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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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TailTimer Resource Report Resource Website 1+ mentions |
TailTimer (RRID:SCR_021277) | instrument resource | Device for automating tail immersion assay. Used for measuring acute thermal pain in rodents. Software recognizes several specific RFID keys as user interface commands, which allows TailTimer to be operated via RFID fobs. | Automating tail immersion assay, measuring acute thermal pain, pain in rodents, thermal pain | SCR_021277 | 2026-09-05 06:29:37 | 1 | ||||||||||||
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KinTek Explorer Resource Report Resource Website 50+ mentions |
KinTek Explorer (RRID:SCR_021274) | data analysis software, data processing software, simulation software, software application, software resource | Software tool for fitting kinetic and equilibrium data based on numerical integration of rate equation from any model input user. Simulation and data-fitting software for research and education designed specifically for the field of chemical kinetics. | Kinetic data fitting, equilibrium data fitting, rate equation, data fitting, chemical kinetics | Restricted | SCR_021274 | 2026-09-05 06:29:37 | 54 | |||||||||||
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Software for generation of GB-speckles Resource Report Resource Website |
Software for generation of GB-speckles (RRID:SCR_021272) | GB-speckles | 1d time-series analysis software, 2d spatial image, data analysis software, data or information resource, data processing software, image, software application, software resource, time-series analysis software | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on March 23, 2022. | GB-speckles | RFBR 20-04-60349 | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_021272 | 2026-09-05 06:29:37 | 0 | |||||||||
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COVTree Resource Report Resource Website |
COVTree (RRID:SCR_021307) | COVTree | analysis service resource, data access protocol, production service resource, service resource, software resource, web service | Web server providing online analysis of coevolving amino acid pairs in overlapping genes, where residues might be located inside or outside overlapping region. | Coevolution analysis, coevolving amino acid pairs, overlapping genes, overlapping region, residues location | French Government ; French National Agency for Research against HIV and Hepatitis |
PMID:32374885 | Free, Freely available | SCR_021307 | Coevolution in OVerlapped sequences by Tree | 2026-09-05 06:29:37 | 0 | |||||||
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Bash Resource Report Resource Website 10+ mentions |
Bash (RRID:SCR_021268) | software resource | GNU Project shell. Sh-compatible shell that incorporates useful features from Korn shell (ksh) and the C shell (csh). Improvements offered by Bash include command-line editing, unlimited size command history,job control,shell functions and aliases,indexed arrays of unlimited size,integer arithmetic in any base from two to sixty four. | GNU Project shell, command-line editing, unlimited size command history, job control, shell functions and aliases, indexed arrays of unlimited size, integer arithmetic | Free, Freely available | SCR_021268 | Bourne Again SHell | 2026-09-05 06:29:37 | 19 | ||||||||||
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GRADEpro Resource Report Resource Website 500+ mentions |
GRADEpro (RRID:SCR_021308) | data management software, software application, software resource | Software tool used to create summary of findings tables for cochrane systematic reviews. Web application to create, manage and share summaries of research evidence called Evidence Profiles and Summary of Findings Tables. | Summary of findings tables, cochrane systematic reviews, research evidence creating, research evidence management, research evidence sharing summaries, evidence profiles, | is listed by: SoftCite | Restricted | https://cebgrade.mcmaster.ca/gradepro.html | SCR_021308 | Guideline Development Tool, GRADEpro GDT, GDT, GRADE Guideline Development Tool, G2DT | 2026-09-05 06:29:37 | 650 | ||||||||
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Nikon: Eclipse E200 microscope Resource Report Resource Website 1+ mentions |
Nikon: Eclipse E200 microscope (RRID:SCR_021243) | instrument resource | Educational microscope. Designed as simple system that reduces fatigue from use over long periods. With structure and anti mold design, offers high quality and accuracy that can be retained for years even in hot and humid environments. | Educational microscope, anti mold design microscope, instrument, equipment, USEDit | is listed by: USEDit | Commercially available | Model_Number_Eclipse_E200 | SCR_021243 | Eclipse E200, Eclipse E200 microscope | 2026-09-05 06:29:37 | 4 | ||||||||
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Nikon: ECLIPSE Ti inverted microscope system Resource Report Resource Website 10+ mentions |
Nikon: ECLIPSE Ti inverted microscope system (RRID:SCR_021242) | instrument resource | ECLIPSE Ti Series of inverted microscopes combined with Nikon NIS-Elements imaging acquisition and analysis software, enables to generate data faster, more easily, and more accurately than ever before.Product Discontinued. Replaced by ECLIPSE Ti2 Series. | ECLIPSE Ti Series, inverted microscopes, Nikon NIS-Elements software, instrument, equipment, USEDit | is related to: Nikon: ECLIPSE Ti2 inverted microscope | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_021242 | Model_Number_Ti | SCR_021242 | Nikon ECLIPSE Ti inverted microscope | 2026-09-05 06:29:37 | 41 | ||||||||
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XGBoost Resource Report Resource Website 100+ mentions |
XGBoost (RRID:SCR_021361) | software library, software resource, software toolkit | Open source software tool as library for implementation of gradient boosting with various machine learning algorithms.Optimized distributed gradient boosting library designed to be highly efficient, flexible and portable.Supports regression, classification, ranking and user defined objectives. | Machine learning, gradient boosting, supports regression, supports classification, supports ranking, tree boosting system | DOI:10.1145/2939672.2939785 | Free, Available for download, Freely available | https://github.com/dmlc/xgboost/, https://cran.r-project.org/web/packages/xgboost/index.html | SCR_021361 | eXtreme Gradient Boosting | 2026-09-05 06:29:38 | 173 | ||||||||
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igraph for R Resource Report Resource Website 50+ mentions |
igraph for R (RRID:SCR_021238) | data processing software, data visualization software, network graph visualization software, software application, software resource, software toolkit | Software R package of igraph network analysis library. | Graphs analysis, network analysis, generating graph function, graph visualization, R | is related to: igraph | Free, Available for download, Freely available | SCR_021238 | rigraph, R/igraph | 2026-09-05 06:29:37 | 68 | |||||||||
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ggraph Resource Report Resource Website 50+ mentions |
ggraph (RRID:SCR_021239) | data processing software, data visualization software, software application, software resource | Software tool as extension of ggplot2 aimed at supporting relational data structures such as networks, graphs, and trees. While it builds upon foundation of ggplot2 and its API it comes with its own self-contained set of geoms, facets, etc., as well as adding concept of layouts to grammar. | Relational data structures support, data networks, data graphs, data trees | is related to: ggplot2 | Free, Available for download, Freely available | https://CRAN.R-project.org/package=ggraph, https://github.com/thomasp85/ggraph/ | SCR_021239 | grammar of graphics for relational data | 2026-09-05 06:29:37 | 53 | ||||||||
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three.js Resource Report Resource Website 10+ mentions |
three.js (RRID:SCR_021357) | software library, software resource, software toolkit | Software tool as JavaScript 3D Library.Used to create and display animated 3D computer graphics on Web browser. Three.js scripts may be used in conjunction with HTML5 canvas element, SVG or WebGL. | Animated 3D computer graphics, JavaScript 3D library, create graphics, display graphics, 3D graphics | Free, Available for download, Freely available | SCR_021357 | 2026-09-05 06:29:38 | 16 | |||||||||||
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Zeiss: Lattice Lightsheet 7 Resource Report Resource Website 1+ mentions |
Zeiss: Lattice Lightsheet 7 (RRID:SCR_021237) | instrument resource | System for long term volumetric imaging of living cells. Makes light sheet fluorescence microscopy available for live cell imaging at subcellular resolution. Automated system for volumetric imaging of subcellular structures and dynamics over hours and days with protection from photo damage. | Instrument, equipment, USEDit, Lattice Light Sheet Microscopy, Gaussian light sheet microscopy, volumetric imaging of living cells, live cell imaging | is listed by: USEDit | Restricted | SCR_021237 | ZEISS Lattice Lightsheet 7 imaging system | 2026-09-05 06:29:36 | 1 | |||||||||
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Gridrec Resource Report Resource Website 1+ mentions |
Gridrec (RRID:SCR_021358) | data processing software, image analysis software, image reconstruction software, software application, software resource | Software tool for tomographic reconstruction. | Tomographic reconstruction | is related to: TomoPy | Free, Available for download, Freely available | https://github.com/tomopy/tomopy/blob/1.5.2/doc/source/ipynb/tomopy.rst | SCR_021358 | 2026-09-05 06:29:38 | 1 | |||||||||
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Roche: Ventana DISCOVERY Ultra Resource Report Resource Website 10+ mentions |
Roche: Ventana DISCOVERY Ultra (RRID:SCR_021254) | instrument resource | Immunohistochemistry processor that can be used for immunohistochemistry and in situ hybridization slide preparation and processing. With 30 individual slide drawers, DISCOVERY ULTRA system enables to run both manual and fully automated experiments simultaneously with nosynchronization errors. Provides ability to fully automate broad range of IHC and ISH assays, including FISH, gene and protein IHC/ISH, mRNA ISH and multiplex assays with any combination of IHC and ISH. | Immunohistochemistry processor, slide preparation, slide processing, instrument, equipment, USEDit | is listed by: USEDit | Commercially available | SCR_021254 | DISCOVERY ULTRA, Ventana DISCOVERY Ultra IHC/ISH research platform, VENTANA DISCOVERY ULTRA AUTOMATED SLIDE PREPARATION SYSTEM | 2026-09-05 06:29:37 | 18 | |||||||||
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ggalluvial Resource Report Resource Website 10+ mentions |
ggalluvial (RRID:SCR_021253) | data processing software, data visualization software, software application, software resource | Software tool as ggplot2 extension for alluvial plots. Used to visualize frequency distributions over time or frequency tables involving several categorical variables. Requires user to specify dimensions, either as separate aesthetics or as key-value pairs, relies on separate layers (stats and geoms) to produce strata, alluvia, and alluvial segments called lodes and flows. | Alluvial plots extension, visualize frequency distributions over time, visualize frequency tables involving several categorical variables, |
is listed by: CRAN works with: ggplot2 |
Free, Available for download, Freely available | https://CRAN.R-project.org/package=ggalluvial, https://github.com/corybrunson/ggalluvial/ | SCR_021253 | 2026-09-05 06:29:37 | 18 | |||||||||
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Minhee Analysis Package Resource Report Resource Website 1+ mentions |
Minhee Analysis Package (RRID:SCR_021250) | data analysis software, data processing software, software application, software resource, software toolkit, standalone software | Software package for detection and measurement of spontaneous synaptic events. Integrated software package for detection and management of spontaneous synaptic events. Used in neurophysiology to detect spontaneous postsynaptic currents, search and visualize them in custom way, and perform hypothesis testing of retrieved data. | Spontaneous synaptic events, synaptic events detecting, synaptic events sorting, quantifying PSC data, spontaneous postsynaptic currents, neurophysiology | DOI:10.1186/s13041-021-00847-x | Free, Available for download, Freely available | SCR_021250 | 2026-09-05 06:29:37 | 7 | ||||||||||
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Scholia Resource Report Resource Website 1+ mentions |
Scholia (RRID:SCR_021248) | data access protocol, software resource, web service | Software Python package and webapp for interaction with scholarly information in Wikidata. Wikidata profiling service.Wikidata service generating scholarly profiles, e.g. for authors, journals, topics, and organisations. | Scientific bibliographic information, Wikidata, Wikidata profiling service |
is listed by: Wikidata is related to: Wikidata |
Free, Available for download, Freely available | Wikidata_Q45340488 | https://www.wikidata.org/wiki/Q45340488, https://github.com/fnielsen/scholia | SCR_021248 | 2026-09-05 06:29:37 | 2 | ||||||||
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Appyters Resource Report Resource Website 10+ mentions |
Appyters (RRID:SCR_021245) | software resource, web application | Collection of web-based software applications that enable users to execute bioinformatics workflows without coding. Turns Jupyter notebooks into fully functional standalone web-based bioinformatics applications. Each Appyter application introduces data entry form for uploading or fetching data, as well as for selecting options for various settings. Once user presses Submit, Appyter is executed in cloud and user is presented with Jupyter Notebook report that contain results. Report includes markdown text, interactive and static figures, and source code. Appyter users can share the link to the output report, as well as download the fully executable notebook for execution on other platforms. | Jupyter Notebooks, data-driven web apps collection, Jupyter Notebook results report |
is used by: Hypothesis Center has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA |
NCI U24 CA224260; NHLBI U54 HL127624; NIH Office of the Director OT2 OD030160 |
DOI:10.1016/j.patter.2021.100213 | Free, Available for download, Freely available | https://github.com/MaayanLab/appyter, https://github.com/MaayanLab/appyter-catalog | SCR_021245 | 2026-09-05 06:29:37 | 16 | |||||||
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Attys project Resource Report Resource Website |
Attys project (RRID:SCR_021461) | data or information resource, instrument resource, portal, project portal | Portal related to biomedical signals.Provides wearable data acquisition device with special focus on biomedical signals such as heart activity (ECG), muscle activity (EMG) and brain activity (EEG).Open source high precision bluetooth data acquisition device. | Biomedical signals acquire, heart activity data acquire, muscle activity data acquire, brain activity data acquire, data acquisition device, bluetooth data acquisition device, OpenBehavior, Instrument | is listed by: OpenBehavior | Free, Freely available | SCR_021461 | Attys | 2026-09-05 06:29:40 | 0 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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