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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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SPERMSEG Resource Report Resource Website |
SPERMSEG (RRID:SCR_009044) | SPERMSEG | software application, software resource | Software application for analysis of segregation in single-sperm data (entry from Genetic Analysis Software) | gene, genetic, genomic, c | is listed by: Genetic Analysis Software | nlx_154017 | SCR_009044 | 2026-09-03 05:05:15 | 0 | |||||||||
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Genetic Analysis Workshop Resource Report Resource Website 10+ mentions |
Genetic Analysis Workshop (RRID:SCR_008350) | training resource, workshop | The Genetic Analysis Workshops (GAWs) are a collaborative effort among genetic epidemiologists to evaluate and compare statistical genetic methods. For each GAW, topics are chosen that are relevant to current analytical problems in genetic epidemiology, and sets of real or computer-simulated data are distributed to investigators worldwide. Results of analyses are discussed and compared at meetings held in even-numbered years. The GAWs began in 1982 were initially motivated by the development and publication of several new algorithms for statistical genetic analysis, as well as by reports in the literature in which different investigators, using different methods of analysis, had reached contradictory conclusions. The impetus was initially to determine the numerical accuracy of the algorithms, to examine the robustness of the methodologies to violations of assumptions, and finally, to compare the range of conclusions that could be drawn from a single set of data. The Workshops have evolved to include consideration of problems related to analyses of specific complex traits, but the focus has always been on analytical methods. The Workshops provide an opportunity for participants to interact in addressing methodological issues, to test novel methods on the same well-characterized data sets, to compare results and interpretations, and to discuss current problems in genetic analysis. The Workshop discussions are a forum for investigators who are evolving new methods of analysis as well as for those who wish to gain further experience with existing methods. The success of the Workshops is due at least in part to the focus on specific problems and data sets, the informality of sessions, and the requirement that everyone who attends must have made a contribution. Topics are chosen and a small group of organizers is selected by the GAW Advisory Committee. Data sets are assembled, and six or seven months before each GAW, a memo is sent to individuals on the GAW mailing list announcing the availability of the GAW data. Included with the memo is a short description of the data sets and a form for requesting data. The form contains a statement to be signed by any investigator requesting the data, acknowledging that the data are confidential and agreeing not to use them for any purpose other than the Genetic Analysis Workshop without written permission from the data provider(s). Data are distributed by the ftp or CD-ROM or, most recently, on the web, together with a more complete written description of the data sets. Investigators who wish to participate in GAW submit written contributions approximately 6-8 weeks before the Workshop. The GAW Advisory Committee reviews contributions for relevance to the GAW topics. Contributions are assembled and distributed to all participants approximately two weeks before the Workshop. Participation in the GAWs is limited to investigators who (1) submit results of their analyses for presentation at the Workshop, or (2) are data providers, invited speakers or discussants, or Workshop organizers. GAWs are held just before the meetings of the American Society of Human Genetics or the International Genetic Epidemiology Society, at a meeting site nearby. We choose a location that will encourage interaction among participants and permit an intense period of concentrated work. The proceedings of each GAW are published. Proceedings from GAW16 were published in part by Genetic Epidemiology 33(Suppl 1), S1-S110 (2009) and in part by Biomed Central (BMC Proceedings, Volume 3, Supplement 7, 2009). Sponsors: GAW is funded by the Southwest Foundation for Biomedical Research. | epidemiologist, epidemiology, genetic, algorithm, analysis, method, statistical | nif-0000-25214 | SCR_008350 | GAW | 2026-09-03 05:04:34 | 20 | ||||||||||
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ALLASS Resource Report Resource Website |
ALLASS (RRID:SCR_009040) | ALLASS | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, sun | is listed by: Genetic Analysis Software | nlx_154005 | SCR_009040 | 2026-09-03 05:03:56 | 0 | |||||||||
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PEDJAVA Resource Report Resource Website |
PEDJAVA (RRID:SCR_008429) | PEDJAVA | software application, software resource | Software application that allows pedigree entry and retrieval from an internet browser into a distant MS ACCESS database. Includes IP access restriction, automatic numbering of families and individuals and database consistency checks. (entry from Genetic Analysis Software) | gene, genetic, genomic, jdk, no restriction for client, server win 95/nt | is listed by: Genetic Analysis Software | nlx_154522 | SCR_008429 | PedJava | 2026-09-03 05:04:25 | 0 | ||||||||
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GASP Resource Report Resource Website 100+ mentions |
GASP (RRID:SCR_008703) | GASP | software application, software resource | Software tool for testing and investigating methods in statistical genetics by generating samples of family data based on user specified models. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, fortran77, unix, dec-unix 4.0b, solaris 2.5, sgi-irix 6.2 | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154313 | SCR_008703 | Genometric Analysis Simulation Program | 2026-09-03 05:04:26 | 122 | |||||||
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ASPEX Resource Report Resource Website 1+ mentions |
ASPEX (RRID:SCR_008414) | ASPEX | software application, software resource | A set of programs for performing multipoint exclusion mapping of affected sibling pair data for discrete traits. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, tcl, perl, (the graphic script requires xmgr, available from ftp://ftp.teleport.com/pub/users/pturner/acegr), unix, (solaris/sunos/irix/osf-1), linux, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154234, biotools:aspex | https://bio.tools/aspex | SCR_008414 | Affected Sib Pairs EXclusion map | 2026-09-03 05:04:14 | 9 | |||||||
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GENEHUNTER++SAD Resource Report Resource Website |
GENEHUNTER++SAD (RRID:SCR_008777) | GENEHUNTER++SAD | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 12,2023. Software application with implementation of the Sad statistic, more robust to transmission ratio distortion in the context of allele sharing (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154335 | SCR_008777 | 2026-09-03 05:03:54 | 0 | ||||||||
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GERON Resource Report Resource Website 1+ mentions |
GERON (RRID:SCR_008531) | GERON | software resource, software toolkit | A suite of web-based open source software programs for clinical and genetic study. The aims of this software development in the Laboratory of Neurogenetics, NIA, NIH are * Build retrievable clinical data repository * Set up genetic data bank * Eliminate redundant data entries * Alleviate experimental error due to sample mix-up and genotyping error. * Facilitate clinical and genetic data integration. * Automate data analysis pipelines * Facilitate data mining for genetic as well as environmental factors associated with a disease * Provide an uniformed data acquisition framework, regardless the type of a given disease * Accommodate the heterogeneity of different studies * Manage data flow, storage and access * Ensure patient privacy and data confidentiality/security. The GERON suite consists of several self contained and yet extensible modules. Currently implemented modules are GERON Clinical, Genotyping, and Tracking. More modules are planned to be added into the suite, in order to keep up with the dynamics of the research field. Each module can be used separately or together with others into a seamless pipeline. With each module special attention has been given in order to remain free and open to the academic/government user., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | clinical, genotyping, tracking, genetic, module, pipeline | has parent organization: Intramural Research Program | Aging | NIA | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-30610 | SCR_008531 | 2026-09-03 05:04:14 | 5 | ||||||
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MAREYMAP Resource Report Resource Website 10+ mentions |
MAREYMAP (RRID:SCR_009066) | MAREYMAP | software application, software resource | Software application that is a meiotic recombination rate estimation program. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, r, tcl/tk | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154056 | SCR_009066 | 2026-09-03 05:04:19 | 41 | ||||||||
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ASSOCIATIONVIEWER Resource Report Resource Website |
ASSOCIATIONVIEWER (RRID:SCR_009063) | ASSOCIATIONVIEWER | software application, software resource | A Java application used to display SNPs in a genetic context. Supplementary data (such as genes or LD plots) is downloaded from various public data sources on the fly and saved locally in a cache. Custom data can be added as supplementary tracks. (entry from Genetic Analysis Software) | gene, genetic, genomic, java, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154050, biotools:association_viewer | https://bio.tools/association_viewer | SCR_009063 | 2026-09-03 05:04:23 | 0 | ||||||||
|
WHICHRUN Resource Report Resource Website |
WHICHRUN (RRID:SCR_009064) | WHICHRUN | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application that uses multilocus genotypic data to allocate individuals to their most likely source population. | gene, genetic, genomic, c++, ms-windows, (95/98/nt) | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154051 | http://www.bml.ucdavis.edu/whichrun.htm | SCR_009064 | 2026-09-03 05:05:15 | 0 | |||||||
|
MAP MANAGER QTX Resource Report Resource Website 1+ mentions |
MAP MANAGER QTX (RRID:SCR_009061) | MAP MANAGER QTX | software application, software resource | A graphic, interactive program to map quantitative trait loci using intercrosses, backcrosses or recombinant inbred strains in experimental plants or animals. A completely rewritten cross-platform version of Map Manager QT with enhanced analysis functions. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, and cross-platform code from xvt, ms-windows, macos | is listed by: Genetic Analysis Software | nlx_154046 | SCR_009061 | 2026-09-03 05:04:29 | 4 | |||||||||
|
G-MENDEL Resource Report Resource Website |
G-MENDEL (RRID:SCR_009062) | G-MENDEL | software application, software resource | Software tool for construction of genetic linkage maps and analyzing Mendelian phenotypes. (entry from Genetic Analysis Software) | gene, genetic, genomic, unix, ms-windows | is listed by: Genetic Analysis Software | nlx_154049 | http://cropandsoil.oregonstate.edu/G-mendel | SCR_009062 | 2026-09-03 05:04:38 | 0 | ||||||||
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TLINKAGE Resource Report Resource Website |
TLINKAGE (RRID:SCR_008838) | TLINKAGE | software application, software resource | Software programs that are extensions of the LINKAGE programs that allow the disease phenotype to be under the control of disease two loci. (entry from Genetic Analysis Software) | gene, genetic, genomic, pascal, ms-dos | is listed by: Genetic Analysis Software | nlx_154672 | SCR_008838 | two-locus trait linkage programs | 2026-09-03 05:04:27 | 0 | ||||||||
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TRAP Resource Report Resource Website 100+ mentions |
TRAP (RRID:SCR_009002) | TRAP | software application, software resource | Software tool for determining a regression model of quantitative or binary trait variation when the number of possible genetic predictors is very large, considering only a moderate number of predictors at one time, using unrelated or family data. (entry from Genetic Analysis Software) | gene, genetic, genomic, r, any with r installation | is listed by: Genetic Analysis Software | nlx_154010 | SCR_009002 | Tiled Regression Analysis Package | 2026-09-03 05:03:55 | 397 | ||||||||
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2SNP Resource Report Resource Website 1+ mentions |
2SNP (RRID:SCR_009038) | 2SNP | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. An algorithm resource for scalable phasing method for trios and unrelated individuals. | gene, genetic, genomic | is listed by: Genetic Analysis Software | PMID:18451440 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154003 | https://omictools.com/2snp-tool | http://alla.cs.gsu.edu/~software/2SNP/ | SCR_009038 | 2026-09-03 05:04:28 | 2 | |||||
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AGEINF Resource Report Resource Website |
AGEINF (RRID:SCR_009039) | AGEINF | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application used to infer the age of a rare, selectively-neutral mutation. | gene, genetic, genomic, c | is listed by: Genetic Analysis Software | Aging | PMID:10978301 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154004 | http://www.math.sfu.ca/~jgraham/Papers/Programs/AgeCode/ | SCR_009039 | 2026-09-03 05:05:14 | 0 | |||||
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ALBERT Resource Report Resource Website 10+ mentions |
ALBERT (RRID:SCR_009037) | ALBERT | software application, software resource | Software application that estimates genotype relative risks, genotyping error rates and population risk allele frequencies from marker genotype data in case-parent trios. ALBERT uses the distribution of trio marker genotypes to compute maximum likelihood estimates for the parameters. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, linux, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
biotools:albert, nlx_154002 | https://bio.tools/albert | SCR_009037 | A Likelihood Based Estimation of Risk in Trios | 2026-09-03 05:04:17 | 48 | |||||||
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ACT Resource Report Resource Website |
ACT (RRID:SCR_009033) | ACT | software application, software resource | Software application that contains the following modules: ibd, calculates the proportion of gene shared identical by decent for a nuclear family; ibdn, (modified program of ERPA), which implements a method for assessing increased-allele sharing between all pairs of affected relatives within a pedigree; multic, multivariate analysis for complex traits; ml, estimation of variance components using maximum likelihood; ql, estimation of variance components using quasi likelihood; relcov, generates first degree relationship coefficients for extended families; sim2s, the simulation program that was used to test ACT; cage, Cohort Analysis for Genetic Epidemiology; gh: GeneHunter, heavily modified to assist multipoint calculation using multic; TDT: TDT programs written in SAS; gcc and f77 compilers are necessary. Executable programs are included for compatible operating systems, i.e., Solaris2.6. (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran77, c++, unix, solaris 2.4 | is listed by: Genetic Analysis Software | nlx_153997 | http://www.epigenetic.org/Linkage/act.tar.gz | SCR_009033 | Analysis of Complex Traits | 2026-09-03 05:04:22 | 0 | |||||||
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SNPHAP Resource Report Resource Website 10+ mentions |
SNPHAP (RRID:SCR_008456) | SNPHAP | software application, software resource | Software program for estimating frequencies of haplotypes of large numbers of diallelic markers from unphased genotype data from unrelated subjects (entry from Genetic Analysis Software) | gene, genetic, genomic, c, c++ | is listed by: Genetic Analysis Software | nlx_154642 | SCR_008456 | 2026-09-03 05:03:54 | 30 |
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