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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Enzymatics Resource Report Resource Website |
Enzymatics (RRID:SCR_012545) | Enzymatics | access service resource, commercial organization, core facility, service resource | Enzymatics is an independent, ISO 13485:2003 certified OEM manufacturer of enzymes that brings to the marketplace a unique, quality oriented, and customer focused approach to protein production. The company was founded in 2006 to specifically address the needs of commercial entities engaged in the development, manufacture, and distribution of platforms dedicated to nucleic acid identification. Enzymes are critical to the performance of these applications and the industry''s relentless pursuit of higher performance emphasizes the need for analytical reagent purity and absolute production consistency. Operating from the perspective that we are a manufacturing division of our customer, Enzymatics consistently delivers the highest quality and value enzymes, leveraging them to drive customer success via a partnership business model; and our tremendous success confirms the need in the marketplace for a dedicated partner in the realm of enzyme technologies. | is listed by: ScienceExchange | SciEx_4560 | SCR_012545 | 2026-09-05 06:30:04 | 0 | ||||||||||
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CEREP: In Vitro Pharmacology Resource Report Resource Website |
CEREP: In Vitro Pharmacology (RRID:SCR_007233) | analysis service resource, biomaterial analysis service, material analysis service, production service resource, service resource | Cerep offers a panel of over 630 validated in vitro pharmacological assays that cover a broad range of targets including receptors, ion channels, transporters, enzymes and second messengers. These assays are used to identify lead compounds, to define mechanism of action, and to identify off-target activities. All assays are available on an ad hoc basis. At any time, clients can select one or more assays to be tested against one or more compounds at one or more concentrations. In addition to ad hoc access, client specific and Cerep profiles are available. Client specific profiles can be adapted using any of the over 630 Cerep assays. Standard Profiles are designed by Cerep and available to all clients. The Standard Profiles are a rapid and cost effective way of prioritizing the most promising compounds in the lead selection process. Benefiting from increased efficiency generated from optimized processes, Cerep is happy to expand custom made profiles clients can design at set prices. While offering more flexibility, clients are able to select among predefined lists of functional GPCR, kinase and binding assays. Keywords: In vitro, Pharmacology, Assay, Target, Receptor, Ion channel, Transporter, Enzyme, Mechanism, Hoc, Compound, Kinase, GPCR, Secondary messenger, | nif-0000-30248 | SCR_007233 | CEREP Pharmacology | 2026-09-05 06:30:01 | 0 | |||||||||||
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CLC Genomics Workbench Resource Report Resource Website 100+ mentions |
CLC Genomics Workbench (RRID:SCR_011853) | data analysis software, data processing software, data visualization software, software application, software resource | Commercially available software for visualization and analysis of next generation sequencing data. Used for viewing, exploring, and sharing of NGS analysis results. Complete toolkit for genomics, transcriptomics, epigenomics, and metagenomics in one program. | ngs, next, generation, sequencing, gene, rna, visualisation, analysis |
is listed by: OMICtools is listed by: SoftCite works with: CLC Genomics Server |
Restricted | SCR_016245, OMICS_01124 | SCR_011853 | 2026-09-05 06:30:03 | 187 | |||||||||
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CaresBio Laboratory Resource Report Resource Website 1+ mentions |
CaresBio Laboratory (RRID:SCR_012393) | CBL | access service resource, commercial organization, core facility, service resource | CaresBio Laboratory (CBL) is a contract research organization, serving as a translational link with the one stop service approach to close the gaps between basic and clinical sciences for biomedical science community. We are serving academic laboratories, CROs, biotechnology and pharmaceutical companies and research organizations by providing high quality and cost effective pre-clinical and clinical research services. If you are doing biomarker and or drug discovery and development; therapeutics and translational research along with the applications of genomics and proteomics study; data validation and analysis; histopathology, immunohistochemistry, pathology or other immunostaining, imaging; histomorphometry, image analysis; small animal imaging; screening, efficacy and toxicity testing of your candidate compounds. We also provide biostatistics analysis of pre-clinical and or clinical data, data base developments or any subcategories of these fields. We do assay developments and provide customized assays to match your needs. | is listed by: ScienceExchange | SciEx_12995 | SCR_012393 | CaresBio Laboratory LLC | 2026-09-05 06:30:04 | 2 | |||||||||
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Core Genotyping Facility Resource Report Resource Website 10+ mentions |
Core Genotyping Facility (RRID:SCR_008438) | data or information resource, laboratory portal, organization portal, portal | With remarkable advances in genomic technologies, the National Cancer Institute established the Core Genotyping Facility (CGF) to investigate the contribution of germline genetic variation to cancer susceptibility and outcomes. Working in concert with epidemiologists, biostatisticians and basic research scientists in the intramural research program, the CGF has developed the capacity to conduct genome-wide association studies and candidate gene approaches to identify the heritable determinants of various forms of cancer. In order to ensure the accuracy and timely completion of all CGF provided operations, the following Information Systems were developed. While the investigator does not have direct access to these systems, their availability to CGF staff members greatly aids in their querying and reporting capabilities. In turn this provides benefit to the investigator by providing the most up to date reporting possible. The Core Genotyping Facility (CGF) offers a wide variety of sample preparation and genotyping operations. All samples received must meet minimum requirements and are taken through the Sample Handling pipeline prior to completing any genotyping. The Sample Handling pipeline includes DNA quantification and genetic fingerprinting. Also offered are Whole Genome Amplification (WGA) assays, to get the most yield out of low quantity DNA samples. Theirr genotyping products cover a wide-range of assay sizes. The CGF operates the Illumina BeadLab system which supports Illumina assay technologies including the whole genome genotyping Infinium assays, custom GoldenGate OPA assays, and Custom Infinium (iSelect) assays. In addition, the CGF offers Affymetrix GeneChip arrays and uniplex TaqMan genotyping. Sponsors: CGF is supported by the SAIC-Frederick. :Keywords: Genomic, Technology, Cancer, Genotyping, Germline, Genetic, Epidemiologist, Biostatistician, Research, Gene, Assay, Genotype, Pipeline, Genome, DNA, : | has parent organization: National Cancer Institute | nif-0000-30251 | SCR_008438 | CGF | 2026-09-05 06:30:02 | 10 | ||||||||||
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Baylor University Department of Psychology and Neuroscience Resource Report Resource Website |
Baylor University Department of Psychology and Neuroscience (RRID:SCR_007224) | data or information resource, department portal, organization portal, portal | Goal of Department is creation and dissemination of knowledge in psychological sciences, fostering environment conducive to creative scholarship and learning among both students and faculty, and application of knowledge to betterment and service of society. Offers Bachelor of Science and Bachelor of Arts degree in Psychology as well as few undergraduate degree programs in Neuroscience. | has parent organization: Baylor University; Texas; USA | nif-0000-01894 | SCR_007224 | Baylor University Psychology & Neuroscience, Baylor University Psychology and Neuroscience, Baylor Psychology and Neuroscience | 2026-09-05 06:30:01 | 0 | ||||||||||
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PhysioNet Resource Report Resource Website 500+ mentions |
PhysioNet (RRID:SCR_007345) | PhysioNet | analysis service resource, data analysis service, data or information resource, data repository, database, production service resource, service resource, storage service resource | Collection of dissemination and exchange recorded biomedical signals and open-source software for analyzing them. Provides facilities for cooperative analysis of data and evaluation of proposed new algorithm. Providies free electronic access to PhysioBank data and PhysioToolkit software. Offers service and training via on-line tutorials to assist users at entry and more advanced levels. In cooperation with annual Computing in Cardiology conference, PhysioNet hosts series of challenges, in which researchers and students address unsolved problems of clinical or basic scientific interest using data and software provided by PhysioNet. All data included in PhysioBank, and all software included in PhysioToolkit, are carefully reviewed. Researchers are further invited to contribute data and software for review and possible inclusion in PhysioBank and PhysioToolkit. Please review guidelines before submitting material. | physiologic, physiology, signal, software, research, biomedical, cardiopulmonary, neural, healthy, patient, cardiac, death, congestive heart failure, epilepsy, gait, disorder, sleep apnea, cardioogy, computation, physiologic signal, workspace, time series, FASEB list, DRKB |
is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: DataCite is listed by: re3data.org is listed by: FAIRsharing has parent organization: Massachusetts Institute of Technology; Massachusetts; USA; is parent organization of: CHB-MIT Scalp EEG Database is parent organization of: EEG Motor Movement/Imagery Dataset is parent organization of: Sleep-EDF Database |
Aging | NIBIB ; NIGMS ; NIH EB037545 |
PMID:22256277 PMID:14716615 PMID:14632011 PMID:11446213 PMID:10851218 |
Free, Freely available | r3d100011561, DOI:10.17616/R3D06S, nif-0000-00250, DOI:10.25504/FAIRsharing.bemzxg, DOI:10.13026 | https://doi.org/10.17616/R3D06S, https://doi.org/10.17616/r3d06s, https://doi.org/10.13026/, https://dx.doi.org/10.13026/, https://fairsharing.org/10.25504/FAIRsharing.bemzxg, https://doi.org/10.17616/R3D06S | SCR_007345 | Physionet: The Research Resource for Complex Physiologic Signals, PhysioNet, PhysioNet: The Research Resource for Complex Physiologic Signals | 2026-09-05 06:30:01 | 841 | |||
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SNPFILE Resource Report Resource Website 1+ mentions |
SNPFILE (RRID:SCR_009402) | software application, software library, software resource, software toolkit | Software library and API for manipulating large SNP datasets with associated meta-data, such as marker names, marker locations, individuals'' phenotypes, etc. in an I/O efficient binary file format. In its core, SNPFile assumes very little about the metadata associated with markers and individuals, but leaves this up to application program protocols. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, linux, unix | is listed by: Genetic Analysis Software | nlx_154641 | SCR_009402 | 2026-09-05 06:30:02 | 1 | ||||||||||
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Salamons Neuroanatomy and Neurovasculature Web-Atlas Resource Resource Report Resource Website 1+ mentions |
Salamons Neuroanatomy and Neurovasculature Web-Atlas Resource (RRID:SCR_007343) | Neuroanatomy and Neurovascular Atlas | atlas, data or information resource, training resource | Annotated images of human brain derived from CT, MRI, angiography and post-mortem sections and drawings. Brain vasculature: arteries, arterioles, veins. Pathological specimens. Quizzes and general information on brain structures and clinical syndromes. Extensive collection of images, many from pathological conditions. | neuroanatomy | has parent organization: University of California at Los Angeles; California; USA | nif-0000-00247 | SCR_007343 | Neuroanatomy and Neurovascular Atlas | 2026-09-05 06:30:01 | 2 | ||||||||
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Marshall University Medical Center Marshall Neuroscience Resource Report Resource Website |
Marshall University Medical Center Marshall Neuroscience (RRID:SCR_007460) | data or information resource, department portal, organization portal, portal | Purpose of Neuroscience department is to treat diseases of central and peripheral nervous systems and their supporting elements including skull and spine, as single system, utilizing expertise of variety of specialists, closely interacting with one another professionally with regard primarily for care of individual patient and their particular situation.Neuroscience department is committed to teaching and research in the fields of neurology and neruosurgery. Residents and medical students are welcome to rotate with us, or to join us for any of our scheduled lectures and conferences. | has parent organization: Marshall University Joan C. Edwards School of Medicine; West Virginia; USA | nif-0000-01992 | http://musom.marshall.edu/medctr/neuroscience/index.asp | SCR_007460 | Marshall University JCESOM Department of Neuroscience | 2026-09-05 06:30:01 | 0 | |||||||||
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University of Toronto Toronto Ontario Canada Pharmacology and Toxicology Resource Report Resource Website |
University of Toronto Toronto Ontario Canada Pharmacology and Toxicology (RRID:SCR_007536) | data or information resource, department portal, organization portal, portal | The Department of Pharmacology is among the oldest and largest in North America, with its official foundations in 1887, at the same time that the Faculty of Medicine was re-established in the University of Toronto. We offer training in pharmacology and toxicology to both undergraduate and graduate students who may subsequently go on to exciting research, regulatory and administrative careers in academic, industrial and healthcare provision settings.Current areas of research investigation in the Department include Receptor Pharmacology, Signal Transduction Pathways, Neuropharmacology, Drug Addiction Studies, Drug Metabolism and Pharmacokinetics, Pharmacogenetics, Cardiovascular Pharmacology, Clinical Pharmacology, Behavioural Pharmacology, Immunopharmacology, Endocrine Pharmacology and Molecular Toxicology. Our research laboratories are located not only in the core Department situated in the Medical Sciences Building on the downtown St. George campus, but also within a number of nearby university Departments, Faculties, university-affiliated research institutes and teaching hospitals. This strategic positioning also enables a wealth of potential opportunities for interdisciplinary collaboration with internationally recognized investigators within one of the largest and densest existing concentrations of biomedical research expertise in North America. | nif-0000-02277 | http://www.pharmtox.utoronto.ca/site3.aspx | SCR_007536 | U Toronto | 2026-09-05 06:30:01 | 0 | ||||||||||
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PLEXdb - Plant Expression Database Resource Report Resource Website 10+ mentions |
PLEXdb - Plant Expression Database (RRID:SCR_006963) | PLEXdb | analysis service resource, data analysis service, data or information resource, data repository, database, portal, production service resource, service resource, storage service resource, topical portal | PLEXdb (Plant Expression Database) is a unified gene expression resource for plants and plant pathogens. PLEXdb is a genotype to phenotype, hypothesis building information warehouse, leveraging highly parallel expression data with seamless portals to related genetic, physical, and pathway data. The integrated tools of PLEXdb allow investigators to use commonalities in plant biology for a comparative approach to functional genomics through use of large-scale expression profiling data sets. | gene expression, plant, plant pathogen, genotype, phenotype, genetic, physical, pathway, plant biology, compare, functional genomics, expression profiling, expression atlas, pathogen, genome, anova, cluster, bio.tools |
is listed by: Debian is listed by: bio.tools is related to: FuncExpression has parent organization: Iowa State University; Iowa; USA |
UniNSF DBI-0543441; NSF IOS-0922746; USDA 3625-21000-049-00D |
PMID:22084198 | biotools:plexdb, r3d100011516, nlx_149236 | https://bio.tools/plexdb, https://doi.org/10.17616/R39D13 | SCR_006963 | PLEXdb - Gene expression resources for plants and plant pathogens, Plant Expression Database | 2026-09-05 06:30:01 | 21 | |||||
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HDBase Resource Report Resource Website |
HDBase (RRID:SCR_007132) | HDBase | data or information resource, data set, disease-related portal, portal, topical portal | A community website for Huntington''s Disease (HD) research that currently contains Y2H and Mass spectrometry protein-protein interaction data centered around the HD protein (huntingtin) and information on therapeutic studies in mouse. Also available are raw Human and Mouse Affymetrix Microarray data. The protein interaction data is from several sources, including interactions curated from the literature by ISB staff, experimentally determined interactions produced by Bob Hughes and colleagues at Prolexys (currently password protected), and interactions reported in a recent publication by Goehler et al from Eric Wanker''s lab. Content areas that may be covered by the site include the following: * Therapeutic studies in mouse, primarily drug screens. * HD mouse models with a focus on timelines of disease progression. * Antibodies used in HD research. * Microarray gene expression studies. * Genes and proteins relevant to HD research. This includes HD itself, the growing list of proteins thought to interact directly or indirectly with huntingtin (Htt), and other genes and proteins implicated in the disease process. * Molecular pathways thought to be involved in the disease process. * Timelines of disease for Mouse models | drug, gene expression, huntingtin, mass spectrometry, microarray, protein interaction, protein-protein interaction, y2h, mouse model, treatment, disease, phenotype, brain, striatum, adipose, muscle, gene, protein, antibody, pathway |
uses: Cytoscape has parent organization: Institute for Systems Biology; Washington; USA |
Huntington''s disease, Control | Hereditary Disease Foundation | nif-0000-00153 | SCR_007132 | HDBase - A Community Website for Huntingtons Disease Research, HDBase - A Community Website for Huntington''s Disease Research | 2026-09-05 06:30:01 | 0 | ||||||
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Cytoseg Resource Report Resource Website 1+ mentions |
Cytoseg (RRID:SCR_009553) | Cytoseg | data processing software, image analysis software, segmentation software, software application, software resource | A tool for automatic segmentation of 3D biological datasets, with emphasis on 3D electron microscopy. It works best for 3D blob shaped objects like mitochondria, lysosomes, etc. The project is written in Python and uses the pythonxy platform (which includes scipy and ITK image processing tools). | computational neuroscience, neuropil, 3d electron microscopy, electron microscopy | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | GNU Lesser General Public License | nlx_155733 | http://www.nitrc.org/projects/cytoseg | SCR_009553 | 2026-09-05 06:30:02 | 1 | |||||||
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University of Arkansas for Medical Sciences Department of Pharmacology and Toxicology Resource Report Resource Website |
University of Arkansas for Medical Sciences Department of Pharmacology and Toxicology (RRID:SCR_007496) | data or information resource, department portal, organization portal, portal | THIS RESOURCE IS NO LONGER IN SERVICE, documented on January 25,2022. Department of Pharmacology and Toxicology is the professional home to 18 faculty, 11 research faculty, 22 graduate students and 3 postdoctoral fellows. They offer graduate training leading to the Ph.D. degree in Pharmacology or Interdisciplinary Toxicology. Their faculty also participate in the Interdisciplinary Biological Sciences (IBS) training programs. Trainees receive a broad-based education to prepare for a career in translational research. An emphasis on therapeutic development, identification of drug targets and mechanisms of organ injury prepare our trainees for a career in drug discovery and medical toxicology. All of our students currently receive a $24,000 yearly stipend and we pay tuition! Their 'magnet areas' for research include behavioral and drug abuse pharmacology, drug discovery and antibody therapeutics, mechanisms and therapies of organ toxicology and neurodegenerative diseases, and CNS and vascular ion channels. Extramural research funding obtained by the faculty has increased to more than 5 million annually, and the Department ranks in the top quarter of all medical school pharmacology departments in the country in NIH funding. | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-02134 | SCR_007496 | UAMS | 2026-09-05 06:30:01 | 0 | ||||||||||
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Michigan State University Labs and Facilities Resource Report Resource Website |
Michigan State University Labs and Facilities (RRID:SCR_012252) | MSU Labs & Facilities, MSU Labs and Facilities | access service resource, core facility, data or information resource, portal, service resource | An Portal, Core facility |
is listed by: ScienceExchange is related to: Michigan State University RTSF Genomics Core Facility is related to: MSU Comprehensive Phytopathogen Genomics Resource has parent organization: Michigan State University; Michigan; USA |
SciEx_1277 | SCR_012252 | Michigan State University Labs & Facilities | 2026-09-05 06:30:03 | 0 | |||||||||
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Yale School of Medicine Pharmacology Resource Report Resource Website |
Yale School of Medicine Pharmacology (RRID:SCR_010594) | data or information resource, department portal, organization portal, portal | The Department of Pharmacology at Yale University offers integrated and interdisciplinary opportunities for graduate study under the newly organized Program in Biological and Biomedical Sciences (BBS). Students entering the BBS program can take courses, participate in laboratory rotations, and perform thesis research with any of the more than 200 faculty members in the biological sciences at Yale located at the closely situated School of Medicine and Science Hill ends of campus. The faculty and students of the BBS program are organized into moderately-sized, interest-based Tracks to ensure individualized attention and maximize scientific interactions. Prospective students apply to the Track that best matches their interests, although there is complete freedom to work with faculty members in any Track or to switch Tracks after arrival at Yale. | has parent organization: Yale School of Medicine; Connecticut; USA | nlx_47908 | SCR_010594 | YSM Pharmacology | 2026-09-05 06:30:03 | 0 | ||||||||||
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Digital Fish Library Resource Report Resource Website |
Digital Fish Library (RRID:SCR_008338) | DFL | data or information resource, database, image collection, training resource | A database of 3D magnetic resonance (MRI) images of fish accessible to scientists, educators and the general public via the web. The Marine Vertebrate Collection at the Scripps Institution of Oceanography provides the majority of the DFL specimens. | education, fish, 3d, anatomical, magnetic resonance imaging, marine, mri, oceanography, comparative anatomy | has parent organization: University of California at San Diego; California; USA | NSF DBI-0446389 | nif-0000-24963 | SCR_008338 | DFL - Digital Fish Library | 2026-09-05 06:30:02 | 0 | |||||||
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Mendelspod Resource Report Resource Website |
Mendelspod (RRID:SCR_009027) | Mendelspod | blog, data or information resource, narrative resource, podcast | A collection of content, including podcasts and blogs, to advance life science research, connecting people and ideas in the life sciences. Mendelspod creates a space for probing conversations and deep insight into the topics and trends which shape the industry''s future and therefore our future as a species. The podcasts are engaging, thoughtful thirty minute shows twice a week on highly relevant topics to those working around the life sciences. Their format enables them to go in depth with scientists who are leaders in their field, or CEOs of high growth companies to explore trends and the latest technologies. At Mendelspod, they offer a front row seat to the revolution going on in biology, putting a human face on some complicated, highly technical topics. Here you can tune in to hear Steve Burrill give his ''state of the industry'' overview, or listen to George Church talk about art and science, or find out how the latest developments in NGS are helping in the war on cancer. The blogs cover the latest trends and products, and can be entertaining. Guest bloggers featured and welcomed. | genomics, personalized medicine, syn bio, biotech, pharma, health, life science, consulting, community building portal |
is used by: NIF Data Federation is used by: Integrated Blogs |
Protected by copyright, For personal, Non-commercial, Use, Or with written permission, Copyright notice must be retained | nlx_153912 | SCR_009027 | Mendelspod.com | 2026-09-05 06:30:02 | 0 | |||||||
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Fiber Tracking / DTI Checker Resource Report Resource Website |
Fiber Tracking / DTI Checker (RRID:SCR_007364) | data analysis software, data processing software, software application, software resource | A cross-platform system for exploring diffusion tensor images and to reconstruct fiber tracts between two regions of interest, intended for tdoctors, medical technicians or medical researchers. The Fiber-Tracking tool allows the user to load data from MRIs or similar images (like a basic 3D image viewer), load DTI datasets (7 diffusion- weighted images), calculate the fractional anisotropy (FA) and the mean diffusivity (MD) images, and also load ROIs to reconstruct fibers. | diffusion tensor imaging, tractography | has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA | nif-0000-00299 | http://www.ia.unc.edu/dev/download/fibertracking/index.htm, http://www.ia.unc.edu/dev/download/dtichecker/index.htm | http://www.ia.unc.edu/dev/download/index.htm | SCR_007364 | Fiber Tracking | 2026-09-05 06:30:01 | 0 |
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