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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Measurement Control And Data Analysis Software Resource Report Resource Website 1+ mentions |
Measurement Control And Data Analysis Software (RRID:SCR_018309) | MES | data analysis software, data processing software, software application, software resource | Software package for measurement control and analysis by Femtonics Ltd. Designed in MATLAB and used in field of cellular and network imaging. New version offers new scanning features and improved overall usability. | Measurement control, measurement analysis, Femtonics Ltd, cellular imaging, networking imaging, data scanning | uses: MATLAB | Restricted | SCR_018309 | 2026-09-05 06:28:34 | 6 | |||||||||
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Jupyter Notebook Resource Report Resource Website 100+ mentions |
Jupyter Notebook (RRID:SCR_018315) | software resource, web application | Open source web application to create and share documents that contain live code, equations, visualizations and narrative text. Used for data cleaning and transformation, numerical simulation, statistical modeling, data visualization, machine learning. | Create and share document, live code, equation, visualization, narrative text document, data cleaning, data transformation, numerical simulation, statistical modeling, data visualization, machine learning |
is used by: NWB Explorer is related to: Jupyter-client is related to: MERMAID is related to: Docker based GPU enabled Jupyterlab is related to: JupyterLab |
Free, Available for download, Freely available | SCR_018315 | 2026-09-05 06:28:34 | 400 | ||||||||||
|
O Resource Report Resource Website 1+ mentions |
O (RRID:SCR_018394) | 3d spatial image, 3d visualization software, data or information resource, data processing software, data visualization software, image, software application, software resource | Software for visualization of macromolecular structures, atomic coordinates, and 3D intensity maps, and for building macromolecular structures. | Macromolecular structure, atomic coordinate, protein structure, 3D visualization, model building, atomic modelling | has parent organization: Uppsala University; Uppsala; Sweden | DOI:10.1107/s0108767390010224 | Free, Available for download, Freely available | SCR_018394 | 2026-09-05 06:28:35 | 1 | |||||||||
|
COVID-19 research data on Figshare Resource Report Resource Website |
COVID-19 research data on Figshare (RRID:SCR_018277) | data or information resource, portal, topical portal | Portal to discover COVID-19 open research data on Figshare. Figshare collection of COVID-19 related research data. | COVID-19, COVID-19 data, open research data | is listed by: Data and Computational Resources to Address COVID-19 | COVID-19 | Free, Freely available | SCR_018277 | 2026-09-05 06:28:33 | 0 | |||||||||
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SPCM Resource Report Resource Website 1+ mentions |
SPCM (RRID:SCR_018310) | data acquisition software, data processing software, software application, software resource | Software tool as instrument software for SPC- and DPC Modules by Becker and Hickl GmbH. | Data acquisition, instrument software, Becker and Hickl GmbH | Restricted | SCR_018310 | 2026-09-05 06:28:34 | 4 | |||||||||||
|
MS Amanda Resource Report Resource Website 1+ mentions |
MS Amanda (RRID:SCR_018396) | algorithm resource, data analysis software, data processing software, software application, software resource | Software scoring system to identify peptides out of tandem mass spectrometry data using database of known proteins. Universal identification algorithm optimized for high resolution and high accuracy tandem mass spectra. Software tool as peptide and protein identification algorithm developed by Bioinformatics Research Group University of Applied Sciences Upper Austria in close cooperation with group of Karl Mechtler at IMP Vienna, Austria. | Tandem mass spectrometry, protein database, scoring system, peptide identification, data, search algorithm, protein identification algorithm, peptide identification, proteomic | is related to: PeptideShaker | Austrian Science Fund ; European Community Seventh Framework Programme ; MeioSys |
PMID:24909410 | Free, Available for download, Freely available | https://ms.imp.ac.at/?goto=msamanda | SCR_018396 | MS Amanda 2.0, Universal Identification Algorithm Optimized for High Accuracy Tandem Mass Spectra | 2026-09-05 06:28:35 | 2 | ||||||
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ATCOR: SphygmoCor Resource Report Resource Website 10+ mentions |
ATCOR: SphygmoCor (RRID:SCR_018323) | instrument resource | System for measuring pulse wave velocity, pulse wave analysis by ATCOR. System for noninvasive central blood pressure waveform assessment. Provides measures of central arterial pressure waveform and pulse wave velocity as well as assessment of arterial stiffness via waveform analysis e.g. augmentation index, augmented pressure, and reflected wave magnitude. | Measuring pulse, wave velocity, wave analysis, ATCOR, noninvasive blood pressure assessment, arterial stiffness, augmentation index, augmented pressure, wave magnitude | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_018323.pdf | https://atcormedical.com/wp-content/uploads/simple-file-list/Downloads/SphygmoCor-XCEL-V1_3-Operators-Manual.pdf | SCR_018323 | SphygmoCor XCEL | 2026-09-05 06:28:34 | 12 | ||||||||
|
Itamar: EndoPat Resource Report Resource Website |
Itamar: EndoPat (RRID:SCR_018322) | instrument resource | System for non-invasive vascular function assessment by Itamar Medical Ltd. | Non invasive test, vascular function, endothelial dysfunction diagnosis, endothelial damage measurement, Itamar Medical Ltd | Restricted | https://www.itamar-medical.com/wp-content/uploads/2019/07/OM1695214.pdf | SCR_018322 | 2026-09-05 06:28:34 | 0 | ||||||||||
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Interactive Dotplot Resource Report Resource Website 1+ mentions |
Interactive Dotplot (RRID:SCR_018329) | analysis service resource, data access protocol, production service resource, service resource, software resource, web service | Web-based tool to create customized interactive graphics, including univariate scatterplots, box plots, and violin plots, for comparing values of continuous variable across different study groups, visualization of subgroups or clusters of non-independent data. Web visualization tool for creating dot plots, box plots and violin plots for small sample size data sets. | Customized interactive graphic, univariate scatterplot, box plot, violin plot, continuous variable comparing, across different study group, subgroup visualization, subgroup cluster, non independent data visualization, data, data set | NCATS UL1 TR000135 | PMID:28974579 | Free, Freely available | SCR_018329 | 2026-09-05 06:28:34 | 2 | |||||||||
|
Jittered Boxplots for Toxicological Data Resource Report Resource Website |
Jittered Boxplots for Toxicological Data (RRID:SCR_018326) | ToxBox | data access protocol, service resource, software resource, web service | Web tool for creating box plots with dot plots. Boxplot for grouped and clustered data in toxicology. Jittered boxplots for visualizing grouped and clustered data from toxicological studies together with individual raw values and indications of statistical significance. | Box plot, dot plot, grouped data, clustered data, toxicology, visualizing data, toxicological study data, raw value, statistical significance | PMID:26438403 | Free, Freely available | SCR_018326 | Jittered boxplots | 2026-09-05 06:28:34 | 0 | ||||||||
|
outbreak.info Resource Report Resource Website 100+ mentions |
outbreak.info (RRID:SCR_018282) | data or information resource, portal, topical portal | Resource to aggregate all outbreak information into single location during outbreaks of emerging diseases, such as COVID-19. | COVID-19 data collection, single location, outbreak information, emerging disease |
is listed by: Data and Computational Resources to Address COVID-19 has parent organization: Scripps Research Institute |
COVID-19 | NIAID | Free, Freely available | SCR_018282 | 2026-09-05 06:28:34 | 155 | ||||||||
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Data-Against-COVID Team Resource Report Resource Website |
Data-Against-COVID Team (RRID:SCR_018288) | data or information resource, portal, topical portal | Group of volunteer data scientists, machines learning experts, bioinformaticians and professional software developers who have joined together to offer their expertise for any data analysis problems that arise in context of ongoing coronavirus pandemic. | Data scientist, volunteer, machine learning expert, bioinformaticians, professional software developer, data analysis, coronavirus pandemic | is listed by: Data and Computational Resources to Address COVID-19 | COVID-19 | Free, Freely available | SCR_018288 | 2026-09-05 06:28:34 | 0 | |||||||||
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Cloud resources for COVID-19 research Resource Report Resource Website |
Cloud resources for COVID-19 research (RRID:SCR_018286) | data or information resource, portal, topical portal | Cloud resources for COVID-19 research provided by Rescale, Google Cloud, and Microsoft Azure. High performance computing resources immediately available for COVID-19 research. | Cloud resorce, COVID-19, Rescale, Google Cloud, Microsoft Azure, computing resource | is listed by: Data and Computational Resources to Address COVID-19 | COVID-19 | Free, Freely available | SCR_018286 | 2026-09-05 06:28:34 | 0 | |||||||||
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Precisionary: Compresstome VF-700 Resource Report Resource Website 1+ mentions |
Precisionary: Compresstome VF-700 (RRID:SCR_018409) | instrument resource | Vibrotome by Precisionary Instruments designed for cutting fixed tissue slices for histology studies. Offers two point stabilization of blade holder to eliminate unwanted chatter marks on surfaces of tissue slice. Fully automated to section fixed tissues with thickness range of 4 um to 2000 um with adjustable precision of 1 um. | Precisionary Instrument, cutting fixed tissue, tissue slice, histology, two point stabilization blade holder, instrument, equipment | Restricted | https://nbtltd.com/wp-content/uploads/2019/11/compresstome-vf-700-0z-user-manual_final.pdf | SCR_018409 | Compresstome VF-700-0Z | 2026-09-05 06:28:36 | 1 | |||||||||
|
Database of Immune Cell Epigenomes Resource Report Resource Website 50+ mentions |
Database of Immune Cell Epigenomes (RRID:SCR_018259) | DICE | data access protocol, data or information resource, database, software resource, web service | Database of Immune Cell Expression, Expression quantitative trait loci (eQTLs) and Epigenomics. Collection of identified cis-eQTLs for 12,254 unique genes, which represent 61% of all protein-coding genes expressed in human cell types. Datasets to help reveal effects of disease risk associated genetic polymorphisms on specific immune cell types, providing mechanistic insights into how they might influence pathogenesis. | Data set, immune cell expression, expression quantitative trait loci, epigenomics, data, cis-eQLC, gene, protein coding gene, human cell type, genetic polymorphism disease, immune cell, pathogenesis | has parent organization: La Jolla Institute for Immunology | NCRR S10 RR027366; NIAID R24 AI108564; NIH Office of the Director S10 OD016262; William K. Bowes Jr Foundation |
PMID:30449622 | Free, Freely available | SCR_018259 | Database of Immune Cell Expression, Expression quantitative trait loci (eQTLs) and Epigenomics | 2026-09-05 06:28:33 | 73 | ||||||
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Olympus: VS120 microscope Resource Report Resource Website 10+ mentions |
Olympus: VS120 microscope (RRID:SCR_018411) | instrument resource | VS120 Virtual Slide Microscope. Part of slide loader system for manually loading standard slides by Olympus. | Microscope, Virtual Slide Microscopy, Instrument operator, slide loader system, loading standard slide, Olympus, instrument, equipment, USEDit | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018411.pdf | Model_Number_VS120 | https://health.usf.edu/-/media/Files/Medicine/Core/Olympus-VS120-QS-E.ashx | SCR_018411 | Olympus VS120, VS120 Virtual Slide Microscope | 2026-09-05 06:28:36 | 15 | |||||||
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Biolucida Resource Report Resource Website 1+ mentions |
Biolucida (RRID:SCR_018256) | data analysis software, data management software, data processing software, data storage software, software application, software resource | Enables visualization, storage and sharing of large image data. Cloud based system by MBF Bioscience to help with data from 2D and 3D slide scanners, confocal Z-stacks, lightsheet whole brain images. System for data storage and management, data analysis and visualization. Data is stored in secure and permanent way. Available also is free application named Biolucida Viewer, for viewing public images or images shared by collaborators owning Biolucida. | biolucida, big data, image, Microscopy, whole slide images, virtual images, cloud, visualization, data storage, data analysis | is used by: SPARC Portal | DOI:10.1002/cne.23329 | Restricted | http://wiley.biolucida.net/link/ | SCR_018256 | , Micro File Plus, MicroFile+, MicroFile | 2026-09-05 06:28:33 | 6 | |||||||
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https://www.thermofisher.com/order/catalog/product/4366073#/4366073 Resource Report Resource Website |
https://www.thermofisher.com/order/catalog/product/4366073#/4366073 (RRID:SCR_018377) | Mastermix reagent | SCR_018377 | 2026-09-05 06:28:35 | 0 | ||||||||||||||
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SymPy Resource Report Resource Website 10+ mentions |
SymPy (RRID:SCR_018417) | software library, software resource, software toolkit | Software Python library for symbolic mathematics. It aims to become full featured computer algebra system (CAS) while keeping code as simple as possible in order to be comprehensible and easily extensible. | Python, Python library, symbolic mathematics, computer algebra system, bio.tools |
is listed by: Debian is listed by: bio.tools |
Free, Available for download, Freely available | biotools:SymPy | https://bio.tools/SymPy | SCR_018417 | 2026-09-05 06:28:36 | 10 | ||||||||
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multcomp Resource Report Resource Website 10+ mentions |
multcomp (RRID:SCR_018255) | data analysis software, data analytics software, data processing software, software application, software resource | Software R package for simultaneous inference in general parametric models. Offers interface to perform multiple comparisons in general context. Simultaneous tests and confidence intervals for general linear hypotheses in parametric models, including linear, generalized linear, linear mixed effects, and survival models. | Simultaneous inference, parametric model, simultaneous test, confidence interval, linear hypotheses, survival model | is listed by: CRAN | Free, Freely available | http://multcomp.r-forge.r-project.org/ | SCR_018255 | 2026-09-05 06:28:33 | 26 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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