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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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TfSiteScan Resource Report Resource Website 10+ mentions |
TfSiteScan (RRID:SCR_010667) | analysis service resource, data analysis service, production service resource, service resource | The Tfsitescan tool is for promoter sequence analysis and works best with sequences of ~500 nt. Simply enter the nucleic acid sequence in one of the common sequence formats (IG, Genbank, EMBL, GCG, DNAStrider, or Fasta). | has parent organization: IFTI-Mirage | nlx_73876 | SCR_010667 | 2026-09-12 01:02:05 | 43 | |||||||||||
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Precision Allograft Solutions Resource Report Resource Website |
Precision Allograft Solutions (RRID:SCR_010702) | biomaterial supply resource, material resource, tissue bank | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 2, 2016. A commercial tissue bank focusing on human tissue. | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_88227 | SCR_010702 | 2026-09-12 01:02:05 | 0 | |||||||||||
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Asterand Resource Report Resource Website 1+ mentions |
Asterand (RRID:SCR_010703) | Asterand | biomaterial supply resource, material resource, tissue bank | Provides human tissue for drug discovery scientists. * Human Biospecimens: Frozen & Fixed Human Tissues; Human RNA/DNA; Human Primary Cells / Cell lines; Custom Procurement; Oncology tissue, biofluid and RNA sets at special prices * Human Tissue-Based Services: Gene Expression, Molecular Pathology, Biochemical Pharmacology, Metabolism and Toxicity * Predictive Human Disease Models |
is listed by: One Mind Biospecimen Bank Listing is related to: University of Michigan Human Breast Cancer Cell Lines |
nlx_88875 | SCR_010703 | Asterand: Partners in Human Tissue Research, Asterand plc | 2026-09-12 01:02:05 | 6 | |||||||||
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Tissue Solutions Resource Report Resource Website 1+ mentions |
Tissue Solutions (RRID:SCR_010672) | biomaterial supply resource, material resource, tissue bank | Tissue Solutions offers you a single point to access the entire range of human biological materials for all your research and development needs. This includes diseased and normal tissues in fresh, frozen and FFPE formats. Using our large network of ethical sources we find the tissues you require, to your specifications and will deliver them to your door. Our goal is to provide high quality and well characterized samples to biotech companies, the pharmaceutical community and contract research organizations worldwide. We also organize customized and prospective tissue acquisition projects and give specialized advice relating to all aspects of the acquisition process, including intellectual input on project design. We appreciate that you would rather spend your time finding new biomarkers and developing, testing and validating novel drugs to cure human disease than spend your time sourcing material to help you do your work, so let our dedicated Tissue Acquisitionists lessen your workload and become a virtual part of your team. | is listed by: One Mind Biospecimen Bank Listing | nlx_75586 | SCR_010672 | Tissue Solutions Ltd. | 2026-09-12 01:02:05 | 5 | ||||||||||
|
T-REX Resource Report Resource Website 100+ mentions |
T-REX (RRID:SCR_010715) | T-REX | analysis service resource, data analysis service, production service resource, service resource | T-REX is a free, platform-independent online tool that allows for an integrated, rapid, and more robust analysis of T-RFLP data. Despite increasing popularity and improvements in terminal restriction fragment length polymorphism (T-RFLP) and other microbial community fingerprinting techniques, there are still numerous obstacles that hamper the analysis of these datasets. Many steps are required to process raw data into a format ready for analysis and interpretation. These steps can be time-intensive, error-prone, and can introduce unwanted variability into the analysis. Accordingly, we developed T-REX, free, online software for the processing and analysis of T-RFLP data. Analysis of T-RFLP data generated from a multiple-factorial study was performed with T-REX. With this software, we were able to i) label raw data with attributes related to the experimental design of the samples, ii) determine a baseline threshold for identification of true peaks over noise, iii) align terminal restriction fragments (T-RFs) in all samples (i.e., bin T-RFs), iv) construct a two-way data matrix from labeled data and process the matrix in a variety of ways, v) produce several measures of data matrix complexity, including the distribution of variance between main and interaction effects and sample heterogeneity, and vi) analyze a data matrix with the additive main effects and multiplicative interaction (AMMI) model. | has parent organization: Cornell University; New York; USA | Microsoft Corporation ; NSF DGE 0221658 |
PMID:19500385 | nlx_89468 | SCR_010715 | T-REX (T-RFLP analysis EXpedited), T-REX: Software for the processing and analysis of T-RFLP data, T-RFLP analysis EXpedited | 2026-09-12 01:02:05 | 122 | |||||||
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National University Tissue Repository Resource Report Resource Website |
National University Tissue Repository (RRID:SCR_010717) | biomaterial supply resource, material resource, tissue bank | Tissue bank that provides samples and associated clinical information to associated researchers. | Available to researchers at NUH and NUS | nlx_90105 | http://specimencentral.com/National University Hospital Tissue Bank | SCR_010717 | 2026-09-12 01:02:05 | 0 | ||||||||||
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Textensor Limited Resource Report Resource Website |
Textensor Limited (RRID:SCR_010719) | production service resource, service resource, training service resource | Textensor Limited specializes in software development and consulting related to interactive web based information management systems, web services, data modeling, and scientific computing. Our flagship product, a.nnotate.com, was launched in January 2008. It allows on-line review, annotation and discussion of web pages and a wide range of document types, including PDF and DOC, via a web browser. In April 2007 we launched PublicationsList.org to facilitate access to scientific research papers. It allows researchers to easily keep complete and reliable records of their research output on the web and gained more than 3000 users in the first 8 months. In 2005, Textensor won a SMART:Scotland award for a pilot study into techniques for authoring structured content from text. The first commercial product developed from this technology is a.nnotate.com. Recent consultancy clients include the University of Edinburgh for the development of PSICS, the Parallel Stochastic Ion Channel Simulator, the Okinawa Institute of Science and Technology for prototype code for stochastic diffusion, Memosyne Ltd for development of on-line memory tests for children, and Pearson Assessment for implementation of the Automated Working Memory Assessment. |
is parent organization of: A.nnotate is parent organization of: PublicationsList.org |
nlx_90784 | SCR_010719 | Textensor | 2026-09-12 01:02:05 | 0 | ||||||||||
|
SVF Foundation Resource Report Resource Website |
SVF Foundation (RRID:SCR_010678) | biomaterial supply resource, material resource, tissue bank | Not yet vetted by NIF curator | nlx_77391 | SCR_010678 | 2026-09-12 01:02:05 | 0 | ||||||||||||
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omiRas Resource Report Resource Website 10+ mentions |
omiRas (RRID:SCR_010833) | omiRas | analysis service resource, data analysis service, production service resource, service resource | A web server for the annotation, comparison and visualization of interaction networks of non-coding RNAs derived from small RNA-Sequencing experiments of two different conditions. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
PMID:23946503 | biotools:omiras, OMICS_00383 | https://bio.tools/omiras | SCR_010833 | 2026-09-12 01:02:06 | 14 | |||||||
|
Corn Fungal Resistance Associated Sequences Database Resource Report Resource Website |
Corn Fungal Resistance Associated Sequences Database (RRID:SCR_010644) | CFRAS-DB | data or information resource, database | A relational database with dynamic querying and data integration that can be used by researchers to identify genetic sequences with a high probability of being associated with aflatoxin accumulation resistance, according to multiple lines of evidence. CFRAS-DB integrates genomic, proteomic, and genetic data from multiple studies in maize dealing with aflatoxin accumulation or Aspergillus flavus resistance., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | has parent organization: Mississippi State University; Mississippi; USA | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_65361 | SCR_010644 | 2026-09-12 01:02:05 | 0 | |||||||||
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CGHweb Resource Report Resource Website 10+ mentions |
CGHweb (RRID:SCR_010923) | CGHweb | analysis service resource, data analysis service, production service resource, service resource | Data analysis service enabling users to analyse their array-CGH data with multiple algorithms simultaneously. |
is listed by: OMICtools has parent organization: Harvard Medical School; Massachusetts; USA |
OMICS_00713 | SCR_010923 | 2026-09-12 01:02:06 | 12 | ||||||||||
|
Align-GVGD Resource Report Resource Website 50+ mentions |
Align-GVGD (RRID:SCR_010772) | Align-GVGD | analysis service resource, data analysis service, production service resource, service resource | A freely available, web-based program that combines the biophysical characteristics of amino acids and protein multiple sequence alignments to predict where missense substitutions in genes of interest fall in a spectrum from enriched delterious to enriched neutral. | is listed by: OMICtools | Free | OMICS_00125 | SCR_010772 | 2026-09-12 01:02:06 | 93 | |||||||||
|
PlanTAPDB Resource Report Resource Website |
PlanTAPDB (RRID:SCR_010897) | PlanTAPDB | data or information resource, database | A phylogeny-based comprehensive database of plant transcription associated proteins. | is listed by: OMICtools | PMID:17337525 | Free | OMICS_00558 | SCR_010897 | 2026-09-12 01:02:06 | 0 | ||||||||
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MutationTaster Resource Report Resource Website 1000+ mentions |
MutationTaster (RRID:SCR_010777) | MutationTaster | analysis service resource, data analysis service, production service resource, service resource | Evaluates disease-causing potential of sequence alterations. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools is listed by: SoftCite |
PMID:20676075 | Acknowledgement requested | biotools:mutation_taster, OMICS_00153 | https://bio.tools/mutation_taster | SCR_010777 | 2026-09-12 01:02:06 | 4781 | ||||||
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Mouse ES Stem Cell Bank Resource Report Resource Website 1+ mentions |
Mouse ES Stem Cell Bank (RRID:SCR_010660) | biomaterial supply resource, material resource, tissue bank | Not yet vetted by NIF curator | nlx_69742 | SCR_010660 | 2026-09-12 01:02:05 | 2 | ||||||||||||
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Genomic HyperBrowser Resource Report Resource Website 10+ mentions |
Genomic HyperBrowser (RRID:SCR_010909) | Genomic HyperBrowser | analysis service resource, data analysis service, production service resource, service resource | A generic web-based system, providing statistical methodology and computing power to handle a variety of biological inquires on genomic datasets. | genomic, genomic track, gene regulation, disease association, epigenetic modification, genome |
is listed by: OMICtools has parent organization: University of Oslo; Oslo; Norway |
PMID:23632163 PMID:21182759 |
OMICS_00638 | SCR_010909 | The Genomic HyperBrowser | 2026-09-12 01:02:06 | 20 | |||||||
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Vaccine damage reports database Resource Report Resource Website |
Vaccine damage reports database (RRID:SCR_010740) | Vaccine damage reports database | data or information resource, database | Database of case reports of adverse reactions to vaccinations. There are 806 reports (May 2013). If you would like to report a case, please go to report your own vaccine reaction. The user may search by keywords or sort by vaccine, country, age, outcome, gender and hospital admission. | vaccine, adverse reaction, clinical, male, female, child, adult | Adverse reaction to vaccine, Aging | The community can contribute to this resource | nlx_97470 | SCR_010740 | Vaccine damages database, Adverse reaction/vaccine damage database | 2026-09-12 01:02:06 | 0 | |||||||
|
UCSC Cancer Genomics Browser Resource Report Resource Website 500+ mentions |
UCSC Cancer Genomics Browser (RRID:SCR_011796) | Cancer Genomics Browser | data or information resource, database, service resource | A suite of web-based tools to visualize, integrate and analyze cancer genomics and its associated clinical data. It is possible to display your own clinical data within one of their datasets. | genome, genomics, clinical, next-generation sequencing, chromosome, gene, FASEB list |
is listed by: OMICtools has parent organization: University of California at Santa Cruz; California; USA |
Cancer | NCI ; NHGRI ; American Association for Cancer Research ; UCSF Comprehensive Cancer Center ; California Institute for Quantitative Biosciences |
PMID:23109555 PMID:21059681 PMID:19333237 |
Acknowledgement requested | OMICS_00925 | SCR_011796 | 2026-09-12 01:02:06 | 589 | |||||
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Molecular Modeling DataBase Resource Report Resource Website 10+ mentions |
Molecular Modeling DataBase (RRID:SCR_010623) | MMDB | data or information resource, database | The Molecular Modeling DataBase (MMDB), also known as Entrez Structure, is a database of experimentally determined structures obtained from the RCSB Protein Data Bank (PDB). MMDB is developed by the Structure Group of the NCBI Computational Biology Branch. The data processing procedure at NCBI results in the addition of a number of useful features that facilitate computation on the data and link them to many other data types in the Entrez system. The structure database is considerably smaller than Entrez''s Protein or Nucleotide databases, but a large fraction of all known protein sequences have homologs in this set, and one may often learn more about a protein by examining 3-D structures of its homologs. These are accessible as Related Structures in the Links menu of Entrez Protein sequence records (illustrated example). It is then possible to align the query protein to the structure-based sequence, as shown in the illustration on this page. Additional resources can be used along with MMDB to interactively view the structures, find similar 3D structures, learn about the types of interactions and bound chemicals that have been found to exist among the similar 3D structures, and more. | macromolecule, structure, 3d spatial image, protein structure, gold standard |
is related to: NCBI Structure has parent organization: NCBI |
PMID:17135201 | nlx_56387 | http://www.ncbi.nlm.nih.gov/sites/entrez?db=structure, http://www.ncbi.nlm.nih.gov/structure | SCR_010623 | Entrez Structure, NCBI Structure, Structure database, Structure (Molecular Modeling Database) | 2026-09-12 01:02:04 | 16 | ||||||
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Dhruv Dental Stem Cell Bank Resource Report Resource Website |
Dhruv Dental Stem Cell Bank (RRID:SCR_010744) | biomaterial supply resource, material resource, tissue bank | Not yet vetted by NIF curator | nlx_98186 | SCR_010744 | 2026-09-12 01:02:06 | 0 |
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