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https://biospherix.com/proox-c21/

Compact O2 and CO2 Subchamber Controller used together with C-Chamber Incubator Subchamber from BioSpherix or chambers from other manufacturers.

Proper citation: BioSpherix: ProOx C21 Controller (RRID:SCR_021131) Copy   

•   Source: SciCrunch Registry

https://biofactoid.org

Web tool for creating digital profile of scientific discoveries in article and connecting them to related research. Authors describe molecular interactions supported by their results, letting researchers explore first hand account of article findings and connect to related articles and knowledge. Web based system for scientists to compose structured representation of networks of interactions between genes, their products, and chemical compounds, represented using power of formal ontology.

Proper citation: Biofactoid (RRID:SCR_021011) Copy   

•   Source: SciCrunch Registry

https://www.thermofisher.com/order/catalog/product/4472048?SID=srch-srp-4472048#/4472048?SID=srch-srp-4472048

Software supports QuantStudio12K Flex Real Time PCR System to open and analyze experiments. Enables to set up experiments, send experiments to instrument, control thermal cycling process in instrument, collect data and analyze collected data.

Proper citation: Applied Biosystems QuantStudio 12K Flex RT PCR Software (RRID:SCR_021096) Copy   

•   Source: SciCrunch Registry

https://biospherix.com/proox-360-2/

Versatile high infusion rate O2 controller.Controls Oxygen and may be used with BioSpherix C-Chamber Incubator Subchamber, C-Shuttle Glove Box, I-Glove Incubator Glove Box, Xvivo System Model X3 Cytocentric Cell Incubation and Handling Platfrom, or A-Chamber Animal Chamber. Featuring capability to infuse gas over range 1-140 SCFH, may be used together with chambers which are either home built or are available from other manufacturers.

Proper citation: BioSpherix: ProOx 360 Controller (RRID:SCR_021130) Copy   

•   Source: SciCrunch Registry

https://www.thermofisher.com/us/en/home/technical-resources/software-downloads/expressionsuite-software.html

Software tool to quantify relative gene expression across large number of genes and samples. Allows to analyze gene expression data on any current Applied Biosystems real time PCR instrument.

Proper citation: ExpressionSuite (RRID:SCR_021095) Copy   

•   Source: SciCrunch Registry

https://doi.org/10.1371/journal.pcbi.1005283.s004

Networks of extrasynaptic aminergic and peptidergic interactions in C. elegans

Proper citation: Multilayer Connectome of Caenorhabditis elegans (RRID:SCR_021009) Copy   

•   Source: SciCrunch Registry

https://biospherix.com/proox-110-2/

Compact, versatile O2 controller.Controls Oxygen and may be used with either C-Chamber Incubator Subchamber or A-Chamber Animal Chamber from BioSpherix. May be used with home-built or other manufacturers chambers.

Proper citation: BioSpherix: ProOx 110 Controller (RRID:SCR_021129) Copy   

•   Source: SciCrunch Registry

https://pubmed.ncbi.nlm.nih.gov/24356771/

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on March 15, 2021. Software tool for analysis of cross-linked peptides.

Proper citation: xProhet (RRID:SCR_021005) Copy   

•   Source: SciCrunch Registry

https://biospherix.com/proco2-120-2/

Controls CO2 levels for most physiologic concentrations and may be connected with either C-Chamber Incubator Subchambers or A-Chamber Animal Chambers from BioSpherix. May also be connected with chambers which are either home built or are available from other manufacturers. These include thermal incubators, flush boxes, culture chambers, glove boxes, and other semi sealed enclosures.

Proper citation: BioSpherix: ProCO2 120 Controller (RRID:SCR_021127) Copy   

•   Source: SciCrunch Registry

https://immuneml.uio.no/

Open source Python platform for machine learning based analysis and classification of adaptive immune receptors and repertoires. Supported by ELIXIR Norway.

Proper citation: immuneML (RRID:SCR_021004) Copy   

•   Source: SciCrunch Registry

https://yanglab.nankai.edu.cn/trRosetta/

Software tool for fast and accurate protein structure prediction. Builds protein structure based on direct energy minimizations with restrained Rosetta. Restraints include inter-residue distance and orientation distributions, predicted by deep residual neural network. Homologous templates are included in network prediction to improve accuracy for easy targets.

Proper citation: trRosetta (RRID:SCR_021181) Copy   

•   Source: SciCrunch Registry

https://biospherix.com/oxycycler-at82nn/

Provides either dynamic or static control of parts per million levels of nitric oxide (NO) and limits the undesirable elevation NO2 in animal models when used in combination with either one or two (1 or 2) A-Chamber Animal Chambers.

Proper citation: BioSpherix: OxyCycler AT82NN Controller (RRID:SCR_021188) Copy   

•   Source: SciCrunch Registry

https://traefik.io

Software tool based on open source solutions to make deploying microservices easy. Used for deployment of modern IT environments. Allows to expose applications to network in dynamic environment.Traefik Stack by Traefik Labs Inc. as cloud native stack to help enterprises manage their entire network across data centers, on-premises servers and public clouds.Tools options include Traefik Proxy,Traefik Enterprise,Traefik Mesh,Traefik Pilot.

Proper citation: Traefik (RRID:SCR_021221) Copy   

•   Source: SciCrunch Registry

https://github.com/hdmf-dev/hdmf-common-schema

Software tool to define collection of common, reusable data structures that build foundation for modeling of advanced data formats and is integrated with HDMF.Provided data structures include DynamicTable, VectorData, VectorIndex, ElementIdentifiers, DynamicTableRegion, AlignedDynamicTable and CSRMatrix.

Proper citation: HDMF Common Schema (RRID:SCR_021342) Copy   

•   Source: SciCrunch Registry

https://nwb-extensions.github.io/

Community led catalog of extensions to Neurodata Without Borders data standard.

Proper citation: Neurodata Extensions Catalog (RRID:SCR_021340) Copy   

•   Source: SciCrunch Registry

https://biospherix.com/oxycycler-at42n/

Provides either dynamic or static control of parts per million levels of nitric oxide (NO) in animal models modeling when used in combination with either one or two (1 or 2) A-Chamber Animal Chambers.

Proper citation: BioSpherix: OxyCycler AT42N Controller (RRID:SCR_021187) Copy   

•   Source: SciCrunch Registry

https://github.com/hdmf-dev/hdmf-docutils

Software tool for generating documentation for data standard schema defined using HDMF specification language. Collection of CLIs, scripts and modules useful to generate NWB documentation.

Proper citation: HDMF Documentation Utilities (RRID:SCR_021341) Copy   

•   Source: SciCrunch Registry

https://biospherix.com/oxycycler-a41ov/

Provides either dynamic or static control of O2 condition for animal modeling when used in combination with A-Chamber Animal Chamber.

Proper citation: BioSpherix: OxyCycler A41OV Controller (RRID:SCR_021182) Copy   

•   Source: SciCrunch Registry

https://biospherix.com/oxycycler-a42oc/

Provides either dynamic or static control of O2 and CO2 conditions for animal modeling when used in combination with one or two A-Chamber Animal Chamber(s).

Proper citation: BioSpherix: OxyCycler A42OC Controller (RRID:SCR_021183) Copy   

•   Source: SciCrunch Registry

https://github.com/BackofenLab/RNAProt

Software tool for modelling RNA binding protein binding preferences. Used to predict RPB binding sites. Computational RBP binding site prediction framework based on recurrent neural networks. Includes functionalities from dataset generation over model training to evaluation of binding preferences and binding site prediction.

Proper citation: RNAProt (RRID:SCR_021218) Copy   

•   Source: SciCrunch Registry