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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Eagle I Resource Report Resource Website 10+ mentions |
Eagle I (RRID:SCR_013153) | eagle-i, eagle i, eaglei | data or information resource, database | Web application to discover resources available at participating networked universities. This distributed platform for creating and sharing semantically rich data is built around semantic web technologies and follows linked open data principles. | ontology, semantic web, rdf, sparql endpoint, linked open data, distributed platform, protocol |
lists: BWH Partners Tissue and Blood Repository lists: MSU Subzero Science and Engineering Research Core Facility lists: OHSU MRI Support Core Laboratory lists: Penn Cell and Developmental Biology Zebrafish Core lists: Penn Clinical Research Computing Unit lists: Penn Community Outreach Using Health System Informatics Core lists: UPR Medical Mycology Laboratory lists: Vanderbilt Bradykinin Core Laboratory lists: BWH Surgical Planning Laboratory lists: Children's Hospital Informatics Program lists: DF/HCC Health Communication Core lists: DF/HCC Specialized Histopathology Services Core lists: Dartmouth College Clinical Pharmacology Shared Resource Core Facility lists: Dartmouth Geospatial Shared Resource lists: FAMU Drug Discovery Core Facility lists: FAMU Flow cytometry laboratory lists: HMS NERCE FACSCalibur Flow Cytometer Resource lists: Harvard HSCI iPS Cell Core Facility lists: Harvard NeuroDiscovery Center - Biomarker Study lists: Harvard Partners HealthCare Center for Personalized Genetic Medicine Bioinformatics Core Facility lists: Hunter NMR Spectroscopy Facility lists: JSU Environmental Toxicology Core Lab lists: MGH Center for Morphometric Analysis lists: MGH Vector Development and Production Core Facility lists: MSU Magnetic Resonance Core Laboratory lists: Penn Diabetes Research Center Mouse Phenotyping Physiology and Metabolism Core lists: Penn Research Instrumentation Shop lists: Penn Small Animal Imaging Facility: PET/SPECT/CT Sub-Core lists: Penn Translational Biomarker Core lists: UH Manoa Insect Museum lists: UTEP BSL 3 Laboratory lists: UTSA Engineering Core lists: Vanderbilt Flow Cytometry Core Laboratory lists: Vanderbilt Diabetes Research and Training Center Islet Procurement and Analysis Core lists: Vanderbilt X-Ray Photoelectron Spectroscopy Lab lists: Wyss Institute Imaging Core lists: XULA Materials Research - Shared Instrumentation Facilities lists: Hunter Genomic Facility lists: UPR Analysis Resource Center Confocal Microscopy Core Laboratory lists: UPR Conrado F. Asenjo Library lists: UPR Confocal Microscope Facility lists: UPR Department of Environmental Health Core Laboratory lists: HSPH Trace Metals Laboratory lists: Dartmouth Science Division Electronics Shop lists: Arnold Arboretum of Harvard University: Weld Hill Microscopy Lab lists: Arnold Arboretum of Harvard University: Weld Hill Molecular Lab lists: BWH Cell Culture and Microscopy Core lists: Hunter Nanoscale Analytical Facility lists: Dartmouth SYNERGY Clinical Research Unit lists: Dartmouth Shared Instruments Core Laboratory lists: Vanderbilt Energy Balance Core Laboratory lists: BWH Circulating Tumor Cell Core lists: University of Pennsylvania School of Medicine Penn Diabetes Research Center Pancreatic Islet Cell Biology Core Facility lists: HSPH Molecular Analysis Facility lists: HSPH Organic Chemistry Laboratory lists: Boston Area Diabetes Endocrinology Research Center Metabolic Physiology and Energy Balance Core Facility lists: Harvard FAS Magnetic Resonance Laboratory lists: Howard Flow Cytometry Core lists: CAU CCRTD-Histology Core lists: Penn Laser Confocal Microscope Core lists: Vanderbilt Free Radicals in Medicine Core lists: UAF Alaska Stable Isotope Facility lists: CDU Cancer Research and Training Core Facility lists: CHB Ultrasound lists: Penn Automated Claims and Medical Record Databases lists: Arnold Arboretum of Harvard University: Weld Hill Growth Facilities lists: BIDMC Biomedical Research Informatics Core Laboratory lists: BIDMC CVVR Flow Cytometry Core lists: BIDMC Cardiac Physiology Core Laboratory lists: BIDMC Clinical Research Coordinator Core Laboratory lists: BIDMC DNA Sequencing Core lists: HMS Flow Cytometry Facility lists: Beth Israel Deaconess Medical Center Genomics Proteomics Bioinformatics and Systems Biology Center lists: BIDMC Longwood Small Animal Imaging Core Facility lists: CHB Cellular Imaging Core lists: BIDMC Mass Spectrometry Core lists: BIDMC Multi-Gene Transcriptional Profiling Core lists: BIDMC Preclinical Murine Pharmacogenetics Core lists: BIDMC Real-Time PCR Core lists: BIDMC Transgenic Core Facility lists: BIDMC X-ray Crystallography Core lists: BIDMC eData Collection Core lists: BWH Biostatistics Center lists: BWH CytoGenomics lists: BWH DNA Sequencing Core lists: BWH Flow Cytometry Core Laboratory lists: BWH Sleep and EEG Core lists: BWH Specialty Assay Research Core Laboratory lists: CAU CCRTD-Proteomics lists: BWH Transgenic Core Facility lists: BWH-BRI Antibody Core Facility lists: Broad Genetic Analysis Platform lists: CAU CCRTD-Cell Biology lists: CAU CCRTD-Molecular Biology lists: HSDM Micro CT Core lists: CAU CCRTD-Structural Biology lists: Clark Atlanta University Collaborative Center for Cancer Genomics and Bioinformatics Core Facility lists: CCNY Fluorescence Activated Cell Sorting lists: CCNY Microscopy Facility lists: CCNY RCMI Core Facility lists: CDU AXIS Biomedical Informatics function lists: CDU Exercise Physiology Laboratory lists: CDU Metabolic and Oxidative Stress Core Laboratory lists: CDU Morphometry and Stereology Laboratory lists: CDU Vivarium lists: CHB Advanced Fetal Care Center lists: CHB Cell Sorter Core lists: CHB Transgenic Core Laboratory lists: CHB Cellular Neuroscience Core Laboratory lists: CHB Computational Radiology Laboratory lists: CHB Computed Tomography Core Imaging Facilities lists: CHB Diagnostic Radiology Core lists: CHB Epithelial Cell Biology Core lists: Massachusetts Host-Microbiome Center lists: CHB Magnetic Resonance Imaging lists: CHB Molecular Genetics Core Facility lists: CHB Molecular and Cellular Biochemistry Core lists: CHB Nuclear Medicine and Molecular Imaging lists: CHB Radiopharmaceutical Chemistry Laboratory lists: CHB Small Animal Imaging Core Laboratory lists: CHOP Biostatistics and Data Management Core lists: CHOP CTRC Behavioral Neurosciences Core lists: CHOP CTRC Cardiovascular Imaging Core lists: CHOP CTRC Nutrition Core Nutrition Assessment lists: CHOP CTRC Ophthalmology Core lists: CHOP Clinical Trials Office lists: CHOP Human Embryonic stem cell/induced pluripotent stem cell Core lists: CHOP Nucleic Acid/Protein Core lists: CHOP Pathology Core Laboratories lists: DF/HCC Biostatistics Core Facility lists: DF/HCC Cancer Pharmacology Core lists: Dana Farber and Harvard Cancer Center Cancer Proteomics Center lists: DF/HCC Cell Manipulation Core Facility lists: DF/HCC Community Practice Research Core lists: DF/HCC High-Throughput Polymorphism Detection Core lists: Dartmouth Department of Physics: Apparatus Shop Core Laboratory lists: DF/HCC Monoclonal Antibody Core lists: DF/HCC Pathology Specimen Locator lists: DF/HCC Rodent Histopathology Core Facility lists: DF/HCC Tissue Microarray and Imaging Core Facility lists: DF/HCC Tumor Imaging Metrics Core Facility lists: DFCI Animal Resources Facility lists: DFCI Biohazard Containment Core Facility lists: DFCI Biospecimen Repository Core Facility lists: DFCI Blais Proteomics Center lists: DFCI Clinical Research Laboratory lists: DFCI Survey and Data Management Core lists: DFCI Flow Cytometry Core Facility lists: DFCI Medical Arts Core Facility lists: DFCI Microarray Core Facility lists: Dana-Farber Cancer Institute Molecular Biology Core Facility lists: DFCI RNA Interference Screening Facility lists: DFCI Shannon McCormack Advanced Molecular Diagnostics Laboratory lists: DartMouse - Speed Congenics lists: Dartmouth-Hitchcock Bioinformatics Shared Resource lists: Dartmouth Biomedical NMR Research Center lists: Dartmouth Biostatistics Shared Resource lists: Dartmouth Cigarette Smoke Exposure Analysis Laboratory lists: Dartmouth Electron Microscope Facility lists: Dartmouth Genomics Shared Resource lists: Dartmouth Institute for Health Policy and Clinical Practice: Data and Analytic Core lists: Dartmouth Media Research Lab Shared Resource lists: Dartmouth Molecular Biology Shared Resource lists: Dartmouth Multi-Photon Imaging lists: Dartmouth SYNERGY: Recruitment and Retention Core lists: Dartmouth SYNERGY: Research Design and Epidemiology Core lists: Dartmouth SYNERGY: Biomedical Informatics Core lists: Dartmouth SYNERGY: Bioregistry lists: Dartmouth SYNERGY: Biostatistics Consultation Core lists: Dartmouth SYNERGY: Ethics Consultation Core lists: Dartmouth Trace Element Analysis Core Facility lists: Dartmouth Translational Research Animal Core lists: FAMU Animal care facility lists: FAMU Molecular biology research laboratory lists: FAMU Neurodegeneration laboratory lists: FAMU Proteomics Laboratory lists: Forsyth Institute Bioinformatics Core Facility lists: Forsyth Biostatistics Core Facility lists: Forsyth Institute Flow Cytometry Core Facility lists: HSPH Inorganic Chemistry Laboratory lists: Forsyth Human Microbe Identification Microarray Core lists: Forsyth Imaging Services Core Facility lists: Forsyth Micro Computed Tomography lists: Forsyth Mineralized Tissue Analysis Core Facility lists: HMS BADERC Flow Cytometry Core lists: HMS Drosophila RNAi Screening Center lists: HMS East Quad NMR Core Facility lists: HMS Genetically Modified NOD Mouse Core Facility lists: HMS Human Sample Procurement Core Facility lists: Harvard Medical School ICCB-Longwood Screening Core Facility lists: HMS Image and Data Analysis Core lists: HMS Microbiology and Immunobiology Biological Chemistry Mass Spec Facility lists: HMS Microfluidics Core Facility lists: HMS Molecular Electron Microscopy Facility lists: HMS NERCE Biomolecule Production Core Laboratory lists: HMS NERCE Confocal Microscope Resource lists: HMS NERCE Live-cell Imaging Core lists: HMS NERCE Microbiology and Animal Resources Core lists: HMS Nikon Imaging Center lists: HMS SBGrid Core lists: HMS Systems Biology Quad Machine Shop lists: HMS Taplin Mass Spectrometry Core Facility lists: HMS West Quad Computing Group lists: HSCI Humanized Neonatal Mouse Center lists: HSCI and BIDMC Flow Cytometry Core Facility lists: HSPH Biological Analysis Service Facility lists: HSPH Biomedical Imaging Facility lists: HSPH Electron Microscopy Facility lists: HSPH Environmental Genomics Service Facility lists: HSPH Environmental Microbiology Lab lists: Harvard School of Public Health Environmental Statistics and Bioinformatics Core Facility lists: HSPH Exposure and Environmental Analysis Service lists: HSPH Flow Cytometry Facility lists: Harvard Bioinformatics Core at Joslin Diabetes Center lists: Harvard CNS Imaging and Analysis Facility lists: Harvard CNS NNIN/C Computational Facility lists: MSU Paleohistology Core Laboratory lists: Harvard CNS Nanofabrication Facility lists: Harvard CNS Nanomaterial Facility lists: Harvard Center for Biological Imaging lists: Harvard Digestive Diseases Center Biomedical CORE B: Microscopy and Histopathology lists: Harvard FAS Bauer Core: Mass Spectrometry and Proteomics Core Laboratory lists: Harvard FAS Center for Brain Science - Electron Microscopy Core Facility lists: Harvard PCMM Flow and Imaging Cytometry Resource lists: Harvard FAS Center for Brain Science - Imaging Core Facility lists: Harvard FAS Center for Brain Science - Neuroengineering Core Facility lists: Harvard FAS Center for Brain Science - Neuroimaging Core Facility lists: Harvard FAS Center for Crystallographic Studies lists: Harvard FAS Research Computing Core lists: Harvard FAS Small Molecule Mass Spectrometry Facility lists: Harvard PCPGM Genotyping Facility lists: Harvard Forsyth Center for Clinical and Translational Research lists: Harvard Gene Therapy Initiative Core lists: Harvard Genome Modification Facility Harvard University lists: Harvard NeuroDiscovery Center - Biostatistics Consultation lists: UCC Common Instrumentation Area and Services lists: Harvard NeuroDiscovery Center - Cell-based Assays Core lists: Harvard PCMM Optical Microscopy Core lists: Harvard PCPGM Biorepository for Medical Discovery lists: Harvard PCPGM Biosample Services Facility lists: Howard Imaging Core Facility: Molecular Imaging Laboratory lists: Harvard PCPGM DNA Sequencing Facility lists: Harvard PCPGM Microarray Facility lists: Harvard Partners Research Computing Core lists: Howard Biobehavioral Core Laboratory lists: Howard Biostatistics Core lists: Howard University Center for Computational Biology and Bioinformatics Core Facility lists: Howard Molecular Genetics Core lists: Penn/CHOP CTRC Informatics Services Core lists: Howard Nanoscale Science and Engineering Facility lists: Howard RCMI Proteomics Facility lists: Hunter Bio-Imaging Facility lists: Hunter Flow Cytometry Facility lists: Hunter X-ray Diffraction Facility lists: Joslin Diabetes Center Advanced Genomics and Genetics Core Facility lists: Joslin Diabetes Center Advanced Microscopy Core Facility lists: Joslin Diabetes Center Animal Physiology Core Facility lists: JDC Computer Resource lists: Joslin Diabetes Center Flow Cytometry Core Facility lists: JDC Genetics Core lists: JDC Media Core lists: Joslin Diabets Center Proteomics Core Facility lists: JDC Specialized Assay Core lists: JSU Analytical Core Laboratory lists: JSU Animal Core Facility lists: MGH Flow Cytometry Core Facility lists: JSU BSU-RCMI Biostatistics Core Laboratory lists: JSU Cellomics and Toxicogenomics Research Core Laboratory lists: Jacksonville State University Center for Bioinformatics and Computational Biology lists: JSU Computational Modeling Core Laboratory lists: JSU Electron Microscope Core Laboratory lists: JSU Molecular Magnetic Resonance Core Laboratory lists: LCRC Proteomics Core Facility lists: LCRC Biospecimen Core lists: JSU Molecular and Cellular Biology Core Laboratory lists: JSU RCMI Translational Research Data Coordinating Center lists: JSU Remote Sensing Core Laboratory lists: JSU Visualization Laboratory lists: MGH CCIB DNA Synthesis Core lists: Jackson Heart Study lists: LCRC Adult Stem Cell Core lists: LCRC Cell Analysis and Immunology Core Facility lists: LCRC Genomics Core Facility lists: LCRC Microarray Core lists: LCRC Morphology and Imaging Core lists: Layton Aging and Alzheimers Disease Center Education Core lists: Layton Alzheimers Disease Center Biomarkers and Genetics Core Lab lists: Layton Alzheimers Disease Center Clinical Core lists: MGH Biostatistics Center lists: MGH CCIB Automation Core lists: MGH CCIB DNA Sequencing Core lists: MGH CHGR Chromosome Substitution Strain Resource lists: MGH CHGR Clinical Genetic Research Facility lists: MGH CHGR DNA and Tissue Culture Resource lists: MGH CHGR Genotyping Resource lists: MGH Cell Tissue and Organ Resource Core lists: MGH Confocal Microscope Core lists: Puerto Rico Clinical and Translational Research Consortium Core Laboratory lists: MGH HSCI-CRM Flow Cytometry Core Facility lists: MGH High Resolution Peripheral Quantitative Computed Tomography Core Facility lists: MGH Mouse Imaging Program lists: MGH Musculoskeletal Imaging Research Core lists: MGH PET Core lists: MGH PMB Microscopy Core lists: MSM DNA Sequencing Laboratory lists: MSM Gene Variation Core Laboratory lists: MGH Recombinant Protein Expression and Purification Core lists: MGH Transgenic and Gene Targeting Facility lists: MSM Analytical Chemistry and Protein Profiling Core lists: Morehouse School of Medicine Biomedical Informatics Unit lists: MSM Center of Laboratory Animal Resources lists: MSU Animal Resource Center lists: Montana State University Bioinformatics Core Facility lists: MSU FACS Core Laboratory lists: Montana State University Functional Genomics Core Facility lists: MSU Imaging and Chemical Analysis Core Laboratory lists: MSU Large animal BSL-2 lists: MSU Metabolomics Core Facility lists: MSU Microscopy Core Facility lists: MSU Proteomics Core Laboratory lists: MSU Research Computing Group lists: MSU Transmission Electron Microscopy Core Laboratory lists: MSU X-ray Crystallography Core Laboratory lists: McLean Translational Imaging Laboratory lists: Meharry Endocrine core lists: Meharry Flow Cytometry and BSL3 Core lists: OHSU Investigator Support and Integration Services lists: Meharry Human Tissue Acquistion and Pathology Core lists: Meharry Molecular Biology Core Facility lists: Meharry Morphology Core lists: Monell Behavioral and Physiological Phenotyping Core lists: Monell Chemosensory Receptor Signaling Core lists: Monell Genotyping and DNA/RNA Analysis Core lists: Monell Histology and Cellular Localization Core lists: OHSU Advanced Computing Center Core Facility lists: OHSU Advanced Imaging Research Center Core Facility lists: OHSU Advanced Light Microscopy Core Facility lists: OHSU Assisted Reproductive Technologies and Embryonic Stem Cell Laboratory lists: OHSU Bioanalytical Shared Resource Pharmacokinetics Core Facility lists: OHSU Biochemical Genetics Laboratory lists: Oregon Clinical and Translational Research Institute Biomedical Informatics Program lists: OHSU Biomedical Informatics Shared Resource lists: OHSU Clinical Cytogenetics Laboratory lists: OHSU DNA Services Core Facility lists: Oregon Health and Science University Multiscale Microscopy Core Facility lists: Puerto Rico Clinical and Translational Research Consortium Nursing Services lists: OHSU Electronics and Instrumentation Design Core Resource lists: OHSU Endocrine Technology Support Core Laboratory lists: OHSU Gene Profiling Shared Resource Core Facility lists: OHSU Lipid-Atherosclerosis Laboratory lists: OHSU Histopathology Shared Resource Core Facility lists: OHSU Imaging and Morphology Support Core Laboratory lists: OHSU Immuno Electron Microscopy Core lists: OHSU Immunology Support Core Cellular Immunology Unit lists: OHSU Immunology Support Core Flow Cytometry Unit lists: OHSU In Vivo Optical Imaging Center lists: OHSU Massively Parallel Sequencing Shared Resource Core Facility lists: OHSU Methamphetamine Abuse Research Center Animal Core Component lists: OHSU Molecular and Cellular Biology Core Laboratory lists: OHSU Monoclonal Antibody Core Laboratory lists: OHSU Neuropathology Core lists: OHSU Nuclear Magnetic Resonance Core Facility lists: Penn Mass Spectrometry Molecular Profiling Core lists: OHSU Proteomics Shared Resource Core Facility lists: OHSU Research Cytogenetics Core Laboratory lists: OHSU Animal Model Support Core Facility lists: Oregon Clinical and Translational Research Institute Bionutrition Unit lists: OHSU Oregon Clinical and Translational Research Center Core Facility lists: Oregon Stem Cell Center Monoclonal Antibody Core lists: Penn BioMechanics Core Facility lists: Penn Biological Chemistry Resource Center lists: Penn Cancer Histology Core lists: Penn Cell Center Services Facility lists: Penn Cell Center Stockroom lists: Penn Cell and Developmental Biology Microscopy Core lists: Penn Chemistry NMR Facility lists: Penn Clinical Cell and Vaccine Production Facility lists: Penn Community Engagement and Research Core lists: Penn/CHOP CTRC Bionutrition Research Core Dietary Assessment lists: Penn Electron Microscopy Resource Laboratory lists: Penn Flow Cytometry and Cell Sorting Resource Laboratory lists: Penn Investigational Drug Service lists: Penn Gene Targeting Service lists: University of Pennsylvania Molecular Profiling Facility lists: Penn High-Throughput Sequencing Facility lists: University of Pennsylvania High-performance Computing lists: Penn Histology and Gene Expression Core lists: Penn Human Immunology Core lists: Penn Interventional Radiology Animal Catheter Lab lists: Penn Mass Spectrometry Facility lists: University of Pennsylvania Molecular Profiling Facility Bioinformatics lists: Penn NBIC Probe Facility lists: Penn Neurobehavior Testing Core lists: Penn Next-Generation Sequencing Core lists: Penn Proteomics and Systems Biology Core lists: Penn Diabetes Research Center Radioimmunoassay and Biomarkers Core Facility lists: Penn Regional Nanotechnology Facility lists: Penn Small Animal Imaging Facility lists: Penn Small Animal Imaging Facility: MRI/MRS Sub-Core lists: Penn Small Animal Imaging Facility: Optical/Bioluminescence Sub-Core lists: Penn Small Animal Imaging Facility: Ultrasound Sub-Core lists: Pennsylvania University Perelman School of Medicine Stem Cell and Xenograft Core Facility lists: Penn Diabetes Research Center Transgenic and Chimeric Mouse Core Facility lists: UH Manoa RCMI Magnetic Resonance Image Processing Core lists: University of Pennsylvania Center for Molecular Therapy for Cystic Fibrosis Vector Core Facility lists: Penn/CHOP CTRC Research Nurse Core lists: Penn/CHOP CTRC Sleep Core lists: UH Manoa RCMI Microarray Core Facility lists: Penn/CHOP CTRC Study Design and Biostatistics Core lists: Penn/CHOP CTRC Translational Core Laboratories lists: Puerto Rico Clinical and Translational Research Consortium Patients Coordinator Services lists: Penn/CHOP Office of Human Subject Recruitment and Protection lists: Ponce School of Medicine and Health Sciences AIDS Research Infrastructure Core lists: Ponce School of Medicine and Health Sciences Behavioral Core Facility lists: Ponce School of Medicine and Health Sciences Molecular Biology Core Laboratory lists: UH Manoa Microscopy and Imaging Core lists: Proteomics Center at Childrens Hospital Boston lists: Puerto Rico Clinical and Translational Research Consortium Biostatistic Core Laboratory lists: Puerto Rico Clinical and Translational Research Consortium Research Subject Advocate lists: Ragon Institute Biostatistics Core lists: Ragon Institute Imaging Core Flow Cytometry lists: UAF Animal Quarters Core Laboratory lists: Ragon Institute Imaging Core Microscopy lists: SERI Flow Cytometry Core Facility lists: TSU Biosensor Biomarker and Environmental Toxicology Core Facility lists: TSU Environmental Research and Technology Transfer Center lists: TSU Molecular Biology Core Laboratory lists: Tuskegee Center for Biomedical Research - Digital Imaging lists: Tuskegee Center for Biomedical Research Shared Instrumentation Core lists: Tuskegee University Computational Biology and Bioinformatics - Biomedical Information Management Services lists: UAF Community Engagement and Clinical Support Core lists: UAF DNA Core Laboratory lists: UAF Epidemiology and Biostatistics Core Laboratory lists: UAF Nutrition and Physical Activity Core lists: UAF Optical and Tissue Culture Core lists: UCC Behavioral Testing Facility lists: UCC Biomedical Proteomic Facility lists: UCC Data Management and Statistical Research Support Unit lists: UCC HIV and Substance of Abuse Laboratory Core lists: UCC Immunocytochemistry Laboratory lists: UCC Neuronal Glia Culture Facility lists: UCC Optical Imaging Facility lists: UCC Protein and Nucleic Acid Core Facility lists: UCC Transmission Electron Microscopy Laboratory lists: UH Manoa NMR Lab lists: UH Manoa Analytical Biochemistry Shared Resource lists: UH Manoa Biological Electron Microscope Facility lists: UH Manoa Biostatistics Shared Resources lists: University of Hawaii at Manoa Centers of Biomedical Research Excellence Bioinformatics Core Facility lists: UH Manoa COBRE Genomics Core lists: UH Manoa RCMI Molecular Pathology Core lists: UH Manoa COBRE Mouse Phenotyping Core lists: UH Manoa COBRE Transgenic Core lists: UH Manoa HURL Submersible Facility lists: University of Hawaii at Manoa INBRE Bioinformatics Core Facility lists: University of Hawaii at Manoa Informatics Shared Resource lists: UH Manoa Laboratory Support Shared Resources lists: UH Manoa Nutrition Support Shared Resource lists: UH Manoa PBRC Computer Network Support Facility lists: UH Manoa Pathology Shared Resources lists: UH Manoa RCMI Biostatistics and Data Management Facility lists: UH Manoa RCMI Histology and Imaging Core Facility lists: UH Manoa RCMI Pathogen Reference and Reagent Core lists: UPR Animal Resources Center lists: UH Manoa SOEST Engineering Support Facility lists: UH Manoa Sequencing Facility lists: UPR AABRE Program: Functional Genomics Research Center lists: UPR AABRE Program: Human Genetics Center lists: UPR AABRE Program: Protein Mass Spectrometry Facility lists: UPR AABRE Program: Sequencing and Genotyping Facility lists: University of Puerto Rico Biomedical Informatics Research Core lists: UPR Cayo Santiago Caribbean Primate Research Center lists: UPR Center for Drug Information and Research lists: UPR Center for Genomics in Health Disparities and Rare Disorders lists: UPR Center for Information Technologies and Telecommunications lists: UPR Central Electron Microscopy Unit lists: UPR Flow Cytometry Unit lists: UPR Infectious and Global Diseases Program lists: UPR MBRS-SCORE Research Facility lists: UPR Macromolecular X-ray Crystallography Core Facility lists: UPR Maternal Infant Study Center lists: UPR Pharmaceutical Science Research Support Unit lists: UPR RCMI Program Shared Instrumentation Laboratories lists: UPR RCMI Translational Proteomics Center lists: UPR Sabana Seca Field Station Caribbean Primate Research Center lists: UPR Translational Neurosciences Program lists: UPR Virology Laboratory lists: University of Texas El Paso Analytical Cytology Core Facility lists: University of Texas El Paso Bioinformatics Computing Laboratory lists: UTEP Biomolecule Analysis Core Facility lists: UTEP Cell Culture and High Throughput Screening Core Facility lists: UTEP DNA Analysis Core Facility lists: UTEP Statistical Consulting Laboratory lists: UTSA Biophysics Facility lists: UTSA Cellular and Tissue Engineering Laboratory lists: UTSA Computational Biology Initiative lists: UTSA Kleberg Advanced Microscopy Laboratory lists: UTSA RCMI Computational Systems Biology Core lists: UTSA RCMI Nanotechnology and Human Health Core lists: UTSA SNRP Image Analysis Core lists: UTSA SNRP Neurostatistics Core lists: UTSA X-ray Crystallography Laboratory lists: VANTAGE lists: VICC Research Informatics lists: Vanderbilt Antibody and Protein Resource lists: Vanderbilt Automation and Informatics Core lists: Vanderbilt Biomolecular NMR Facility lists: Vanderbilt Biophysical Instrumentation Core Facility lists: Vanderbilt Biospecimen Shared Resource lists: Vanderbilt Biostatistics Collaboration Center lists: Vanderbilt Cardiovascular Translational and Clinical Research Core lists: Vanderbilt Diabetes Research and Training Center Cell Imaging Shared Resource Core Facility lists: Vanderbilt Center for Molecular Neuroscience Cores lists: Vanderbilt Chemical Synthesis Core Laboratory lists: Vanderbilt Clinical Research Center lists: Vanderbilt Clinical Trials Center lists: Vanderbilt Clinical Trials Shared Resource lists: Vanderbilt University Center for Human Genetics Research Computational Genomics Core lists: Vanderbilt Cooperative Human Tissue Network lists: Vanderbilt DNA Databank lists: Vanderbilt DNA Resources Core lists: Vanderbilt Eicosanoid Core Laboratory lists: Vanderbilt Genetic Studies Ascertainment Core lists: Vanderbilt High Throughput Screening Facility lists: Vanderbilt Diabetes Research and Training Center Hormone Assay and Analytical Services Core Facility lists: Vanderbilt Human Immunology Core Laboratory lists: Vanderbilt Innovative Translational Research Shared Resource lists: Vanderbilt Institute for Integrative Biosystems Research and Education Automated Biosystems Core Laboratory lists: Vanderbilt Institute for Integrative Biosystems Research and Education Microfabrication Core lists: Vanderbilt Institute of Nanoscale Science and Engineering lists: Vanderbilt Lipidomics Core Laboratory lists: Vanderbilt Mass Spectrometry Core Lab lists: Vanderbilt Mass Spectrometry Research Center Proteomics Laboratory lists: Vanderbilt Diabetes Research and Training Center Vanderbilt Diet Body Composition and Metabolism Core Facility lists: Vanderbilt Mouse Kidney Histology and Morphometry Core lists: Vanderbilt Mouse Kidney Physiology Core Lab lists: Vanderbilt Neurochemistry Core Laboratory lists: Wistar Flow Cytometry Core Facility lists: Vanderbilt Rat Neurobehavioral Laboratory lists: Vanderbilt Sleep Research Core lists: Vanderbilt Survey Research Shared Resource lists: Vanderbilt Tissue Core Laboratory lists: Vanderbilt Transgenic Mouse/Embryonic Stem Cell Shared Resource lists: Vanderbilt Translational Pathology Shared Resource lists: Vanderbilt Zebrafish Aquatic Facility lists: Wistar Bioinformatics Core Facility lists: Wistar Genomics Core Facility lists: Wistar Histotechnology Core Facility lists: Wistar Imaging Core Facility lists: Wistar Molecular Screening Facility lists: XULA Major Instrumentation Core lists: Wistar Protein Expression Facility lists: Wistar Proteomics and Metabolomics Core Facility lists: Wyss Institute Machine Shop / 3D Prototyping Core lists: Wyss Institute Materials Characterization Core lists: XULA Animal Care Facility lists: XULA Center for Nanomedicine and Drug Delivery lists: XULA RCMI Cell and Molecular Biology Core lists: XULA RCMI Molecular Structure and Modeling Core lists: Harvard FAS Bauer Core Laboratory lists: BWH Research Imaging Core lists: Penn Induced Pluripotent Stem Cell Core Facility lists: HNDC Enhanced NeuroImaging Core lists: University of Pennsylvania Genomics Analysis Core lists: Meharry Proteomics Core lists: Meharry Microarray and Bioinformatics Core lists: Dartmouth DartLab lists: MGH NextGen Sequencing Core lists: Joslin Diabetes Center Islet Isolation Core lists: MGH Psychiatric and Neurodevelopmental Genetics Unit Core Lab lists: HMS Research Imaging Solutions lists: Harvard SERI Graphic Services Core lists: DFCI Confocal and Light Microscopy Core Facility lists: BWH Specimen Bank lists: MGH Martinos Center for Biomedical Imaging Core Facility lists: HNDC NeuroBehavior Laboratory Core lists: Harvard Chan Bioinformatics Core lists: HNDC Advanced Tissue Resource Center lists: DF/HCC DNA Resource Core lists: HNDC Drug Discovery in Neurodegeneration lists: DFCI Center for Cancer Computational Biology lists: HMS Systems Biology Flow Cytometry Facility lists: OHSU Molecular Virology Support Core is listed by: FORCE11 is related to: CTSAconnect is related to: Clinical and Translational Science Awards Consortium has parent organization: Harvard University; Cambridge; United States has parent organization: Oregon Health and Science University; Oregon; USA is parent organization of: eagle-i research resource ontology |
ARRA ; NCRR U24 RR029825 |
PMID:22434835 | Available to external user, The community can contribute to this resource | r3d100011564, nlx_143592 | https://www.eagle-i.org/, https://www.force11.org/node/4661 | SCR_013153 | 2026-09-05 06:32:04 | 10 | |||||
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VALiDATe29 Squirrel Monkey Brain Atlas Resource Report Resource Website 1+ mentions |
VALiDATe29 Squirrel Monkey Brain Atlas (RRID:SCR_015542) | atlas, data or information resource | Atlas was created from MRI scans of squirrel monkey brains. The atlas is currently comprised of multiple anatomical templates, diffusion MRI templates, and ex vivo templates. In addition, the templates are combined with histologically defined cortical labels, and diffusion tractography defined white matter labels. | squirrel brain, squirrel monkey brain, squirrel brain atlas, squirrel mri | has parent organization: Vanderbilt University; Tennessee; USA | NINDS RO1 NS058639; NINDS RO1 NS069909; NINDS RO1 NS078680; NCRR 1S10 RR 17789 |
Available for download | SCR_015542 | VALiDATe29 Atlas | 2026-09-05 06:32:12 | 1 | ||||||||
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Resource Discovery System Resource Report Resource Website |
Resource Discovery System (RRID:SCR_005554) | RDS | data or information resource, database | Resource Discovery System is a web-accessible and searchable inventory of biomedical research resources. Powered by the Resource Discovery System (RDS) that includes a standards-based informatics infrastructure * Biositemaps Information Model * Biomedical Resource Ontology Extensions * Web Services distributed web-accessible inventory framework * Biositemap Resource Editor * Resource Discovery System Source code and project documentation to be made available on an open-source basis. Contributing institutions: University of Pittsburgh, University of Michigan, Stanford University, Oregon Health & Science University, University of Texas Houston. Duke University, Emory University, University of California Davis, University of California San Diego, National Institutes of Health, Inventory Resources Working Group Members | registry, web service, source code, biomedical, software resource, material resource, funding resource, service resource, training resource, people resource | has parent organization: Biositemaps | Clinical and Translational Science Awards Consortium ; National Centers for Biomedical Computing ; NCRR 3UL1RR024153-03S1; NCRR 5UL1RR024128-03S1; NCRR 1UL1RR025008-01; NCRR 1UL1RR024146-01; NCRR 1UL1RR024986-01; NCRR 1UL1RR024153-01; NIDA 3U54DA021519-04S1; NHGRI 3U54HG004028-04S |
nlx_144645 | SCR_005554 | 2026-09-05 06:31:30 | 0 | ||||||||
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Recombinase (cre) Activity Resource Report Resource Website 10+ mentions |
Recombinase (cre) Activity (RRID:SCR_006585) | Recombinase Activity | data or information resource, database | Curated data about all recombinase-containing transgenes and knock-ins developed in mice providing a comprehensive resource delineating known activity patterns and allows users to find relevant mouse resources for their studies. | cre, recombinase, transgene, knock-in, allele, expression, activity pattern, mutagenesis, promoter, driver, image, tissue, specificity assay |
is related to: International Mouse Strain Resource is related to: CREATE is related to: JAX Cre Repository is related to: Allen Institute for Brain Science is related to: CRE Driver Network is related to: Pleiades Promoter Project: Genomic Resources Advancing Therapies for Brain Disorders is related to: EUCOMMTOOLS has parent organization: Mouse Genome Informatics (MGI) |
European Union HEALTH-F4-2009-223487; NCRR RR03 2656; NICHD HD062499 |
SCR_017520, nlx_152803 | http://www.creportal.org/ | SCR_006585 | Cre Portal | 2026-09-05 06:31:36 | 22 | ||||||
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SHRINE Resource Report Resource Website 1+ mentions |
SHRINE (RRID:SCR_006293) | SHRINE | software application, software resource, source code | Software providing a scalable query and aggregation mechanism that enables federated queries across many independently operated patient databases. This platform enables clinical researchers to solve the problem of identifying sufficient numbers of patients to include in their studies by querying across distributed hospital electronic medical record systems. Through the use of a federated network protocol, SHRINE allows investigators to see limited data about patients meeting their study criteria without compromising patient privacy. This software should greatly enable population-based research, assessment of potential clinical trials cohorts, and hypothesis formation for followup study by combining the EHR assets across the hospital system. In order to obtain the maximum number of cases representing the study population, it is useful to aggregate patient facts across as many sites as possible. Cutting across institutional boundaries necessitates that each hospital IRB remain in control, and that their local authority is recognized for each and every request for patient data. The independence, ownership, and legal responsibilities of hospitals predetermines a decentralized technical approach, such as a federated query over locally controlled databases. The application comes with the SHRINE Core Ontology but it can be used with any ontology, even one that is disease specific. The Core Ontology is designed to enable the widest range of studies possible using facts gathered in the EMR during routine patient care. SHRINE allows multiple ontologies to be used for different research purposes on the same installed systems. | software network, clinical database, data sharing, clinical, medical record, federated, platform, network |
is related to: i2b2 Cross-Institutional Clinical Translational Research project is related to: i2b2 Research Data Warehouse has parent organization: Harvard Medical School; Massachusetts; USA |
Informatics for Integrating Biology and the Bedside ; NLM 5 U54 LM008748; NCRR 1 UL1 RR025758-01 |
PMID:19567788 | Available under a BSD3 Open unspecified license Software license. | nlx_151949 | SCR_006293 | Shared Health Research Informatics NEtwork | 2026-09-05 06:31:34 | 8 | |||||
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Wake Forest Cynomolgus Breeding Colony Resource Report Resource Website |
Wake Forest Cynomolgus Breeding Colony (RRID:SCR_006605) | CBC, WFU CBC | biomaterial supply resource, material resource, tissue bank | The Wake Forest Cynomolgus Breeding Colony (CBC) is a colony of cynomolgus macaques (crab-eating macaques, Macaca fascicularis). The cynomolgus colony is designed to produce specific pathogen free (SPF) cynomolgus monkeys for use in biomedical research. The colony, supported by a grant from the NCRR, addresses the growing need for investigators to use in their protocols animals defined for the absence of specific diseases including CHV-1 (Herpes B), simian immunodeficiency virus, and simian retroviruses. An additional important characteristic of this colony is that, unlike many breeding colonies, the NHPs will be fed two defined diets. The first diet is a soy-free diet, not commercial monkey chow. The second diet has the same macronutrients but the protein source is from soy; similar in isoflavone content. A drawback of chow diets is that the exact nutritional product composition is unknown from lot to lot. However, they are always rich in soy bean meal, isoflavones and other constituents of soy bean meal that are known confounders of several types of research projects. All research using the cynomolgus colony must be reviewed and approved by the colony''s scientific board and the Wake Forest Animal Care and Use Committee (ACUC) before any work can be initiated. The scientific board meets regularly to assess the scientific value of each request and to determine whether or not animals/samples/data can be made available. This includes all requests for: # The purchase of animals for use outside the colony # The use of animals within the colony for the collection of blood/tissue samples, behavioral observations or other kinds of testing # The use of the CBC sample/tissue repository # The use of the CBC data repository | long-tailed macaque, non-human primate, blood, tissue, macaca fascicularis, animal model |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Wake Forest Primate Center |
Macaca fascicularis | NCRR | Public | nlx_146209 | SCR_006605 | WFU Cynomolgus Breeding Colony, Cynomolgus Breeding Colony | 2026-09-05 06:31:36 | 0 | |||||
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lapdftext Resource Report Resource Website |
lapdftext (RRID:SCR_006167) | lapdftext, LA-PDFText, | software application, software resource, text extraction software | Software that facilitates accurate extraction of text from PDF files of research articles for use in text mining applications. It is intended for both scientists and natural language processing (NLP) engineers interested in getting access to text within specific sections of research articles. The system extracts text blocks from PDF-formatted full-text research articles and classifies them into logical units based on rules that characterize specific sections. The LA-PDFText system focuses only on the textual content of the research articles. The current version of LA-PDFText is a baseline system that extracts text using a three-stage process: * identification of blocks of contiguous text * classification of these blocks into rhetorical categories * extraction of the text from blocks grouped section-wise. | text mining, pdf, text extraction, natural language processing |
is listed by: FORCE11 has parent organization: University of Southern California; Los Angeles; USA |
NSF 0849977; NIGMS RO1-GM083871; NIMH 1R01MH079068-01A2; NCRR U24 RR025736-01 |
PMID:22640904 | Acknowledgement requested, GNU General Public License, v3 | nlx_151668 | SCR_006167 | Layout-Aware PDF Text Extraction, Layout-Aware Text Extraction from Full-text PDF of Scientific Articles, lapdftext: Layout-Aware Text Extraction from Full-text PDF of Scientific Articles | 2026-09-05 06:31:33 | 0 | |||||
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Alternative Splicing Annotation Project II Database Resource Report Resource Website 1+ mentions |
Alternative Splicing Annotation Project II Database (RRID:SCR_000322) | ASAP II | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE, documented on 8/12/13. An expanded version of the Alternative Splicing Annotation Project (ASAP) database with a new interface and integration of comparative features using UCSC BLASTZ multiple alignments. It supports 9 vertebrate species, 4 insects, and nematodes, and provides with extensive alternative splicing analysis and their splicing variants. As for human alternative splicing data, newly added EST libraries were classified and included into previous tissue and cancer classification, and lists of tissue and cancer (normal) specific alternatively spliced genes are re-calculated and updated. They have created a novel orthologous exon and intron databases and their splice variants based on multiple alignment among several species. These orthologous exon and intron database can give more comprehensive homologous gene information than protein similarity based method. Furthermore, splice junction and exon identity among species can be valuable resources to elucidate species-specific genes. ASAP II database can be easily integrated with pygr (unpublished, the Python Graph Database Framework for Bioinformatics) and its powerful features such as graph query, multi-genome alignment query and etc. ASAP II can be searched by several different criteria such as gene symbol, gene name and ID (UniGene, GenBank etc.). The web interface provides 7 different kinds of views: (I) user query, UniGene annotation, orthologous genes and genome browsers; (II) genome alignment; (III) exons and orthologous exons; (IV) introns and orthologous introns; (V) alternative splicing; (IV) isoform and protein sequences; (VII) tissue and cancer vs. normal specificity. ASAP II shows genome alignments of isoforms, exons, and introns in UCSC-like genome browser. All alternative splicing relationships with supporting evidence information, types of alternative splicing patterns, and inclusion rate for skipped exons are listed in separate tables. Users can also search human data for tissue- and cancer-specific splice forms at the bottom of the gene summary page. The p-values for tissue-specificity as log-odds (LOD) scores, and highlight the results for LOD >= 3 and at least 3 EST sequences are all also reported. | exon, gene structure, genome, alternative splicing, cancer genome alignment, intron, isoform, orthologous exon, orthologous gene, orthologous intron, protein sequence, splice site, tissue, genome alignment, cancer |
is related to: ASAP: the Alternative Splicing Annotation Project has parent organization: University of California at Los Angeles; California; USA |
NCRR U54 RR021813; NIDCR DE-FC02-02ER63421 |
PMID:17108355 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-02572 | SCR_000322 | ASAP II Database, Alternative Splicing Annotation Project II | 2026-09-05 06:31:10 | 2 | |||||
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WTCHG Genome Scan Viewer Resource Report Resource Website 1+ mentions |
WTCHG Genome Scan Viewer (RRID:SCR_001635) | GSCANDB | data or information resource, database, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. Database / display tool of genome scans, with a web interface that lets the user view the data. It does not perform any analyses - these must be done by other software, and the results uploaded into it. The basic features of GSCANDB are: * Parallel viewing of scans for multiple phenotypes. * Parallel analyses of the same scan data. * Genome-wide views of genome scans * Chromosomal region views, with zooming * Gene and SNP Annotation is shown at high zoom levels * Haplotype block structure viewing * The positions of known Trait Loci can be overlayed and queried. * Links to Ensembl, MGI, NCBI, UCSC and other genome data browsers. In GSCANDB, a genome scan has a wide definition, including not only the usual statistical genetic measures of association between genetic variation at a series of loci and variation in a phenotype, but any quantitative measure that varies along the genome. This includes for example competitive genome hybridization data and some kinds of gene expression measurements. | genome, gene, snp, trait, genotype, phenotype, visualization, region, chromosome, quantitative trait locus, hybridization, gene expression | has parent organization: University of Oxford; Oxford; United Kingdom | NIAAA U01AA014425; NCRR R24RR015116; NIGMS R01GM072863; NINDS R01NS049445; NIMH P20-MH 62009; NIAAA U24AA13513 |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_153902 | SCR_001635 | Wellcome Trust Centre for Human Genetics Genome Scan Viewer, Genome Scan Viewer, Genome Scan Database | 2026-09-05 06:31:14 | 3 | ||||||
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Bioscholar Resource Report Resource Website 1+ mentions |
Bioscholar (RRID:SCR_001380) | BioScholar | software application, software resource, source code | Knowledge management and engineering system software for experimental biomedical scientists permitting a single scientific worker (at the level of a graduate student or postdoctoral worker) to design, construct and manage a shared knowledge repository for a research group derived on a local store of PDF files. Usability is especially emphasized within a laboratory so that this software could provide support to experimental scientists attempting to construct a personalized representation of their own knowledge on a medium scale. The BioScholar system uses a graphical interface to create experimental designs based on the experimental variables in the system. The design is then analyzed to construct a tabular input form based on the data flow. They call this methodology "Knowledge Engineering from Experimental Design" or "KEfED". The approach is domain-independent but domain-specific modules reasoning can be constructed to generate interpretations from the observational data represented in the KEfED model. The application is available for download as platform-specific installers including Linux, Unix, Mac OS, and Windows. The installer will install an application that will run the BioScholar server. This server uses Jetty as its integrated web server. | knowledge engineering from experimental design, protocol, lab data management, knowledge engineering, kefed, experimental design, curate, model, scientific experiment, data repository, experimental variable, biomedical, bioinformatics |
is related to: Knowledge Engineering from Experimental Design has parent organization: University of Southern California; Los Angeles; USA |
NCRR 1 U24 RR025736; NIGMS R01-GM083871 |
PMID:21859449 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152541 | SCR_001380 | 2026-09-05 06:31:13 | 1 | ||||||
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ImageVis3D Resource Report Resource Website 10+ mentions |
ImageVis3D (RRID:SCR_009566) | ImageVis3D | data processing software, software application, software resource | A new volume rendering program developed by the NIH/NCRR Center for Integrative Biomedical Computing (CIBC). The main design goals of ImageVis3D are: simplicity, scalability, and interactivity. Simplicity is achieved with a new user interface that gives an unprecedented level of flexibility (as shown in the images). Scalability and interactivity for ImageVis3D mean that both on a notebook computer as well as on a high end graphics workstation, the user can interactively explore terabyte sized data sets. Finally, the open source nature as well as the strict component-by-component design allow developers not only to extend ImageVis3D itself but also reuse parts of it, such as the rendering core. This rendering core, for instance, is planned to replace the volume rendering subsystems in many applications at the SCI Institute and with their collaborators. | magnetic resonance, rendering |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Debian has parent organization: University of Utah; Utah; USA |
NCRR P41-RR12553-15; DOE DEFC0206ER25781 |
Free, Available for download, Freely available | nlx_155776 | http://www.nitrc.org/projects/imagevis3d, https://sources.debian.org/src/imagevis3d/ | SCR_009566 | 2026-09-05 06:30:45 | 10 | ||||||
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Age Related Atrophy Dataset Resource Report Resource Website |
Age Related Atrophy Dataset (RRID:SCR_009528) | Age Related Atrophy Dataset | data or information resource, data set, software resource, source code | Dataset of structural MR images of 70 subjects collected during 2008-2010 across a wide range of ages. The dataset also contains resting state fMRI for most subjects. The structural images are T1 weighted, T2 weighted-FLAIR, 25 direction DTI, and the T1 mapping DESPOT [1] sequence. Reconstructed T1 maps for each subject are also available. The aquisition protocol was designed to study structural differences between young and older adults including both shape and intensity changes. Anonymized DICOM image sessions and processed images for each subject are available. The data is licensed under the Creative Commons Attribution License. It may be used freely for commercial, academic, or other use, as long as the original source is properly cited. http://www.bsl.ece.vt.edu/index.php?page=ara-dataset | magnetic resonance, image collection, mri |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Virginia Polytechnic Institute and State University; Virginia; USA |
Aging | NIH Roadmap for Medical Research ; NCRR U54 RR021813 |
Creative Commons Attribution License | nlx_155692 | http://www.nitrc.org/projects/aradata | SCR_009528 | 2026-09-05 06:30:45 | 0 | |||||
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cBioPortal Resource Report Resource Website 10000+ mentions |
cBioPortal (RRID:SCR_014555) | data or information resource, database, portal | A portal that provides visualization, analysis and download of large-scale cancer genomics data sets. | cancer, genomics, database, portal, data sets, FASEB list | is used by: NaviCom | NCI U24CA143840; NCRR RR031228-02 |
PMID:23550210 PMID:22588877 |
Please cite, Software is available via GitHub, Open source | https://github.com/cBioPortal/cbioportal/ https://github.com/cBioPortal/cbioportal/blob/master/docs/README.md | SCR_014555 | cBioPortal for Cancer Genomics | 2026-09-05 06:30:49 | 10348 | ||||||
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ProteomeTools Resource Report Resource Website 10+ mentions |
ProteomeTools (RRID:SCR_018535) | data or information resource, portal, project portal | Project for building molecular and digital tools from human proteome to facilitate biomedical research, drug discovery, personalized medicine and life science research. | Molecular tool, human proteome, proteome, human, peptide, data |
is related to: ProteomicsDB is related to: ProteomeXchange |
Alexander von Humboldt Foundation ; American Recovery and Reinvestment Act ; European Research Council ; German Federal Ministry of Education and Research ; NCRR S10 RR027584; NHGRI RC2 HG005805; NIGMS P50 GM076547; NIGMS R01 GM087221; Swiss National Science Foundation |
PMID:28135259 | Free, Freely available | http://www.proteometools.org | SCR_018535 | 2026-09-05 06:30:55 | 23 | |||||||
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LONI Debabeler Resource Report Resource Website |
LONI Debabeler (RRID:SCR_001160) | Debabeler | software application, software resource | Software to manage the conversion of imaging data from one file format and convention to another. It consists of a graphical user interface to visually program the translations, and a data translation engine to read, sort and translate the input files, and write the output files to disk. The data translation engine: (1) Reads metadata from a set of image files on disk to identify the source that produced each file; (2) Groups the image files into user-defined collections using image metadata values; (3) Translates each image file collection by reading metadata and pixel data and mapping the data into the appropriate output file format through a programmable set of connected modules. The Debabeler uses the Java Image I/O Plugin Architecture to read and write a wide variety of common medical image file formats, including ANALYZE, MINC, and most variations of DICOM. | workflow, java, analyze, dicom, minc, nifti-1, neuroimaging, file format, translation, magnetic resonance |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Biositemaps has parent organization: University of California at Los Angeles; California; USA |
NCRR 9P41EB015922-15; NCRR 2-P41-RR-013642-15 |
PMID:15670695 | Free, Available for download, Freely available | nif-0000-00321 | http://www.nitrc.org/projects/debabeler | SCR_001160 | 2026-09-05 06:32:24 | 0 | |||||
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Knowledge Engineering from Experimental Design Resource Report Resource Website 1+ mentions |
Knowledge Engineering from Experimental Design (RRID:SCR_001238) | KEfED | software application, software resource | Knowledge engineering software for reasoning with scientific observations and interpretations. The software has three parts: (a) the KEfED model editor - a design editor for creating KEfED models by drawing a flow diagram of an experimental protocol; (b) the KEfED data interface - a spreadsheet-like tool that permits users to enter experimental data pertaining to a specific model; (c) a "neural connection matrix" interface that presents neural connectivity as a table of ordinal connection strengths representing the interpretations of tract-tracing data. This tool also allows the user to view experimental evidence pertaining to a specific connection. The KEfED model is designed to provide a lightweight representation for scientific knowledge that is (a) generalizable, (b) a suitable target for text-mining approaches, (c) relatively semantically simple, and (d) is based on the way that scientist plan experiments and should therefore be intuitively understandable to non-computational bench scientists. The basic idea of the KEfED model is that scientific observations tend to have a common design: there is a significant difference between measurements of some dependent variable under conditions specified by two (or more) values of some independent variable. | experimental design, observation, interpretation, reasoning, experimental data, observational assertion, knowledge engineering, java |
is listed by: FORCE11 is related to: Bioscholar has parent organization: Biomedical Informatics Research Network |
NIGMS R01-GM083871; NIMH 1R01MH079068-01A2; NCRR 1 U24 RR025736-01 |
PMID:21859449 | Free, Available for download, Freely available | nif-0000-07745 | https://wiki.birncommunity.org/display/NEWBIRNCC/Knowledge+Engineering+from+Experimental+Design+%28%27KEfED%27%29 | SCR_001238 | 2026-09-05 06:32:24 | 1 | |||||
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University of Michigan Biorepository Resource Report Resource Website |
University of Michigan Biorepository (RRID:SCR_004643) | MICHER Biorepository | biomaterial supply resource, material resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 24,2025. In 2009, the Medical School and the Michigan Institute for Clinical & Health Research (MICHR) unveiled a new biorepository for U-M researchers in need of a controlled storage environment for biological samples. MICHR is pleased to be able to add to its many services for the research community a centralized biological repository for controlled storage of biological samples, and related services (including DNA, RNA, and other downstream preparation) within the U-M campus. The biorepository, located in the CAP/CLIA-certified Michigan Center for Translational Pathology (MCTP) laboratory at the U-M Traverwood facility on Huron Parkway, will store biologic material, including blood and urine. Sample accessioning and tracking will be accomplished using the caTISSUE suite of programs, and samples will be processed and stored in compliance with CAP/CLIA guidelines. Initially, all samples will be used only with the authorization of the individual investigator who directed the project under which the samples were obtained. Samples will be used in accordance with the relevant informed consent. Long-term plans include federating the database in order to facilitate sharing of data and samples between research teams. | biologic material, blood, urine |
is listed by: One Mind Biospecimen Bank Listing has parent organization: University of Michigan Medical School; Michigan; USA |
NCRR UL1RR024986 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_63960 | http://www.michr.umich.edu/biorepository/index.html | SCR_004643 | 2026-09-05 06:32:33 | 0 | ||||||
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LONI MiND Resource Report Resource Website |
LONI MiND (RRID:SCR_004820) | MiND | service resource, software resource | The MiND: Metadata in NIfTI for DWI framework enables data sharing and software interoperability for diffusion-weighted MRI. This site provides specification details, tools, and examples of the MiND mechanism for representing important metadata for DWI data sets at various stages of post-processing. MiND framework provides a practical solution to the problem of interoperability between DWI analysis tools, and it effectively expands the analysis options available to end users. To assist both users and developers in working with MiND-formatted files, we provide a number of software tools for download. * MiNDHeader A utility for inspecting MiND-extended files. * I/O Libraries Programming libraries to simplify writing and parsing MiND-formatted data. * Sample Files Example files for each MiND schema. * DIRAC LONI''s Diffusion Imaging Reconstruction and Analysis Collection is a DWI processing suite which utilizes the MiND framework. | diffusion magnetic resonance imaging, metadata, dwi, dti, software interoperability, data sharing | has parent organization: David Geffen School of Medicine at UCLA; California; USA | NIH ; NCRR ; NIMH ; NCRR 1U54RR021813-01; NIGMS 5T32GM008042-25; NCRR P41 RR013642; NIMH R01 MH71940; NIBIB EB008432; NIBIB EB008281; NIBIB EB007813; NICHD HD050735 |
PMID:20206274 | nlx_143920 | http://mind.loni.ucla.edu/ | SCR_004820 | MiND: Metadata in NIfTI for DWI, Metadata in NIfTI for DWI | 2026-09-05 06:32:34 | 0 | |||||
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UCSF Chimera Resource Report Resource Website 1000+ mentions |
UCSF Chimera (RRID:SCR_004097) | Chimera | d visualization software, data processing software, software application, software resource | Software tool for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies, sequence alignments, docking results, trajectories, and conformational ensembles. High-quality images and animations can be generated. Chimera includes complete documentation and several tutorials. | molecular modeling, electron microscopy, interactive visualization and analysis, molecular structures |
is used by: Structure-function linkage database is listed by: 3DVC is listed by: SoftCite is related to: Integrative Modeling Platform is related to: UCSF ChimeraX is related to: UCSF ChimeraX has parent organization: Resource for Biocomputing Visualization and Informatics |
NCRR P41 RR001081; NIGMS P41 GM103311 |
PMID:15264254 | Restricted | nlx_143560 | http://plato.cgl.ucsf.edu/chimera/ | SCR_004097 | Chimera - an Extensible Molecular Modeling System, UCSF Chimera - an Extensible Molecular Modeling System | 2026-09-05 06:25:14 | 2257 | ||||
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National Center for Research Resources - Primate Resources Resource Report Resource Website 1+ mentions |
National Center for Research Resources - Primate Resources (RRID:SCR_006863) | NCRR Primate Resources | biomaterial supply resource, material resource, organism supplier | THIS RESOURCE IS NO LONGER IN SERVICE, documented on October 16, 2013. NCRR has been absorbed into other parts of the National Institutes of Health. This organizational structure is no longer available. Provides laboratory scientists and clinical researchers with the resources and tools they need to understand, detect, treat and prevent a wide range of diseases. Animal models, such as nonhuman primates, are a critical component of biomedical research, having profound implications for public health. Scientists depend on laboratory animals and other nonhuman models for investigating biological processes, studying the causes of diseases and testing promising new therapies. Nonhuman primates, in particular, are important for translational research because of their close physiological similarities to humans. They enable discoveries that have direct application to human studies, bridging the gap between basic science and human medicine. Discoveries in animal models are helping scientists test treatments for human conditions such as drug addiction, obesity, malaria, HIV/AIDS and neurodegenerative diseases, accelerating the pace at which these research advances can be translated into treatments for patients. Through its Division of Comparative Medicine, NCRR offers a wide variety of primate resources for NIH-funded scientists across the nation. Additionally, funding opportunities are available to National Primate Research Centers. Eight National Primate Research Centers (NPRCs) located throughout the country provide animals, facilities and expertise in all aspects of nonhuman primate biology and husbandry. These facilities and resources enable collaborative research among NPRC staff scientists, investigators from the NPRC host institution and other NIH-funded researchers. Major areas of research benefiting from the primate centers include AIDS, avian flu, Alzheimer''s disease, Parkinson''s disease, diabetes, asthma and endo-metriosis. The centers????????????????? specialized resources are intended to support investigators who receive their primary research project funding from NIH, but they also may be used by investigators who are funded by other federal, state and local agencies, as well as by research foundations and the private sector. Together the primate centers have more than 28,000 nonhuman primates of 20 different species. This portal covers the following topics: * National Primate Research Centers * Monkey Research Resources * Chimpanzee Research Resources * Chimpanzee Management Program * Specific-Pathogen-Free Macaque Resources * Nonhuman Primate Research Reagents | grant, animal model, non-human primate, monkey, chimpanzee, reagent |
is listed by: One Mind Biospecimen Bank Listing is parent organization of: Yerkes National Primate Research Center is parent organization of: Washington National Primate Research Center |
NCRR ; NIH Blueprint for Neuroscience Research |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00495 | http://www.ncrr.nih.gov/comparative_medicine/resource_directory/primates.aspcenters, http://www.ncrr.nih.gov/primates | SCR_006863 | Nonhuman Primate Research Resources | 2026-09-05 06:26:02 | 1 |
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