Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PoloPlus USB Drive software Resource Report Resource Website 10+ mentions |
PoloPlus USB Drive software (RRID:SCR_017614) | data analysis software, data processing software, software application, software resource | Software to perform Probit and Logit analsis with grouped data. Original Polo Software available through USB Drive. Able to work on all versions of Windows as all files are kept on USB. | LeOra Software LLC, grouped, data, analysis, USB, drive, probit, logit | Restricted | SCR_017614 | Probit Or LOgit Plus USB Drive, PoloPlus USB Drive | 2026-09-05 06:28:27 | 35 | ||||||||||
|
StatPackets Resource Report Resource Website |
StatPackets (RRID:SCR_017613) | data or information resource, narrative resource, standard specification | Standardized method to export statistical data, associated with KOMP project. Standard way to keep data and results of analyzing that data together. | Standardized, method, export, statistical, data, KOMP, result, analysis, together | is related to: Knockout Mouse Project | Free, Freely available | SCR_017613 | 2026-09-05 06:28:27 | 0 | ||||||||||
|
TReNA Resource Report Resource Website |
TReNA (RRID:SCR_017458) | data analysis software, data processing software, network analysis software, software application, software resource | Methods for reconstructing transcriptional regulatory networks. | Reconstructing, transcriptional, regulatory, network, BRAIN Initiative | is recommended by: BRAIN Initiative | NIMH MH114788 | Free, Available for download, Freely available | SCR_017458 | 2026-09-05 06:28:24 | 0 | |||||||||
|
EBRAINS Knowledge Graph Resource Report Resource Website 1+ mentions |
EBRAINS Knowledge Graph (RRID:SCR_017612) | data management software, data or information resource, database, service resource, software application, software resource | Metadata management system built for EBRAINS. Multi modal metadata store which brings together information from different areas of Human Brain Project as well as from external partners. Graph database tracks linkage between experimental data and neuroscientific data science supporting more extensive data reuse and complex computational research.Supports rich terminologies, ontologies and controlled vocabularies. Built by design to support iterative elaborations of common standards and supports these by probabilistic suggestion and review systems. | Metadata, managing, system, neuroscience, experimental, data, human, brain, graph, database, terminology, ontology |
is related to: Human Brain Project is related to: MarmotGraph |
European Union’s Horizon 2020 Framework Programme for Research and Innovation 720270; European Union’s Horizon 2020 Framework Programme for Research and Innovation 785907 |
Free, Freely available | https://kg.humanbrainproject.eu/ | SCR_017612 | New Enabling Infrastructure for Neuroscience Knowledge Graph, EBRAINS Knowledge Graph (KG), HBP Knowledge Graph | 2026-09-05 06:28:26 | 8 | |||||||
|
immuneXpresso Resource Report Resource Website |
immuneXpresso (RRID:SCR_017578) | data or information resource, service resource, software application, software resource, text-mining software | Software tool as text-mining engine that structures and standardizes knowledge of immune intercellular communication. Knowledgebase contains interactions and separate mentions of cells or cytokines in context of thousands of diseases. Intercellular interactions were text-mined from all available PubMed abstracts across disease conditions. | Structure, standardize, immune, cellular, interaction, cytokine, disease, cell, PubMed, abstract |
is listed by: NIDDK Information Network (dkNET) is listed by: OMICtools |
NIAID ; NIH ; Rappaport Family Institute for Research in the Medical Sciences |
PMID:29912209 | Free, Freely available | SCR_017578 | 2026-09-05 06:28:26 | 0 | ||||||||
|
rjags Resource Report Resource Website 10+ mentions |
rjags (RRID:SCR_017573) | data analysis software, data processing software, software application, software resource | Software package provides interface from R to JAGS library for Bayesian data analysis. Program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation. | Analysis, Bayesian, hierarchical, model, Markov Chain Monte Carlo, simulation |
is listed by: CRAN is related to: R Project for Statistical Computing |
Free, Available for download, Freely available | https://github.com/cran/rjags/blob/master/INSTALL | SCR_017573 | RJAGS library | 2026-09-05 06:28:26 | 23 | ||||||||
|
Project DARE Resource Report Resource Website 1+ mentions |
Project DARE (RRID:SCR_017538) | DARE | consortium, data or information resource, organization portal, portal, project portal | EU data infrastructure with workflow connectivity layer. Common Workflow Language. Project pioneers methodologies and integrated set of supporting technologies that will transform European RIs productivity and rate of innovation when three challenges – extreme data, extreme computation and extreme complexity – are faced simultaneously. | European Union, infrastructure, workflow, connectivity, layer, methodology, integrated, data, Agile | European Union | SCR_017538 | project-dare, Delivering Agile Research Excellence on European e-Infrastructures | 2026-09-05 06:28:25 | 1 | |||||||||
|
Leica: CM1520 Cryostat Resource Report Resource Website 1+ mentions |
Leica: CM1520 Cryostat (RRID:SCR_017543) | instrument resource | Cryostat for routine histology and cryosectioning including critical applications such as Mohs surgery. Brain sectioning. Actively cooled quick freezing shelf with defrost function and refrigeration system are provided. | Leica, cryostat, histology, surgery, brain, sectioning | This product has been discontinued | https://www.leicabiosystems.com/sites/default/files/media_product-download/2022-01/Leica_CM1520_IFU_2v4O_en.pdf | SCR_017543 | 2026-09-05 06:28:25 | 4 | ||||||||||
|
Dynamo Resource Report Resource Website 1+ mentions |
Dynamo (RRID:SCR_017541) | 3d visualization software, data analysis software, data processing software, data visualization software, image analysis software, image reconstruction software, software application, software resource, time-series analysis software | Software tool for neuron timelapse reconstruction, registration and analysis for Dynamic Morphometrics. | Neuron, dynamic, morphometrics, timelapse, reconstruction, analysis, image | CIHR | Free, Available for download, Freely available | https://padster.github.io/pyDynamo/ | SCR_017541 | pyDynamo, python Dynamo | 2026-09-05 06:28:25 | 2 | ||||||||
|
Single Cell Developmental Database Resource Report Resource Website 1+ mentions |
Single Cell Developmental Database (RRID:SCR_017546) | SCDevDB | data or information resource, data repository, data set, database, service resource, storage service resource | Database for insights into single cell gene expression profiles during human developmental processes. Interactive database provides DE gene lists in each developmental pathway, t-SNE map, and GO and KEGG enrichment analysis based on these differential genes. | Single, cell, gene, expression, profile, human, development, process, data | GRF Research Project ; RGC General Research Fund |
DOI:10.3389/fgene.2019.00903 | Free, Available for download, Freely available | SCR_017546 | Single-Cell Developmental Database | 2026-09-05 06:28:25 | 2 | |||||||
|
Transcriptive Resource Report Resource Website |
Transcriptive (RRID:SCR_017545) | data analysis software, data processing software, software application, software resource, software toolkit | Software tool as bioinformatics analysis pipeline used for RNA sequencing data. Workflow processes raw data from FastQ inputs, aligns reads, generates gene and transcript counts, and performs quality control on results. | Analysis, pipeline, RNA, sequencing, data, raw, FastQ, input, align, read, gene, transcript, count, quality, control | Free, Available for download, Freely available | SCR_017545 | 2026-09-05 06:28:25 | 0 | |||||||||||
|
Thermo Fisher: Applied Biosystems: 3730xl Capillary Genetic Sequencer Resource Report Resource Website 1+ mentions |
Thermo Fisher: Applied Biosystems: 3730xl Capillary Genetic Sequencer (RRID:SCR_018059) | instrument resource | 96-capillary DNA analyzer that performs DNA fragment analysis applications such as microsatellites, AFLP, SNP analysis, mutation detection and traditional DNA sequencing. Has multiple automation features. Performs sequencing and fragment analysis applications including resequencing, microsatellite analysis, AFLP, LOH, SSCP, SNP screening and SNP validation. | ABRF, capillary sequencer, 96-capillary DNA analyzer, high throughput genetic analysis, DNA fragment analysis, microsatellites, AFLP, SNP analysis, mutation detection, DNA sequencing, instrument, equipment | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018059.pdf | Model_Number_3730xl | SCR_018059 | Applied Biosystems 3730xl Capillary Sequencer | 2026-09-05 06:28:30 | 3 | ||||||||
|
Agilent: Femto Pulse System Resource Report Resource Website 1+ mentions |
Agilent: Femto Pulse System (RRID:SCR_018058) | instrument resource | Femto Pulse System separates large molecular weight DNA fragments and detects nucleic acids into femtogram range.Fragment analyzer that provides pulsed field power supply which allows large molecular weight DNA fragments to be separated and nucleic acids detected into femtogram range. Ability to separate high molecular weight DNA up to 165 kb and detect nucleic acids down to 50 fg per uL input concentration makes system ideal for long-read NGS QC, gDNA, small RNA, or cfDNA analysis from low concentration samples. | ABRF, Agilent, Femto Pulse System, Instrument Equipment, USEDit, instrument, equipment | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018058.pdf | Model_Number_Femto Pulse, SCR_019498 | https://www.agilent.com/cs/library/usermanuals/public/quick-guide-fp-1002-gdna-165-kb-kit-SD-AT000141.pdf | SCR_018058 | AATI FemtoPulse, Advanced Analytical Technologies, Inc. FEMTO Pulse Fragment Analyzer, AATI FEMTO Pulse Fragment Analyzer | 2026-09-05 06:28:30 | 3 | |||||||
|
Thermo Fisher: Applied Biosystems: 3730 Genetic Analyzer Resource Report Resource Website 1+ mentions |
Thermo Fisher: Applied Biosystems: 3730 Genetic Analyzer (RRID:SCR_018052) | instrument resource | Medium to high throughput genetic analyzer that performs DNA fragment analysis applications such as microsatellites, AFLP, SNP analysis, mutation detection and traditional DNA sequencing. Upgradeable to 96 capillaries. | ABRF, genetic analyzer, 96 capillary electrophoresis, DNA fragment analysis, microsatellites, AFLP, SNP analysis, mutation detection, DNA sequencing, instrument, equipment | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018052.pdf | Model_Number_3730 | https://assets.thermofisher.com/TFS-Assets/LSG/manuals/4478016A.pdf | SCR_018052 | 3730 DNA Analyzer | 2026-09-05 06:28:30 | 3 | |||||||
|
Eppendorf: 5418 R Centrifuge Resource Report Resource Website |
Eppendorf: 5418 R Centrifuge (RRID:SCR_018050) | instrument resource | Refridgerated centrifuge with 18 place capacity rotor that accomdates low to medium capacity in 1.5 or 2.0 mL tubes and Microtainer. Speed allows for standard molecular biology applications. Compact size and quiet operation. | ABRF, refrigerated centrifuge, Eppendorf, benchtop centrifuge, instrument, equipment | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018050.pdf | Model_Number_5418_R | https://www.eppendorf.com/product-media/doc/en/173997/Eppendorf_Centrifugation_Operating-manual_Centrifuge-5418-R.pdf | SCR_018050 | Eppendorf 5418 Centrifuge (2) | 2026-09-05 06:28:30 | 0 | |||||||
|
Bio-Rad: CFX384 Real-Time Detection System Resource Report Resource Website 10+ mentions |
Bio-Rad: CFX384 Real-Time Detection System (RRID:SCR_018057) | instrument resource | Real Time PCR instrument in 384-well format that performs high-throughput data acquisition. System utilizes temperature control and sensitive, 4-color detection optics to deliver qPCR results for singleplex or multiplex reactions. Quickly set up runs and monitor amplification traces in real time on integrated LCD touch screen, or use CFX Maestro Software to design experiment and analyze results from connected computer. | ABRF, Real-Time Instrument, RT PCR, equipment, Bio Rad | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018057.pdf | Model_Number_CFX384 | https://www.bio-rad.com/webroot/web/pdf/lsr/literature/Bulletin_5639C.pdf | SCR_018057 | Bio-Rad CFX384 Real-Time System | 2026-09-05 06:28:30 | 34 | |||||||
|
BD Biosciences: FACSCanto Flow Cytometer Resource Report Resource Website 10+ mentions |
BD Biosciences: FACSCanto Flow Cytometer (RRID:SCR_018055) | instrument resource | Flow cytometry system that performs reliable performance, accuracy, and ease-of-use for clinical diagnostic services. System has 10 color capability, optical enhancements, and 4-3-3 configuration deliver high sensitivity and resolution for accurate results. | ABRF, Flow Cytometer, flow cytometry, multicolor analysis, BD FACSCanto, instrument, equipment | is listed by: USEDit | Model_Number_Canto | https://www.bdbiosciences.com/content/dam/bdb/marketing-documents/facscanto_techspecs.pdf | SCR_018055 | Canto-blue and red lasers | 2026-09-05 06:28:30 | 22 | ||||||||
|
Bruker: 9.4T Biospec Biospec Magnetic Resonance Imaging Resource Report Resource Website 1+ mentions |
Bruker: 9.4T Biospec Biospec Magnetic Resonance Imaging (RRID:SCR_018054) | instrument resource | MRI system that performs preclinical and molecular MR imaging. MRI CryoProbe technology combined with ultra high field USR magnets deliver high spatial resolution in-vivo. Any small animal MR imaging application in life science, biomedical and preclinical research can be conducted. | ABRF, Magnetic Resonance Imaging, small animal imaging, BioSpec, Bruker, preclinical veterinary imaging, molecular MRI, instrument, equipment | is listed by: USEDit | Model_Number_Biospec | SCR_018054 | 9.4T Bruker Biospec MRI | 2026-09-05 06:28:30 | 6 | |||||||||
|
Bio-Rad: CFX96 Real-Time PCR Detection System Resource Report Resource Website 100+ mentions |
Bio-Rad: CFX96 Real-Time PCR Detection System (RRID:SCR_018064) | instrument resource | Real Time PCR detection system that combines optical technology with temperature control. Six channel, five colors and one FRET channel, real-time PCR instrument for singlexplex or multiplex reactions. Quickly set up runs and monitor amplification traces in real time on integrated LCD touch screen, or use included CFX Maestro Software to design experiment and analyze results from connected computer. | ABRF, Real-Time Instrument, RT PCR, equipment, Bio Rad | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018064.pdf | Model_Number_CFX96 | https://www.bio-rad.com/webroot/web/pdf/lsr/literature/10010424.pdf | SCR_018064 | CFX96 Real Time PCR | 2026-09-05 06:28:30 | 101 | |||||||
|
Zeiss: LSM 710 Confocal Inverted Microscope Resource Report Resource Website 10+ mentions |
Zeiss: LSM 710 Confocal Inverted Microscope (RRID:SCR_018063) | instrument resource | Inverted microscope that enables confocal microscopy in cell and developmental biology. | ABRF, Confocal Inverted Microscope, Zeiss, instrument, equipment | is listed by: USEDit | Model_Number_LSM 710 | https://www.zmbh.uni-heidelberg.de/Central_Services/Imaging_Facility/info/780ZEN2010.pdf | SCR_018063 | LSM-710 with incubation | 2026-09-05 06:28:30 | 44 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the dkNET Resources search. From here you can search through a compilation of resources used by dkNET and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that dkNET has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on dkNET then you can log in from here to get additional features in dkNET such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into dkNET you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
Email: info_at_ dknet.org
