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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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University of Texas Southwestern Medical Center Quantitative Light Microscopy Core Facility Resource Report Resource Website 1+ mentions |
University of Texas Southwestern Medical Center Quantitative Light Microscopy Core Facility (RRID:SCR_022605) | QLMC | access service resource, core facility, service resource | Provides access to variety of microscope modalities including laser scanning and spinning disk confocal, multiphoton, wide field deconvolution, CFP/YFP FRET, TIRF, single molecule imaging, and more. Offers customized microscopy training, advise and help with sample preparation, image quantification, and offer basic microscope maintenance. Can streamline your data handling and image visualization as well as automate your image analysis workflow through customized Fiji macros. | Light microscopy, laser scanning and spinning disk confocal, multiphoton, wide field deconvolution, CFP/YFP FRET, TIRF, single molecule imaging, ABRF, USEDit |
is related to: USEDit has parent organization: University of Texas Southwestern Medical Center; Texas; USA |
NCI 1P30 CA142543; NCRR 1S10 RR029731; NIH Office of the Director 1S10 OD021684; NIH Office of the Director 1S10OD028630 |
Restricted | SCR_022605 | Quantitative Light Microscopy Core | 2026-09-05 06:34:27 | 2 | |||||||
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New York University School of Medicine Langone Cytometry and Cell Sorting Core Facility Resource Report Resource Website 1+ mentions |
New York University School of Medicine Langone Cytometry and Cell Sorting Core Facility (RRID:SCR_018827) | access service resource, core facility, service resource | Facility provides cytometry and cell sorting services. Services include immunophenotyping, cell cycle analysis, and intracellular fluorophore detection. Services can be tailored to research needs, certified cytometrists are available to help plan experiments. Offers online and hands-on training in use of cell analyzers and analysis software. | USEDit, flow cytometry service, cell sorting service, immunophenotyping, cell cycle analysis, intracellular fluorophore detection, , ABRF, ABRF |
is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: New York University; New York; USA |
NCI P30 CA016087 | Open | ABRF_762 | https://coremarketplace.org/?FacilityID=762 | SCR_018827 | New York University Cytometry and Cell Sorting Laboratory, Cytometry and Cell Sorting Laboratory | 2026-09-05 06:34:17 | 1 | ||||||
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University of Wisconsin-Madison Advanced Genome Editing Laboratory Resource Report Resource Website 10+ mentions |
University of Wisconsin-Madison Advanced Genome Editing Laboratory (RRID:SCR_021070) | AGEL | access service resource, core facility, service resource | Provides services and expertise to unlock genome editing tools to advance your research. Routinely generates new genome edited models, particularly mouse, rats, swine, and cell lines, as well as supports in vivo editing, novel preclinical therapeutic strategies, pooled lentiCRISPR screening, and other applications. | USEDit, generating genome edited models, mouse, rats, swine, ABRF, ABRF, CRISPR, gene editing, genome editing, lentiCRISPR |
is listed by: ABRF CoreMarketplace has parent organization: University of Wisconsin-Madison; Wisconsin; USA |
NCI P30 CA014520 | ABRF_1148 | https://coremarketplace.org/?FacilityID=1148 | SCR_021070 | University of Wisconsin Madison UW-Genome Editing & Animal Models, UW-Genome Editing & Animal Models, University of Wisconsin Madison Advanced Genome Editing Laboratory, UW Biotechnology Center Advanced Genome Editing Laboratory, Genome Editing and Animal Models Core, University of Wisconsin Madison Genome Editing Core Facility, Transgenic Animal Facility | 2026-09-05 06:34:20 | 14 | ||||||
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Memorial Sloan Kettering Cancer Center Flow Cytometry Core Facility Resource Report Resource Website 1+ mentions |
Memorial Sloan Kettering Cancer Center Flow Cytometry Core Facility (RRID:SCR_021105) | MSKCC FCCF | access service resource, core facility, service resource | Provides advanced instrumentation as well as high level technical and scientific expertise in multi dimensional Flow Cytometry and Cell Sorting, to facilitate science, improve the quality, and advance the scope of MSK research. | Flow Cytometry service, Cell Sorting service, ABRF, |
is listed by: ABRF CoreMarketplace has parent organization: Memorial Sloan Kettering Cancer Center |
NCI CA008748 | ABRF_1154 | https://coremarketplace.org/?FacilityID=1154 | SCR_021105 | Memorial Sloan Kettering Cancer Center MSKCC-FCCF, MSKCC-FCCF | 2026-09-05 06:34:20 | 2 | ||||||
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Dartmouth Geisel School of Medicine Mouse Modeling Core Facility Resource Report Resource Website |
Dartmouth Geisel School of Medicine Mouse Modeling Core Facility (RRID:SCR_021284) | access service resource, core facility, service resource | Supports generation and utilization of genetically modified mice, design and production of genetic constructs with methods including yeast and E.coli recombineering, ES cell targeting (transfection, drug selection, and expansion). Produces transgenic mice: DNA injections into oocytes, ES cell injections into blastocysts.Provides humanized immune system mouse models.Offers start to finish experiment services to assist your many needs, please ask for more info.Other services include animal husbandry, IP and IV injections, blood drawing, necropsy and surgeries- embryo transfers, ovariectomy, vasectomy, tumor removal. | ABRF, genetically modified mice, design and production of genetic constructs, |
is listed by: ABRF CoreMarketplace has parent organization: Dartmouth College; New Hampshire; USA |
NCI | restricted | ABRF_264 | https://coremarketplace.org/?FacilityID=264 | SCR_021284 | Dartmouth Mouse Modeling Shared Resource, Mouse Modeling Shared Resource | 2026-09-05 06:34:20 | 0 | ||||||
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Dartmouth Genomics and Molecular Biology Shared Resource (GMBSR) Resource Report Resource Website 50+ mentions |
Dartmouth Genomics and Molecular Biology Shared Resource (GMBSR) (RRID:SCR_021293) | access service resource, core facility, service resource | Genomics Section provides services and instrumentation that enable DNA/RNA extraction and quality control, next-generation Illumina and Nanopore sequencing, epigenetic profiling, and microarray analysis on a whole-genome scale, from the level organisms to single cells. Molecular Biology Section provides DNA fragment analysis qPCR, Sanger sequencing and NanoString Technology. | USEDit, ABRF, DNA fragment analysis qPCR, Sanger sequencing, NanoString Technology, |
is listed by: ABRF CoreMarketplace has parent organization: Dartmouth College; New Hampshire; USA |
NCI 5P30CA023108; NIGMS P20GM130454; NIH Office of the Director 1S10OD030242; NIH Office of the Director S10OD025235 |
ABRF_995 | https://coremarketplace.org/?FacilityID=995 | SCR_021293 | Molecular Biology Resource, Molecular Biology Shared Resource | 2026-09-05 06:34:21 | 62 | |||||||
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University of Chicago Human Tissue Resource Center Core Facility Resource Report Resource Website 10+ mentions |
University of Chicago Human Tissue Resource Center Core Facility (RRID:SCR_019199) | access service resource, core facility, service resource | Coordinated, centralized, and dedicated program for procuring, processing, dispersing and assessing all types of biospecimens together with downstream histology services. CAP Accredited. | USEDit, biospecimen procuring, biospecimen processing, biospecimen dispersing, biospecimen assessing, ABRF, ABRF |
is listed by: ABRF CoreMarketplace has parent organization: University of Chicago; Illinois; USA |
NCI P30CA014599 | ABRF_1085 | https://coremarketplace.org/?FacilityID=1085 | SCR_019199 | Human Tissue Resource Center | 2026-09-05 06:34:19 | 47 | |||||||
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University of Chicago Integrated Light Microscopy Core Facility Resource Report Resource Website 50+ mentions |
University of Chicago Integrated Light Microscopy Core Facility (RRID:SCR_019197) | access service resource, core facility, service resource | Offers microscopy imaging, including bright field color and DIC, fluorescence multi-dimension,TIRFM including bleaching, ablation, FLIM and high resolution, highspeed, high sensitivity, confocal, and physiologic techniques, STED, GSD3D, lightsheet selective plane illumination and lattice lightsheet structured illumination super resolution microscopy. | USEDit, microscopy, imaging, super resolution microscopy, confocal, fluorescence, physiologic techniques, ABRF, ABRF |
is listed by: ABRF CoreMarketplace has parent organization: University of Chicago; Illinois; USA |
NCI P30 CA014599 | ABRF_1083 | https://coremarketplace.org/?FacilityID=1083 | SCR_019197 | Integrated Light Microscopy | 2026-09-05 06:34:19 | 61 | |||||||
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New York University Grossman School of Medicine Langone Health Cytometry and Cell Sorting Laboratory Core Facility Resource Report Resource Website 10+ mentions |
New York University Grossman School of Medicine Langone Health Cytometry and Cell Sorting Laboratory Core Facility (RRID:SCR_019179) | access service resource, core facility, service resource | Provides access to flow cytometry and cell sorting technologies and instruments. If your research requires cytometric analysis, instruments acquire optical measurements using different lasers to detect fluorophores with high level of precision. | flow cytometry, cell sorting, cytometric analysis, ABRF |
is listed by: ABRF CoreMarketplace has parent organization: New York University; New York; USA |
NCI P30CA016087 | ABRF_821 | https://coremarketplace.org/?FacilityID=821 | SCR_019179 | Cytometry and Cell Sorting Laboratory | 2026-09-05 06:34:19 | 22 | |||||||
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Motif Mutation Analysis for Regulatory Genomic Elements Resource Report Resource Website 500+ mentions |
Motif Mutation Analysis for Regulatory Genomic Elements (RRID:SCR_021902) | MMARGE | data analysis software, data processing software, software application, software resource, software toolkit | Software package that integrates genome wide genetic variation with epigenetic data to identify collaborative transcription factor pairs. Optimized to work with chromatin accessibility assays such as ATAC-seq or DNase I hypersensitivity, as well as transcription factor binding data collected by ChIP-seq. Used to identify combinations of cell type specific transcription factors while simultaneously interpreting functional effects of non-coding genetic variation. | genome wide genetic variation, epigenetic data, identify collaborative transcription factor pairs, interpreting functional effects, non-coding genetic variation | NCI CA173903; NHLBI R00 123485; NIDDK DK091183; NIGMS GM085764 |
PMID:29893919 | Free, Available for download, Freely available | SCR_021902 | 2026-09-05 06:29:47 | 608 | ||||||||
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SEER Datasets and Software Resource Report Resource Website 10+ mentions |
SEER Datasets and Software (RRID:SCR_003293) | data or information resource, disease-related portal, portal, software resource, topical portal | Portal provides SEER research data and software SEER*Stat and SEER*Prep. SEER incidence and population data associated by age, sex, race, year of diagnosis, and geographic areas can be used to examine stage at diagnosis by race/ethnicity, calculate survival by stage at diagnosis, age at diagnosis, and tumor grade or size, determine trends and incidence rates for various cancer sites over time. SEER releases new research data every Spring based on the previous November’s submission of data. | NCI, cancer, statistics, epidemiology, analysis |
lists: SEER*Stat lists: NCI SEER Cancer Stage Variable Documentation is related to: Surveillance Epidemiology and End Results has parent organization: National Cancer Institute |
cancer | NCI | Free, Freely available | nif-0000-31490 | SCR_003293 | The Surveillance Epidemiology and End Results (SEER) Program, SEER Datasets Software, SEER Datasets & Software, The Surveillance Epidemiology and End Results (SEER) Program of the National Cancer Institute | 2026-09-05 06:29:56 | 28 | ||||||
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SOURCE Resource Report Resource Website 50+ mentions |
SOURCE (RRID:SCR_005799) | SOURCE | analysis service resource, data analysis service, data or information resource, database, production service resource, service resource | SOURCE compiles information from several publicly accessible databases, including UniGene, dbEST, UniProt Knowledgebase, GeneMap99, RHdb, GeneCards and LocusLink. GO terms associated with LocusLink entries appear in SOURCE. The mission of SOURCE is to provide a unique scientific resource that pools publicly available data commonly sought after for any clone, GenBank accession number, or gene. SOURCE is specifically designed to facilitate the analysis of large sets of data that biologists can now produce using genome-scale experimental approaches Platform: Online tool | genomic, functional annotation, ontology, gene expression, gene, genome, statistical analysis, bio.tools, FASEB list |
is listed by: Gene Ontology Tools is listed by: Debian is listed by: bio.tools is related to: Gene Ontology has parent organization: SMD |
NIGMS ; NCI CA85129-04; NIGMS GM07365 |
PMID:12519986 | Restricted | biotools:source, nlx_149287 | https://login.stanford.edu/idp/profile/SAML2/Redirect/SSO?execution=e1s1, https://bio.tools/source | SCR_005799 | 2026-09-05 06:29:59 | 69 | |||||
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Pathbase Resource Report Resource Website 10+ mentions |
Pathbase (RRID:SCR_006141) | Pathbase | controlled vocabulary, data access protocol, data or information resource, data repository, database, image collection, image repository, ontology, service resource, software resource, storage service resource, web service | Database of histopathology photomicrographs and macroscopic images derived from mutant or genetically manipulated mice. The database currently holds more than 1000 images of lesions from mutant mice and their inbred backgrounds and further images are being added continuously. Images can be retrieved by searching for specific lesions or class of lesion, by genetic locus, or by a wide set of parameters shown on the Advanced Search Interface. Its two key aims are: * To provide a searchable database of histopathology images derived from experimental manipulation of the mouse genome or experiments conducted on genetically manipulated mice. * A reference / didactic resource covering all aspects of mouse pathology Lesions are described according to the Pathbase pathology ontology developed by the Pathbase European Consortium, and are available at the site or on the Gene Ontology Consortium site - OBO. As this is a community resource, they encourage everyone to upload their own images, contribute comments to images and send them their feedback. Please feel free to use any of the SOAP/WSDL web services. (under development) | histopathology, photomicrograph, macroscopic, mutant, genetically manipulated, pathology, transgenic, rodent, mpath ontology, mouse pathology ontology, skinbase, genotype, skin, gene, tissue, hair, mutant mouse strain, bio.tools |
is listed by: bio.tools is listed by: Debian is related to: Gene Ontology has parent organization: University of Cambridge; Cambridge; United Kingdom is parent organization of: Mouse Pathology Ontology |
Lesion, Mutant mouse strain, Inbred mouse strain | North American Hair Research Society ; Ellison Medical Foundation ; European Union QLRI-1999-00320; European Union LSHG-CT-2006-037188; NCI CA089713; NCRR RR17436; NIH AR49288 |
PMID:20587689 PMID:15623888 PMID:14681470 |
Except where otherwise noted, Creative Commons Attribution-NonCommercial-ShareAlike License, v3 Unported, Images on the database remain the property of the persons generously allowing their images to be used and are acknowledged within each record. Images should not be modified, Reproduced or disseminated without the express permission of the submitter. | biotools:pathbase, nlx_151637 | https://bio.tools/pathbase | SCR_006141 | Pathbase - European mutant mouse pathology database | 2026-09-05 06:29:59 | 11 | |||
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Human Reference Protein Interactome Project Resource Report Resource Website 10+ mentions |
Human Reference Protein Interactome Project (RRID:SCR_015670) | HuRI | data or information resource, database, portal, project portal, software resource, web application | Project portal for the Human Reference Protein Interactome Project, which aims generate a first reference map of the human protein-protein interactome network by identifying binary protein-protein interactions (PPIs). It achieves this by systematically interrogating all pairwise combinations of predicted human protein-coding genes using proteome-scale technologies. | protein interactome, protein-protein interaction, ppi, pairwise combination, proteome, human reference | NHGRI R01/U01HG001715; NHGRI P50HG004233; NHLBI U01HL098166; NHLBI U01HL108630; NCI U54CA112962; NCI R33CA132073; NIH RC4HG006066; NICHD ARRA R01HD065288; NICHD ARRA R21MH104766; NICHD ARRA R01MH105524; NIMH R01MH091350; NSF CCF-1219007; NSERC RGPIN-2014-03892 |
PMID:25416956 | Freely Available, Free, Available for download | SCR_015670 | HuRI: The Human Reference Protein Interactome Mapping Project | 2026-09-05 06:30:06 | 20 | |||||||
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Xiphophorus Genetic Stock Center Resource Report Resource Website 100+ mentions |
Xiphophorus Genetic Stock Center (RRID:SCR_008340) | biomaterial supply resource, material resource, organism supplier | Supplier of xiphophorus (platyfish or swordtails) from pedigreed parental lines, representing variety of species. In addition to supplying strains and providing consultation on husbandry and genetic questions, the XGSC produces custom interspecies hybrids (both first generation F1, and backcross hybrid generation BC1) for a variety of projects. | RIN, Resource Information Network, est, fish, cryopreservation, microsatellite, swordtail, RRID Community Authority |
is used by: Integrated Animals is listed by: Resource Information Network has parent organization: Texas State University; Texas; USA |
NCI P01 CA75137; NIH Office of the Director R24 OD011120; University of Texas MD Anderson Center |
nif-0000-24971 | https://orip.nih.gov/comparative-medicine/programs/vertebrate-models | SCR_008340 | XGSC | 2026-09-05 06:26:21 | 109 | |||||||
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Moffitt Cancer Center Resource Report Resource Website 1+ mentions |
Moffitt Cancer Center (RRID:SCR_008730) | Moffitt | institutional portal | H. Lee Moffitt Cancer Center & Research Institute has made a lasting commitment to the prevention and cure of cancer, working tirelessly in the areas of patient care, research and education to advance one step further in fighting this disease. As part of an elite group of National Cancer Institute (NCI) Comprehensive Cancer Centers, Moffitt focuses on the development of early stage translational research aimed at the rapid translation of scientific discoveries to benefit patient care. Since the first patient admission in October 1986, Moffitt physicians, scientists and staff members have worked together to establish a tradition of excellence offered in an atmosphere characterized by kindness, caring and hope. The Cancer Center''s future growth in clinical care and research rests firmly on this tradition and makes possible the changes ahead. The mission of Moffitt Cancer Center is to contribute to the prevention and cure of cancer. Moffitt''s vision is to be the leader in scientific discovery and translation into compassionate care, cures, and prevention of cancer for our community and the world. As it grows to fulfill its mission, the Cancer Center will continue to be distinguished by its compassionate and effective patient care. Moffitt Cancer Center is a not-for-profit institution. It includes private patient rooms, the Southeast''s largest Blood and Marrow Transplant Program, outpatient treatment programs that record more than 320,500 visits a year, the Moffitt Research Center, Moffitt Cancer Center at International Plaza and the Lifetime Cancer Screening & Prevention Center. | cancer, human |
has parent organization: University of South Florida; Florida; USA is parent organization of: Moffitt Cancer Center Tissue Core is parent organization of: Moffitt Cancer Center Proteomics and Metabolomics Core Facility is parent organization of: Moffitt Cancer Center Tissue Core Facility is parent organization of: Moffitt Cancer Center Small Animal Imaging Laboratory Core Facility is parent organization of: Moffitt Cancer Center Molecular Genomics Core Facility is parent organization of: Moffitt Cancer Center Molecular Genomics Core Facility |
NCI | nlx_143722 | SCR_008730 | H. Lee Moffitt Cancer Center and Research Institute, H. Lee Moffitt Cancer Center & Research Institute | 2026-09-05 06:26:27 | 5 | |||||||
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Central Brain Tumor Registry of the United States Resource Report Resource Website 10+ mentions |
Central Brain Tumor Registry of the United States (RRID:SCR_008748) | CBTRUS | nonprofit organization | Voluntary, non-profit organization dedicated to collecting and disseminating statistical data. Resource for gathering and disseminating epidemiologic data on all primary benign and malignant brain and other CNS tumors. | human, brain, tumor, cancer, central nervous system, epidemiology, incidence, survival, diagnosis, treatment, benign, malignant, registry, epidemiological data, aggregator, clinical, statistics, population, histology, age, gender, race, hispanic, mortality | Brain tumor, Aging | American Brain Tumor Association ; National Brain Tumor Society ; Pediatric Brain Tumor Foundation ; NCI contract HHSN261201000576P |
PMID:23095881 | Application required., The community can contribute to this resource | grid.492337.8, ISNI: 0000 0004 0484 2205, nlx_143889 | https://ror.org/03849s113 | SCR_008748 | 2026-09-05 06:26:27 | 26 | |||||
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piNET Resource Report Resource Website 1+ mentions |
piNET (RRID:SCR_018693) | analysis service resource, data access protocol, production service resource, service resource, software resource, web service | Web platform for downstream analysis and visualization of proteomics data. Server that facilitates integrated annotation, analysis and visualization of quantitative proteomics data, with emphasis on PTM networks and integration with LINCS library of chemical and genetic perturbation signatures in order to provide further mechanistic and functional insights. Primary input for server consists of set of peptides or proteins, optionally with PTM sites, and their corresponding abundance values. | Analysis, visualization, proteomics data, integrated annotation, quantitative proteomics data, PTM network, LINCS library integration, genetic perturbation signature, peptide, protein, post translational modification site, PTM site, data | is related to: LINCS Project | NCATS UL1 TR001425; NCI T32 CA236764; NHLBI U54 HL127624; NIEHS P30 ES006096; NIGMS U01 GM120953; NIMH R01 MH107487 |
DOI:10.1093/nar/gkaa436 | Free, Freely available | SCR_018693 | 2026-09-05 06:28:41 | 4 | ||||||||
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MyGene.info Resource Report Resource Website 10+ mentions |
MyGene.info (RRID:SCR_018660) | data access protocol, service resource, software resource, web service | Web service for querying or retrieving gene annotation data. | Querying gene, gene, annotation, gene annotation, annotation data, gene annotation data, retrieving gene annotation data, bio.tools |
is listed by: Debian is listed by: bio.tools |
NCATS UL1 TR001114; NCI K22 CA188163; NHGRI U01 HG006476; NHGRI U01 HG008473; NIGMS GM083924; NIGMS U54 GM114833; Scripps Translational Science Institute |
DOI:10.1186/s13059-016-0953-9 | Free, Freely available | biotools:mygene.info, BioTools:mygene.info | https://bio.tools/mygene.info, https://bio.tools/mygene.info, https://bio.tools/mygene.info | SCR_018660 | 2026-09-05 06:28:40 | 34 | ||||||
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RobotReviewer Resource Report Resource Website 1+ mentions |
RobotReviewer (RRID:SCR_021064) | software application, software resource, text-mining software, web application | Open source web based system that uses machine learning and NLP to semi automate biomedical evidence synthesis, to aid practice of Evidence Based Medicine. Processes full text journal articles describing randomized controlled trials. Designed to automatically extract key data items from reports of clinical trials. | Data automatic extraction, clinical trial reports, automatically extract key data, Evidence Based Medicine, text journal articles processing, randomized controlled trials |
is related to: Northeastern University; Massachusetts; USA is related to: University of Texas at Austin; Texas; USA |
Medical Research Council UK ; NCI UH2 CA203711; NLM R01 LM012086 |
PMID:29093610 DOI:10.1093/jamia/ocv044 |
Free, Available for download, Freely available | https://github.com/ijmarshall/robotreviewer, https://robotreviewer.vortext.systems/ | SCR_021064 | Automating Biomedical Evidence Synthesis | 2026-09-05 06:29:34 | 1 |
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