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https://github.com/chen42/tailTimer

Device for automating tail immersion assay. Used for measuring acute thermal pain in rodents. Software recognizes several specific RFID keys as user interface commands, which allows TailTimer to be operated via RFID fobs.

Proper citation: TailTimer (RRID:SCR_021277) Copy   

•   Source: SciCrunch Registry

http://www.kintekexplorer.com

Software tool for fitting kinetic and equilibrium data based on numerical integration of rate equation from any model input user. Simulation and data-fitting software for research and education designed specifically for the field of chemical kinetics.

Proper citation: KinTek Explorer (RRID:SCR_021274) Copy   

•   Source: SciCrunch Registry

https://disk.yandex.ru/d/SItlrfgmZeKhrQ

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on March 23, 2022.

Proper citation: Software for generation of GB-speckles (RRID:SCR_021272) Copy   

•   Source: SciCrunch Registry

http://www.lcqb.upmc.fr/COVTree/

Web server providing online analysis of coevolving amino acid pairs in overlapping genes, where residues might be located inside or outside overlapping region.

Proper citation: COVTree (RRID:SCR_021307) Copy   

•   Source: SciCrunch Registry

https://www.gnu.org/software/bash/

GNU Project shell. Sh-compatible shell that incorporates useful features from Korn shell (ksh) and the C shell (csh). Improvements offered by Bash include command-line editing, unlimited size command history,job control,shell functions and aliases,indexed arrays of unlimited size,integer arithmetic in any base from two to sixty four.

Proper citation: Bash (RRID:SCR_021268) Copy   

•   Source: SciCrunch Registry

https://gradepro.org/

Software tool used to create summary of findings tables for cochrane systematic reviews. Web application to create, manage and share summaries of research evidence called Evidence Profiles and Summary of Findings Tables.

Proper citation: GRADEpro (RRID:SCR_021308) Copy   

•   Source: SciCrunch Registry

https://www.microscope.healthcare.nikon.com/products/upright-microscopes/eclipse-e200

Educational microscope. Designed as simple system that reduces fatigue from use over long periods. With structure and anti mold design, offers high quality and accuracy that can be retained for years even in hot and humid environments.

Proper citation: Nikon: Eclipse E200 microscope (RRID:SCR_021243) Copy   

•   Source: SciCrunch Registry

https://www.microscope.healthcare.nikon.com/en_EU/products/inverted-microscopes/eclipse-ti-series

ECLIPSE Ti Series of inverted microscopes combined with Nikon NIS-Elements imaging acquisition and analysis software, enables to generate data faster, more easily, and more accurately than ever before.Product Discontinued. Replaced by ECLIPSE Ti2 Series.

Proper citation: Nikon: ECLIPSE Ti inverted microscope system (RRID:SCR_021242) Copy   

•   Source: SciCrunch Registry

https://xgboost.ai/

Open source software tool as library for implementation of gradient boosting with various machine learning algorithms.Optimized distributed gradient boosting library designed to be highly efficient, flexible and portable.Supports regression, classification, ranking and user defined objectives.

Proper citation: XGBoost (RRID:SCR_021361) Copy   

•   Source: SciCrunch Registry

https://igraph.org/r/

Software R package of igraph network analysis library.

Proper citation: igraph for R (RRID:SCR_021238) Copy   

•   Source: SciCrunch Registry

https://ggraph.data-imaginist.com/

Software tool as extension of ggplot2 aimed at supporting relational data structures such as networks, graphs, and trees. While it builds upon foundation of ggplot2 and its API it comes with its own self-contained set of geoms, facets, etc., as well as adding concept of layouts to grammar.

Proper citation: ggraph (RRID:SCR_021239) Copy   

•   Source: SciCrunch Registry

https://threejs.org/

Software tool as JavaScript 3D Library.Used to create and display animated 3D computer graphics on Web browser. Three.js scripts may be used in conjunction with HTML5 canvas element, SVG or WebGL.

Proper citation: three.js (RRID:SCR_021357) Copy   

•   Source: SciCrunch Registry

https://www.zeiss.com/microscopy/int/products/imaging-systems/lattice-lightsheet-7.html?utm_campaign=lattice-lightsheet-21&utm_source=stream&utm_medium=video&utm_term=pl-organic

System for long term volumetric imaging of living cells. Makes light sheet fluorescence microscopy available for live cell imaging at subcellular resolution. Automated system for volumetric imaging of subcellular structures and dynamics over hours and days with protection from photo damage.

Proper citation: Zeiss: Lattice Lightsheet 7 (RRID:SCR_021237) Copy   

•   Source: SciCrunch Registry

https://tomopy.readthedocs.io/en/1.5.2/ipynb/tomopy.html

Software tool for tomographic reconstruction.

Proper citation: Gridrec (RRID:SCR_021358) Copy   

•   Source: SciCrunch Registry

https://diagnostics.roche.com/us/en/products/instruments/discovery-ultra-research.html

Immunohistochemistry processor that can be used for immunohistochemistry and in situ hybridization slide preparation and processing. With 30 individual slide drawers, DISCOVERY ULTRA system enables to run both manual and fully automated experiments simultaneously with nosynchronization errors. Provides ability to fully automate broad range of IHC and ISH assays, including FISH, gene and protein IHC/ISH, mRNA ISH and multiplex assays with any combination of IHC and ISH.

Proper citation: Roche: Ventana DISCOVERY Ultra (RRID:SCR_021254) Copy   

•   Source: SciCrunch Registry

https://corybrunson.github.io/ggalluvial/

Software tool as ggplot2 extension for alluvial plots. Used to visualize frequency distributions over time or frequency tables involving several categorical variables. Requires user to specify dimensions, either as separate aesthetics or as key-value pairs, relies on separate layers (stats and geoms) to produce strata, alluvia, and alluvial segments called lodes and flows.

Proper citation: ggalluvial (RRID:SCR_021253) Copy   

•   Source: SciCrunch Registry

https://github.com/parkgilbong/Minhee_Analysis_Pack

Software package for detection and measurement of spontaneous synaptic events. Integrated software package for detection and management of spontaneous synaptic events. Used in neurophysiology to detect spontaneous postsynaptic currents, search and visualize them in custom way, and perform hypothesis testing of retrieved data.

Proper citation: Minhee Analysis Package (RRID:SCR_021250) Copy   

•   Source: SciCrunch Registry

https://scholia.toolforge.org/

Software Python package and webapp for interaction with scholarly information in Wikidata. Wikidata profiling service.Wikidata service generating scholarly profiles, e.g. for authors, journals, topics, and organisations.

Proper citation: Scholia (RRID:SCR_021248) Copy   

•   Source: SciCrunch Registry

https://appyters.maayanlab.cloud

Collection of web-based software applications that enable users to execute bioinformatics workflows without coding. Turns Jupyter notebooks into fully functional standalone web-based bioinformatics applications. Each Appyter application introduces data entry form for uploading or fetching data, as well as for selecting options for various settings. Once user presses Submit, Appyter is executed in cloud and user is presented with Jupyter Notebook report that contain results. Report includes markdown text, interactive and static figures, and source code. Appyter users can share the link to the output report, as well as download the fully executable notebook for execution on other platforms.

Proper citation: Appyters (RRID:SCR_021245) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/attys/

Portal related to biomedical signals.Provides wearable data acquisition device with special focus on biomedical signals such as heart activity (ECG), muscle activity (EMG) and brain activity (EEG).Open source high precision bluetooth data acquisition device.

Proper citation: Attys project (RRID:SCR_021461) Copy   

•   Source: SciCrunch Registry