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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Case Western Reserve University School of Medicine Department of Pharmacology Resource Report Resource Website |
Case Western Reserve University School of Medicine Department of Pharmacology (RRID:SCR_007220) | data or information resource, department portal, organization portal, portal | Department of Pharmacology research mission is to discover specific mechanisms that control physiological processes at cellular and molecular levels. Department offers broad range of educational opportunities ranging from undergraduate research to classes leading toward Ph.D. and M.D.Training Programs include MOLECULAR THERAPEUTICS TRAINING PROGRAM, BIOMEDICAL SCIENCES TRAINING PROGRAM, MEDICAL SCIENTIST TRAINING PROGRAM, SUMMER UNDERGRADUATE RESEARCH PROGRAM, Cancer Pharmacology Training Program. | has parent organization: Case Western Reserve University; Ohio; USA | nif-0000-01911 | http://pharmacology.cwru.edu/ | SCR_007220 | Case Western; Dept. of Pharmacology, Case Western; SOM; Dept. of Pharmacology | 2026-09-12 01:00:36 | 0 | |||||||||
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FunGAP Resource Report Resource Website 1+ mentions |
FunGAP (RRID:SCR_023213) | FunGAP | simulation software, software application, software resource | Software tool to predict protein coding genes in fungal genome assembly. Performs gene prediction on given genome assembly and RNA-seq reads. Runs multiple gene predictors, evaluates all predicted genes, and assembles gene models that are highly supported by homology to known sequences. | Genome annotation, predict protein-coding genes, fungal genome assembly, RNA-seq reads, gene prediction | Rural Development Administration ; Republic of Korea ; School of Life Sciences and Biotechnology for BK21 PLUS ; Korea University |
PMID:28582481 | Free, Available for download, Freely available | SCR_023213 | Fungal Genome Annotation Pipeline | 2026-09-12 01:00:37 | 2 | |||||||
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airr_tools Resource Report Resource Website 1+ mentions |
airr_tools (RRID:SCR_023297) | software resource | Github repository for the paper "T cell receptor repertoire sequencing reveals chemotherapy-driven clonal expansion in colorectal liver metastases" by Høye et al. | Github repository for the paper, T cell receptor repertoire, repertoire sequencing, clonal expansion, colorectal liver metastases | Free, Available for download, Freely available | SCR_023297 | 2026-09-12 01:00:37 | 1 | |||||||||||
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Yevis web Resource Report Resource Website 1+ mentions |
Yevis web (RRID:SCR_023205) | software resource, web application | Web application for browsing Yevis workflow registry. | browsing Yevis workflow registry, Yevis workflow registry | is related to: Yevis cli | Free, Freely available | SCR_023205 | Yevis-web | 2026-09-12 01:00:37 | 1 | |||||||||
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loadBAM2ge_db Resource Report Resource Website 1+ mentions |
loadBAM2ge_db (RRID:SCR_015951) | data processing software, data visualization software, software application, software resource | Software pipeline that visualizes mapping results (in BAM format) on Genome Explorer. | bam, map, mapping, genome, pipeline, maser, visualization, explorer | Public | SCR_015951 | loadBAM2ge_db (PE) | 2026-09-12 01:00:35 | 1 | ||||||||||
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CURVES plus Resource Report Resource Website 10+ mentions |
CURVES plus (RRID:SCR_023268) | software resource, web application | Web server for analyzing and visualizing helical, backbone and groove parameters of nucleic acid structures. Can also be used to analyse molecular dynamics trajectories., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | analyzing, visualizing, helical, backbone and groove parameters, nucleic acid structures, molecular dynamics trajectories analysis, | Swiss National Science Foundation | PMID:19625494 PMID:21558323 |
THIS RESOURCE IS NO LONGER IN SERVICE | biotools:curves | https://bio.tools/curves | SCR_023268 | Curves+ | 2026-09-12 01:00:37 | 17 | ||||||
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Thermo Fisher: Sartorius: Octet BLI systems Resource Report Resource Website 10+ mentions |
Thermo Fisher: Sartorius: Octet BLI systems (RRID:SCR_023267) | instrument resource | Octet BLI systems enable real-time, label-free analysis for determination of kinetics, affinity and antibody/protein quantitation. Includes Octet Analysis Studio for analysis of assays measuring kinetics and affinity values for drug-target binding and high-throughput kinetic screening for lead identification. Typical applications include kinetic analysis of protein-protein, protein-small molecules, antibody-antigen, antibody-VLP, antibody-Fc gamma receptors, including antibody-neonatal receptor (FcRn) interactions. Additional applications supported include lot release and stability analysis of drug molecules based on binding kinetics and affinity. | Sartorius, Octet Analysis Studio, Bio-Layer Interferometry, protein quantitation, assays measuring kinetics analysis, affinity values analysis, instrument, equipment, USEDit | is listed by: USEDit | Restricted | SCR_023267 | Octet BLI systems, Octet BLI systems with Octet Analysis Studio | 2026-09-12 01:00:37 | 16 | |||||||||
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Enroll-HD Resource Report Resource Website 10+ mentions |
Enroll-HD (RRID:SCR_023300) | data or information resource, disease-related portal, portal, topical portal | Clinical research platform and longitudinal observational study for Huntington’s Disease families intended to accelerate progress towards therapeutics. Collaboration between Huntington’s disease families, clinicians, and researchers to accelerate progress toward effective treatments. | Clinical Research, clinical trails, Huntington’s Disease families, therapeutics, effective treatments, | Huntington’s disease | Cure HD Initiative Foundation | Free, Freely available | SCR_023300 | 2026-09-12 01:00:37 | 13 | |||||||||
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Eppendorf: Mastercycler nexus PCR Thermal Cycler Resource Report Resource Website 1+ mentions |
Eppendorf: Mastercycler nexus PCR Thermal Cycler (RRID:SCR_023266) | instrument resource | Thermal cycler conduct PCR runs with range of standard vessel types, from 0.2 mL tubes to 96 well plates using single 96-well aluminum block. Can accommodate 96-well PCR plates, 0.2 mL PCR tubes, 0.2 mL PCR tube strips, and 0.5 mL PCR tubes.Mastercycler nexus cycler can email you when PCR run is complete. | Eppendorf, Thermal cycler, PCR, 96-well PCR plates, 0.2 mL PCR tubes, 0.2 mL PCR tube strips, 0.5 mL PCR tubes, instrument, equipment, USEDit | is listed by: USEDit | Restricted | SCR_023266 | 2026-09-12 01:00:37 | 1 | ||||||||||
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GRIMER Resource Report Resource Website 1+ mentions |
GRIMER (RRID:SCR_023265) | data analysis software, data processing software, software application, software resource | Software tool to perform analysis of microbiome studies and generates portable and interactive dashboard integrating annotation, taxonomy and metadata with focus on contamination detection. | microbiome studies analysis, interactive dashboard, integrating annotation, integrating taxonomy, integrating metadata | Free, Available for download, Freely available | SCR_023265 | 2026-09-12 01:00:37 | 1 | |||||||||||
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Canadian Polar Data Network Resource Report Resource Website 1+ mentions |
Canadian Polar Data Network (RRID:SCR_023143) | data repository, service resource, storage service resource | Repository of metadata and data that describes and provides access to diverse data sets generated by Arctic and Antarctic researchers.Metadata records follow ISO 19115 and Federal Geographic Data Committee standard formats to provide exchange with other data centres.Records cover wide range of disciplines from natural sciences and policy, to health and social sciences. The PDC Geospatial Search tool is available to the public and researchers alike and allows searching data using mapping interface and other parameters. | is listed by: DataCite | Free, Freely available | DOI:10.5443 | https://doi.org/10.5443, https://dx.doi.org/10.5443 | SCR_023143 | Canadian Polar Data Network | 2026-09-12 01:00:35 | 2 | ||||||||
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University of Toledo Department of Neurosciences Resource Report Resource Website |
University of Toledo Department of Neurosciences (RRID:SCR_007487) | UT Department of Neuroscience | data or information resource, department portal, organization portal, portal | The Department of Neurosciences at the University of Toledo Health Sciences Campus is highly committed to advancing the state of knowledge of nervous system structure and function through a tripartite mission of innovative research, state-of-the-art teaching methods, and dedicated service to the broader academic and surrounding communities. | has parent organization: University of Toledo; Ohio; USA | nif-0000-02112 | SCR_007487 | 2026-09-12 01:00:36 | 0 | ||||||||||
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NicheNet Resource Report Resource Website 50+ mentions |
NicheNet (RRID:SCR_023158) | simulation software, software application, software resource | Software tool as R implementation of NicheNet method to predict active ligand-target links between interacting cells. NicheNet uses human or mouse gene expression data of interacting cells as input and combines this with prior model that integrates existing knowledge on ligand-to-target signaling paths. This allows to predict ligand-receptor interactions that might drive gene expression changes in cells of interest. | predict ligand-receptor interactions, intercellular communication, predict active ligand target interactions, interacting cells prediction, | Flemish Government ; Research Foundation—Flanders |
PMID:31819264 | Free, Available for download, Freely available | SCR_023158 | 2026-09-12 01:00:36 | 73 | |||||||||
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Lonza: 4D Nucleofector X Unit Resource Report Resource Website 10+ mentions |
Lonza: 4D Nucleofector X Unit (RRID:SCR_023155) | instrument resource | One of four functional modules of 4D-Nucleofector System. It supports Nucleofection of various cell numbers cells in different formats. | Instrument, equipment, Lonza, USEDit, electroporation based transfection, nucleofection, transfer of nucleic acids into cells, | is listed by: USEDit | SCR_023155 | 4D Nucleofector X Unit, 4D Nucleofector X Unit Amaxa technology | 2026-09-12 01:00:35 | 10 | ||||||||||
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Thermo Fisher: Cytomat 10 Hotel Ambient Storage Resource Report Resource Website |
Thermo Fisher: Cytomat 10 Hotel Ambient Storage (RRID:SCR_023273) | instrument resource | Storage used for high capacity random access storage (210 SBS microplates) at ambient conditions. The Cytomat 10 Hotel (PH) offers multiple transfer positions, dual access point (DAP) and as combined benchtop-under bench solution, it allows flexible placement within the laboratory. | ThermoFisher Scientific, ambient conditions storage, microplate storage, instrument, equipment, USEDit | is listed by: USEDit | Restricted | SCR_023273 | 2026-09-12 01:00:37 | 0 | ||||||||||
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QuestionPro Resource Report Resource Website 10+ mentions |
QuestionPro (RRID:SCR_023309) | software resource | Survey software to design and host questionaires. Used as survey creator. Enables to choose from survey question types ranging from net promoter score questions for efficient customer satisfaction surveys to advanced multiple-choice and logic-based research questions. | QuestionPro, Inc., design and host questionaires, survey creator, | Restricted | SCR_023309 | 2026-09-12 01:00:37 | 32 | |||||||||||
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QuantPrime Resource Report Resource Website 100+ mentions |
QuantPrime (RRID:SCR_015498) | software resource, web application | Fully automated tool for primer pair design in small- to large-scale real-time reverse transcription qPCR analyses. It offers design and specificity checking with highly customizable parameters and is available for use with publicly available eukaryotic transcriptomes. | primer design, primer pair design, rt-qpcr, reverse transcription qpcr | is listed by: SoftCite | DOI:10.1186/1471-2105-9-465 | Acknowledgement requested, Available as a web application, Available as a desktop application | SCR_015498 | 2026-09-12 01:00:35 | 162 | |||||||||
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Samurai Graph: A highly functional and user-friendly graph plotter Resource Report Resource Website |
Samurai Graph: A highly functional and user-friendly graph plotter (RRID:SCR_013594) | Samurai Graph | data processing software, data visualization software, software application, software resource | Samurai Graph is a highly functional and user-friendly graph plotter. It can plot the graphs from the scalar to vector type 2-dimensional data. Samurai Graph is an open source development project, released under the GNU Lesser General Public License (LGPL). Samurai Graph is Java-based and platform-independent application. It runs on most major operating systems including MS-Windows, Linux, MacOS X, FreeBSD., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | binary executable | has parent organization: RIKEN Brain Science Institute | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00374 | SCR_013594 | 2026-09-12 01:00:35 | 0 | ||||||||
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ModFit LT Resource Report Resource Website 100+ mentions |
ModFit LT (RRID:SCR_016106) | data processing software, data visualization software, software application, software resource | Modeling software for flow cytometry histograms. Models for cell-tracking dye studies and synchronized cell lines are built right into the software. | flow, cytometry, histogram, model, graph, cell, tracking, dye, cell line | is listed by: SoftCite | Commercially available, Available for purchase, Trial available | SCR_016106 | Verity Software House ModFit LT | 2026-09-12 01:00:35 | 154 | |||||||||
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PhysiCOOL Resource Report Resource Website 1+ mentions |
PhysiCOOL (RRID:SCR_023305) | PhysiCOOL | software library, software resource, software toolkit | Software Python library tailored to perform model calibration studies with PhysiCell. Generalized framework for model Calibration and Optimization Of modeLing projects. | perform model calibration studies, PhysiCell, Calibration and Optimization, modeling projects, | Free, Available for download, Freely available | SCR_023305 | Physi Calibration and Optimization Of modeLing | 2026-09-12 01:00:37 | 1 |
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