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https://edspace.american.edu/openbehavior/project/automated-mouse-homecage-two-bottle-choice-test/

Project related to assessing preferences by mice among fluids in their homecages.Provided system includes homecage fitted apparatus for automated, photobeam based detection of licks in two bottle choice task. Used for automated mouse homecage two bottle choice test.

Proper citation: Automated mouse homecage two bottle choice test project (RRID:SCR_021457) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/closed-loop-system/

Portal includes system for combined behavioral tracking, electrophysiology, and closed loop stimulation provided by University of Oslo scientists.Integrates Bonsai and Open Ephys with multiple modules.Provides guide for setting up this system.

Proper citation: Closed Loop System project (RRID:SCR_021475) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/usv-detector/

Project related to ultrasonic vocalizations detection. Provides device designed for automatic detection of 50kHz ultrasonic vocalizations.

Proper citation: Ultrasonic Vocalizations Detector project (RRID:SCR_021471) Copy   

•   Source: SciCrunch Registry

https://ethowatcher.paginas.ufsc.br/

Software tool for behavioral and video tracking analysis in laboratory animals. Used to support detailed ethography, video tracking, and extraction of kinematic variables from digital video files of laboratory animals.

Proper citation: EthoWatcher (RRID:SCR_021504) Copy   

•   Source: SciCrunch Registry

https://www.feldmanlab.org/

Project related to function of cerebral cortex. Included model system for studying cortical function is provided by UC Berkeley scientists. System includes lickometer which employs infrared beam and sensor to minimize electrical noise artifacts during neurophysiology experiments and can be easily mounted in micromanipulator for precise and repeatable positioning.Open source lickometer was designed in conjunction with open source water delivery system.Together, these provide basic hardware for DIY behavioral assay and reward system for mice.

Proper citation: Feldman Lab Lickometer project (RRID:SCR_021469) Copy   

•   Source: SciCrunch Registry

https://github.com/arnefmeyer/mousecam

Software Python package with functions for extracting and analyzing data recorded using camera system.Used to monitor behaviors including eye position, whisking, and ear movements in unrestrained animals.Can be mounted in combination with neural implants for recording brain activity.

Proper citation: Mousecam (RRID:SCR_021503) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/hao-chen-lab-repository/

Project aims to establish computing platform for rodent behavior research using Raspberry Pi computer. They have built several devices for conducting operant conditioning and monitoring environmental data.

Proper citation: Hao Chen Lab Repository project (RRID:SCR_021467) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/pidose/

Project related to oral drug administration to group housed mice. Provides open source system for oral drug administration to group housed mice. System includes home cage attached device that weighs individual animals and administers daily dosage of drug solution based on each animal bodyweight through their drinking water. Group housed mice are identified through use of RFID tagging and receive both regular water and drug solution drops by licking at spout within PiDose module.

Proper citation: PiDose project (RRID:SCR_021441) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/openeyetrack/

Project related to measurement of fast eye movement dynamics.Tracking eye position in head fixed applications system created by scientists from Boston University. Includes software tool as part of multithreaded eye tracker and Teledyne DALSA Camera with GigE-V framework APIs for Linux.

Proper citation: openEyeTrack project (RRID:SCR_021399) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/actifield/

Project related to measuring locomotor activity.System includes infrared motion detection and arduino to record activity in variety of chamber set ups. Provides actimeter and software tool to measure and record locomotor activity.

Proper citation: Actifield project (RRID:SCR_021452) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/rad/

Project related to tracking and recording activity in rodent home cages.Provides device that utilizes passive infrared (PIR) sensor to detect movement in cages and logs data to microSD card. Device is wireless and battery powered, and can record data for about 3 weeks on charge.

Proper citation: Rodent Activity Detector project (RRID:SCR_021451) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/homecage-2bottle-choice/

Project related to studies of liquid ingestive behaviors used in neuroscience to investigate reward related behavior, metabolism, and circadian biology. Provides automated home cage sipper device for monitoring liquid ingestive behavior in rodents developed by Washington University, St. Louis scientists. Homecage fitted apparatus for automated, photobeam based detection of licks in two bottle choice task.

Proper citation: Automated Home Cage Rodent Two bottle Choice Test project (RRID:SCR_021445) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/pasta/, https://github.com/ikodvanj/ratPASTA/

Project related to multifunctional neurobehavioral system developed by scientists at University of Zagreb School of Medicine, Zagreb, Croatia.System includes hardware and software tools.Provides software package for processing and visualising data from startle experiments in rodents or experiments measuring grip strength in rodents.

Proper citation: Platform for Acoustic STArtle project (RRID:SCR_021446) Copy   

•   Source: SciCrunch Registry

https://github.com/gordonberman/MotionMapper

Software tool to work on videos (not poses).Uses image analysis and multivariate statistical methods to find stereotyped behaviors in flies, mice, and other species.

Proper citation: MotionMapper (RRID:SCR_021384) Copy   

•   Source: SciCrunch Registry

https://github.com/YttriLab/B-SOID

Software pipeline that pairs unsupervised pattern recognition with supervised classification to achieve fast predictions of behaviors that are not predefined by users.Unsupervised learning algorithm that discovers and classifies actions based on inherent statistics of data points provided.

Proper citation: Behavioral Segmentation of Open-field in DeepLabCut (RRID:SCR_021385) Copy   

•   Source: SciCrunch Registry

https://github.com/murthylab/sleap

Method for pose estimation that uses deep neural networks.Open source software tool as deep learning based framework for estimating positions of animal body parts.Supports multi animal pose estimation and tracking, and includes advanced labeling or training.SLEAP is next generation of LEAP and allows for tracking multiple animals.

Proper citation: Social LEAP (RRID:SCR_021382) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/stytra/

Project related to involvement in larval zebrafish behavioral experiments.Provides integrated system for stimulation, tracking and closed loop behavioral experiments. Provides timed stimulus presentation, interfacing with external devices and simultaneous real time tracking of behavioral parameters such as position, orientation, tail and eye motion in both freely swimming and head restrained preparations.

Proper citation: Stytra project (RRID:SCR_021416) Copy   

•   Source: SciCrunch Registry

https://github.com/jonnew/Oat

Software tool as real time position tracker for behavioral research. Used for processing images, extracting object position information, and streaming data to disk and/or the network in real time.

Proper citation: Online Animal Tracker (RRID:SCR_021412) Copy   

•   Source: SciCrunch Registry

https://www.iqvia.com/

IQVIA, formerly Quintiles and IMS Health, Inc., is an American multinational company serving the combined industries of health information technology and clinical research.

Proper citation: IQVIA (RRID:SCR_021377) Copy   

•   Source: SciCrunch Registry

https://github.com/pha4ge/SARS-CoV-2-Contextual-Data-Specification

Software package as collection template and associated materials for SARS-CoV-2 metadata. Contains metadata collection template based on data standard designed to harmonize genomic surveillance contextual data (sample metadata, epidemiological/clinical/laboratory data, methods information) across datasets, laboratories and databases during pandemic, and beyond. Template contains standardized fields, terms and formats for structuring information, and is accompanied by field level reference guide which provides definitions, guidance and examples for populating fields. Fields have been prioritized using colour coding system as required (yellow), recommended (purple), and optional (white). Users can use as much or as little of specification as they wish, according to their needs, and need not share information unless permitted to do so. SOP and protocols for submitting to public repositories are also included.

Proper citation: Public Health Alliance for Genomic Epidemiology SARS-CoV-2 Contextual Data Specification (RRID:SCR_021378) Copy   

•   Source: SciCrunch Registry