clinical, genomic, and expression array data sets that are designed to elucidate the pathways involved in glioblastoma development and progression. This database requires registration for access. The hope is that researchers all over the world will mine these data and identify trends, correlations, and interesting leads for further studies with significant translational and clinical outcomes. The Ivy Glioblastoma Atlas Project is a collaborative partnership between the Ben and Catherine Ivy Foundation, the Allen Institute for Brain Science and the Ben and Catherine Ivy Center for Advanced Brain Tumor Treatment. | glioblastoma, in situ hybridization, hematoxylin and eosin stain, brain, tumor, gene expression, anatomic structure, histology, clinical, genomic, expression array, gene, FASEB list | has parent organization: Allen Institute for Brain Science | Brain cancer, Cancer | Ben and Catherine Ivy Foundation | nlx_99161 | SCR_005044 | 2026-09-05 06:25:28 | 158 | |||||||
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Brain Research Institute Resource Report Resource Website |
Brain Research Institute (RRID:SCR_004988) | BRI | data or information resource, graduate program resource, portal, postdoctoral program resource, topical portal, training resource | Portal touching on all aspects of neuroscience from molecules to the mind, from the laboratory bench to the patient's bedside. Members study the normal structure and workings of the nervous system, its development, its cognitive functions, its derangement by disease and injury, and the means of its repair and protection. Projects span traditional disciplinary boundaries, as do graduate and postdoctoral training programs. Its major achievement has been to foster and improve multidisciplinary collaborations which has increasingly permitted the identification of pathogenic mechanisms and the formulation of new therapeutic approaches. | one mind tbi, one mind ptsd, neuroscience, nervous system, genomics, proteomics, magnetic resonance imaging assay, positron emission tomography, biosensor, microelectromechanical system, brain, spinal cord |
has parent organization: University of California at Los Angeles; California; USA is parent organization of: Numerical Fibre Generator is parent organization of: cortex is parent organization of: SOCK is parent organization of: Brain Research Institute Biobank Resources |
Brain disorder, Parkinson's disease, Huntington's disease, Alzheimer's disease, Neurofibromatosis, Stroke, Spinal cord injury, Traumatic brain injury, Post-Traumatic Stress Disorder | nlx_143995 | http://www.bri.ucla.edu/index_02.asp | SCR_004988 | Brain Research Institute UCLA | 2026-09-05 06:25:27 | 0 | ||||||
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Neuron Navigator Resource Report Resource Website |
Neuron Navigator (RRID:SCR_005063) | NNG | analysis service resource, d spatial image, data analysis service, data or information resource, database, production service resource, service resource | Neuron Navigator (NNG) integrates a 3D neuron image database into an easy-to-use visual interface. Via a flexible and user-friendly interface, NNG is designed to help researchers analyze and observe the connectivity within the neural maze and discover possible pathways. With NNG''s 3D neuron image database, researchers can perform volumetric searches using the location of neural terminals, or the occupation of neuron volumes within the 3D brain space. Also, the presence of the neurons under a combination of spatial restrictions can be shown as well. NNG is a result of a multi-discipline collaboration between neuroscientists and computer scientists, and NNG has now been implemented on a coordinated brain space for the Drosophila (fruit fly) brain. Account is required. | image database, connectivity, drosophila, brain, neuron | has parent organization: National Tsing Hua University; Hsinchu; Taiwan | nlx_144057 | SCR_005063 | NNG: Neuron Navigator, NNG: Neuron Navigator - A Database of Drosophila Brain Neurons | 2026-09-05 06:25:28 | 0 | ||||||||
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UMKC Neuroscience Brain Tissue Bank and Research Laboratory Resource Report Resource Website |
UMKC Neuroscience Brain Tissue Bank and Research Laboratory (RRID:SCR_005148) | UMKC Brain Tissue Bank | biomaterial supply resource, brain bank, material resource, tissue bank | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 31, 2016. The UMKC Neuroscience Brain Tissue Bank and Research Laboratory has been established to obtain, process, and distribute human brain tissue to qualified scientists and clinicians dedicated to neuroscience research. No other living organ approaches the human brain in complexity or capacity. Healthy, it astounds and inspires miracles. Diseased, it confounds and diminishes hope. The use of human brain tissue for research will provide insight into the anatomical and neurochemical aspects of diseased and non-diseased brains. While animal models are helpful and necessary in understanding disease, certain disorders can be more efficiently studied using human brain tissue. Also, modern research techniques are often best applied to human tissue. We also need samples of brain tissue that have not been affected by disease. They help us to compare a 'normal' brain with a diseased one. Also, we have a critical need for brain donations from relatives who have genetically inherited disorders. Tissue preparation consists of fresh quick-frozen tissue blocks or coronal slices (nitrogen vapor frozen; custom dissection of specific anatomic regions) or formalin-fixed coronal slices (custom dissection of specific anatomic regions). | brain tissue, brain, tissue, fresh quick-frozen, block, nitrogen vapor frozen, frozen, formalin-fixed, disease, normal, genetically inherited disorder, normal control, matched control, neuroscience, post-mortem, coronal slice |
is listed by: One Mind Biospecimen Bank Listing has parent organization: University of Missouri-Kansas City School of Medicine; Missouri; USA |
Disease, Normal, Genetically inherited disorder, Normal control, Matched control | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_144161 | SCR_005148 | UMKC Neuroscience Brain Tissue Bank Research Laboratory, University of Missouri-Kansas City Neuroscience Brain Tissue Bank & Research Laboratory, UMKC Neuroscience Brain Tissue Bank & Research Laboratory | 2026-09-05 06:25:30 | 0 | ||||||
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Northwestern University Cognitive Neurology and Alzheimers Disease Center Resource Report Resource Website 1+ mentions |
Northwestern University Cognitive Neurology and Alzheimers Disease Center (RRID:SCR_012747) | CNADC, NU CNADC | data or information resource, disease-related portal, funding resource, portal, topical portal, training resource | The Cognitive Neurology and Alzheimer's Disease Center (CNADC) is a multidisciplinary organization dedicated to conducting research to discover how the brain coordinates mental functions such as memory, language, attention, and emotion; transferring the benefits of this research to patients with brain diseases that impair cognitive function; and training researchers and clinicians who want to work in this field. The CNADC's mission is to investigate the neurological basis of cognitive function, to elucidate causes of dementia, and to ensure that the patients and their families are the beneficiaries of resultant discoveries. * Clinical Services: Neurobehavior and Memory Health Clinical Services * Annual Grant Opportunities: Annual Core Pilot Project Funding Opportunities * Research Areas & Faculty: Alzheimer's Disease / Primary Progressive Aphasia / Frontal Dementia, Brain Endowment (Brains are permanently stored, and requests for tissue for research purposes are submitted to Dr. Bigio for review by the Northwestern Alzheimer's Disease Center); Cognitive Brain Mapping Group, Volunteer For A Study * Fellowships: Neuropathology Fellowship, Behavioral Neurology & Neuropsychiatry Fellowship * Training Programs: Mechanisms of Aging and Dementia (M.A.D.) Training Program; Training Program in the Neuroscience of Human Cognition | brain, cognitive neurology, memory, language, attention, emotion, cognitive function, late adult human, alzheimer's disease, cognitive decline, dementia |
has parent organization: Northwestern University Feinberg School of Medicine; Illinois; USA is parent organization of: Northwestern CNADC Tissue Bank / Neuropathology Core |
Alzheimer's disease | NIA | Public | nlx_18263 | SCR_012747 | Cognitive Neurology and Alzheimers Disease Center, Northwestern University Cognitive Neurology and Alzheimer's Disease Center | 2026-09-05 06:27:27 | 4 | |||||
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Alzheimer's Disease Education and Referral Center Resource Report Resource Website 1+ mentions |
Alzheimer's Disease Education and Referral Center (RRID:SCR_012787) | ADEAR | data or information resource, disease-related portal, narrative resource, portal, topical portal, training material | Portal for Alzheimer's disease that compiles, archives and disseminates information about current treatments, diagnostic tools and ongoing research for health professions, people with AD, their families and the public. The Center provides informational services and referrals for AD symptoms, diagnosis and treatment for patients; clinical trial information and literature searches for researchers; training materials and guidelines for caregivers; and Spanish language resources. | alzheimer's disease, brain, clinical trial, dementia, diagnosis, human, literature, news, prevention, publication, research center, risk factor, support, symptom, treatment, cure, late adult human, information, referrals |
has parent organization: National Institute on Aging is parent organization of: AD Clinical Trials Database |
Alzheimer's disease, Aging | NIA | Public | nif-0000-22511 | http://www.nia.nih.gov/Alzheimers/ | SCR_012787 | 2026-09-05 06:27:27 | 3 | |||||
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USC Multimodal Connectivity Database Resource Report Resource Website 10+ mentions |
USC Multimodal Connectivity Database (RRID:SCR_012809) | UMCD | data or information resource, data repository, database, service resource, storage service resource | Web-based repository and analysis site for connectivity matrices that have been derived from neuroimaging data including different imaging modalities, subject groups, and studies. Users can analyze connectivity matrices that have been shared publicly and upload their own matrices to share or analyze privately. | fmri, dti, dsi, mri, eeg, meg, data set, image, computational hosting, connectivity, neuroimaging, data sharing, brain, rendering, diffusion-weighted mri, functional connectivity, graph theory, resting-state fmri, structural connectivity, image display, magnetic resonance, python, rendering, visualization, connectivity matrix, network, brain network, matrix, de-identified, male, female, apoe, child, adult |
is used by: NIF Data Federation is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: MGH-USC Human Connectome Project |
Normal, Lesioned, Attention deficit-hyperactivity disorder, Autism Spectrum Disorder, Obsessive-Compulsive Disorder, BDD, APOE 4/4, APOE 3/4, APOE 3/3, Alzheimer's disease | NRSA ; NIH Blueprint for Neuroscience Research ; NIA F31AG035438-01; NIDA HHSN271200800035C |
PMID:23226127 PMID:20850551 |
The community can contribute to this resource, Some features require an account | nlx_83091 | http://www.nitrc.org/projects/umcd | http://jessebrown.webfactional.com/welcome/default/index | SCR_012809 | UCLA Connectivity Database, UCLA Multimodal Connectivity Database: Web-based brain network analysis and data sharing, UCLA Multimodal Connectivity Database | 2026-09-05 06:27:27 | 26 | ||
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Zebra Finch Expression Brain Atlas Resource Report Resource Website 10+ mentions |
Zebra Finch Expression Brain Atlas (RRID:SCR_012988) | ZEBrA | atlas, data or information resource, database, expression atlas | Expression atlas of in situ hybridization images from large collection of genes expressed in brain of adult male zebra finches. Goal of ZEBrA project is to develop publicly available on-line digital atlas that documents expression of large collection of genes within brain of adult male zebra finches. | gene, expression, brain, in-situ, hybridization, taeniopygia, vocal learning, anatomical, atlas, data set, molecular neuroanatomy, adult, male, gene, image, bird, image, avian | has parent organization: Oregon Health and Science University; Oregon; USA | NIGMS R24 GM092842; NINDS R03 NS059755 |
Free, Freely available | nif-0000-24345, SCR_000641, nlx_152091 | http://ignrhnet.ohsu.edu/finch/songbird/index.php | SCR_012988 | zebra, , Zebra Finch Expression Brain Atlas, atlas, Zebra Finch Brain Atlas, ZEBrA, finch | 2026-09-05 06:27:30 | 42 | |||||
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3D Brain Resource Report Resource Website |
3D Brain (RRID:SCR_013138) | 3D Brain | data or information resource, mobile app, narrative resource, software application, software resource, training material | iPhone and iPad app that provides a good overview of the brain and its structures allowing you to rotate and zoom around 29 interactive structures with your touch screen. Discover how each brain region functions, what happens when it is injured, and how it is involved in mental illness. Each detailed structure comes with information on functions, disorders, brain damage, case studies, and links to modern research. Compatible with iPhone, iPod touch and iPad. Requires iOS 3.0 or later. | neuroanatomy, brain, gross neuroanatomy |
is related to: Genes to Cognition Online has parent organization: Cold Spring Harbor Laboratory |
The Dana Foundation ; Hewlett Foundation |
Free | nlx_152078 | SCR_013138 | 2026-09-05 06:27:32 | 0 | |||||||
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Neuroimaging in Python Resource Report Resource Website 10+ mentions |
Neuroimaging in Python (RRID:SCR_013141) | NIPY, | community building portal, data or information resource, portal, software application, software development environment, software development tool, software resource | Community site to make brain imaging research easier that aims to build software that is clearly written, clearly explained, a good fit for the underlying ideas, and a natural home for collaboration. | brain, imaging, neuroimaging, analysis, python, fmri, fmri analysis, magnetic resonance |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Python Programming Language has parent organization: SourceForge has parent organization: University of California at Berkeley; Berkeley; USA has parent organization: Massachusetts Institute of Technology; Massachusetts; USA; is parent organization of: Dipy is parent organization of: NiLearn is parent organization of: NIPY is parent organization of: NiBabel is parent organization of: Nipype is parent organization of: Nitime |
NIMH 5R01MH081909-02; NIBIB 1R03EB008673-01 |
PMID:21897815 | Revised BSD license | nlx_149365 | http://www.nitrc.org/projects/nipy-community http://www.nitrc.org/projects/nipype | SCR_013141 | NIPY Community | 2026-09-05 06:27:32 | 27 | ||||
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NeMO Analytics Resource Report Resource Website 10+ mentions |
NeMO Analytics (RRID:SCR_018164) | analysis service resource, data analysis service, data or information resource, portal, production service resource, service resource, topical portal | Portal enabling web based visualization and analysis of multi omic data describing cell types in developing and adult brain, powered by gEAR and EpiViz. Release 1 on April 2019 includes single cell and bulk tissue RNAseq, ATACseq, and ChIPseq from fetal human prefrontal cortex, as well as from stem cell models of neural induction. Portal will expand to include multiple regions of developing and adult brain and additional analytical tools. | Visualization, analysis, multi omic data, cell type, developing brain, adult brain, RNAseq, ATACseq, CHIPseq, fetal human prefrontal cortex, stem cell, neural induction, brain, data |
is used by: BICCN is related to: NeMOarchive is related to: BRAIN Initiative is related to: Brainome portal is related to: BRAIN Initiative Cell Atlas Network |
Free, Freely available | SCR_018244 | SCR_018164 | Neuroscience Multi-Omic Analytics | 2026-09-05 06:28:32 | 16 | ||||||||
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Computational Anatomy Toolbox for SPM Resource Report Resource Website 500+ mentions |
Computational Anatomy Toolbox for SPM (RRID:SCR_019184) | CAT | data analysis software, data processing software, software application, software resource, software toolkit | Software toolbox as extension to SPM12 to provide computational anatomy. This covers diverse morphometric methods such as voxel based morphometry, surface based morphometry, deformation based morphometry, and region or label based morphometry. | MRI, neuroimaging, brain, voxel based morphometry, surface based morphometry, deformation based morphometry, label based morphometry, region based morphometry | works with: SPM | Free, Available for download, Freely available | SCR_019184 | CAT12 | 2026-09-05 06:28:47 | 581 | ||||||||
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Stroketool-CT Resource Report Resource Website 1+ mentions |
Stroketool-CT (RRID:SCR_013611) | data processing software, data visualization software, software application, software resource | Stroketool-CT is a user friendly MS-Windows based software system for calculation and visualization of enhanced CT perfusion imaging data sets of the brain. It contains features such as quantitative perfusion using SVD algorithms; DICOM compatibility; rapid calculations of rCBF, MTT, rCBV, TTP,Tmax; and interactive and automatic AIF-detection. | stroke, software, system, calculation, visualization, imaging, brain, functional, perfusion, PWI, diffusion, DWI, magnetic resonance, MRI, tool | Available to the research community | nif-0000-00345 | SCR_013611 | Stroketool-CT | 2026-09-05 06:27:38 | 9 | |||||||||
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AutoAlign Head Resource Report Resource Website 1+ mentions |
AutoAlign Head (RRID:SCR_014245) | alignment software, data processing software, image analysis software, software application, software resource | Software designed to automatically realign brain images for easier cross patient examination regardless of age, disease or head position. It positions and aligns anatomy-related sagittal, coronal and axial slices using anatomical landmarks. | brain, cross patient examination, anatomical landmark, automatic realignment | Pay for product | SCR_014245 | 2026-09-05 06:27:44 | 2 | |||||||||||
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Brain Entropy Mapping Toolbox Resource Report Resource Website 10+ mentions |
Brain Entropy Mapping Toolbox (RRID:SCR_014470) | BENtbx | data processing software, image processing software, software application, software resource, software toolkit | A toolkit for mapping brain entropy using fMRI. It uses several functions from ASLtbx. At its core, the toolkit is a collection of batch scripts that implement a pipeline for processing fMRI data in order to get Sample entropy for each voxel. | brain, entropy, fmri, mapping, software toolkit, image processing software | PMID:24657999 | Acknowledgement required, Register to download application and sample data | SCR_014470 | Brain Entropy Mapping Toolbox: BENtbx | 2026-09-05 06:27:47 | 12 | ||||||||
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BRAINS Imagebank Resource Report Resource Website 10+ mentions |
BRAINS Imagebank (RRID:SCR_014576) | data or information resource, database, image collection | A searchable collection of anonymised images and associated clinical data. It includes normal individuals at all ages (from prenatal to old age). The image bank contains integrated data sets already collected as part of research studies which include control subjects. New data is added as they become available. | database, image collection, brain, normal, control, human, integrated data set | is hosted by: University of Edinburgh; Scotland; United Kingdom | Registration required | SCR_014576 | Brain Images of Normal Subjects (BRAINS) Imagebank, Brain Images of Normal Subjects Imagebank | 2026-09-05 06:27:48 | 12 | |||||||||
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iBRAIN Resource Report Resource Website 1+ mentions |
iBRAIN (RRID:SCR_014691) | group | Brain research group affiliated with the Nanjing University of Aeronautics and Astronautics (NUAA) in China. The main research interests of iBRAIN include developing methods in machine learning, data mining, neural computation, and related areas for decoding brain functions or recognizing brain disease. Research related code and datasets can be found on the main site. | brain, human brain, brain disease, brain research, group, brain research group, machine learning, data mining, neural computation | Brain disease | Public | SCR_014691 | Intelligence BRain Analysis through Images and Networks (iBRAIN), Intelligence BRain Analysis through Images and Networks, Intelligence Brain Analysis Through Images and Networks | 2026-09-05 06:27:50 | 6 | |||||||||
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INCF-Neurobot Resource Report Resource Website 10+ mentions |
INCF-Neurobot (RRID:SCR_017004) | INCF Neurobot | data management software, data processing software, software application, software resource | Software tool for data management in clinical studies to improve care for patients with Traumatic Brain Injury (TBI). Used to search and find study variables with the associated information and export study data for further analysis. | data, management, clinical, study, brain, traumatic, injury |
has parent organization: Karolinska Institute; Stockholm; Sweden has parent organization: International Neuroinformatics Coordinating Facility |
Registration required | SCR_017004 | , International Neuroinformatics Coordinating Facility Neurobot, INCF Neurobot | 2026-09-05 06:28:16 | 17 | ||||||||
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Empenn Resource Report Resource Website |
Empenn (RRID:SCR_017074) | community building portal, data or information resource, disease-related portal, portal, project portal, topical portal | Project between Inria, Inserm, CNRS, and University of Rennes for biomedical image analysis for understanding neurological disease. Used to diagnose, monitor and deliver treatment for mental, neurological and substance use disorders by establishing multidisciplinary team between information sciences and medicine in medical imaging, neuroinformatics and population cohorts. | biomedical, image, analysis, disease, medical, imaging, neuroinformatics, population, cohort, brain, neurological, disorder |
is related to: Anima scripts is related to: VISAGES Research is related to: University of Rennes 1; Rennes; France is related to: Anima |
SCR_017074 | Brain | 2026-09-05 06:28:18 | 0 | ||||||||||
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COsleep Resource Report Resource Website 1+ mentions |
COsleep (RRID:SCR_017053) | cosleep | data analysis software, data processing software, software application, software resource | Software Python tool for sleep EEG analysis. Used for Closed and Open loop in Slow Ocillations, Sleep Stimulation in Auditory or Recording in full PSG using OpenBCI Cyton. | SpiSOP, OpenBCI, sleep, EEG, analysis, electroencephalogram, electrical, activity, brain, wave, pattern, disorder |
is related to: SpiSOP is related to: Python Programming Language |
Free, Available for download, Freely available | http://www.spisop.org/cosleep | SCR_017053 | Closed- and Open-loop Sleep Stimulations with Auditory Stimuli, Closed and Open loop sleep | 2026-09-05 06:28:17 | 1 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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