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https://proq3.bioinfo.se/

Improved model quality assessments using Rosetta energy terms. Predictor combines training features from ProQRosCen, ProQRosFA and ProQ2.

Proper citation: ProQ3 (RRID:SCR_021880) Copy   

•   Source: SciCrunch Registry

https://biomedical-instruments.com/pdf/Narishige%20MF-830.pdf

Powerful microscope mounted to produce microelectrodes for patch clamping.

Proper citation: Narishige: MF 830 Microgrinder (RRID:SCR_022055) Copy   

•   Source: SciCrunch Registry

https://www.mines.edu/

Public research university in Golden, Colorado, founded in 1874. School offers both undergraduate and graduate degrees in engineering, science, and mathematics, with focus on energy and environment.

Proper citation: Colorado School of Mines; Golden; Colorado (RRID:SCR_022054) Copy   

•   Source: SciCrunch Registry

https://prosa.services.came.sbg.ac.at/prosa.php

Interactive web service for recognition of errors in three dimensional structures of proteins.

Proper citation: ProSA web (RRID:SCR_021879) Copy   

•   Source: SciCrunch Registry

http://www.geomapapp.org/

Web tool as map based application for browsing, visualizing and analyzing diverse suite of curated global and regional geoscience data sets. These cover geophysics, geology, geochemistry, physical oceanography, climatology, and more. Runs with Java under Windows, Mac OS X, Linux and Unix/Solaris operating systems.

Proper citation: GeoMapApp (RRID:SCR_021919) Copy   

•   Source: SciCrunch Registry

https://www.onsetcomp.com/products/software/bhw-pro-dld/

Weather data logging software used for all HOBO data loggers and wireless data nodes. Used to read out and plot data, and export to spreadsheets for further analysis.

Proper citation: HOBOware Pro (RRID:SCR_021915) Copy   

•   Source: SciCrunch Registry

http://www.mrivideo.com/visuastimdigital.php

Audio visual stimulation system for functional MRI (fMRI) applications.

Proper citation: Resonance Technology: VisuaStimDigital (RRID:SCR_021892) Copy   

•   Source: SciCrunch Registry

https://support.izon.com/qnano-control-suite-software

Data acquisition software. Allows raw or filtered measurement data to be viewed in real time. Part of qNano system. Izon Control Suite Software V3.4 is maintenance software release that updates Izon current software.

Proper citation: Izon Control Suite (RRID:SCR_021922) Copy   

•   Source: SciCrunch Registry

http://cprc.rcm.upr.edu/?q=node/117

Facilitates supply of conventional and specific pathogen free nonhuman primates and biological samples. Priority is given to NIH-funded investigators in universities, NIH Intramural Program, and contractors working on behalf of researchers conducting experiments under NIH-funded programs. Non-NIH-funded investigators may still be considered depending on resource availability.To request for CPRC animals, authorized representative of institution will need to submit Animal Allocation Request form.

Proper citation: University of Puerto Rico Caribbean Primate Research Center (RRID:SCR_021920) Copy   

•   Source: SciCrunch Registry

https://www.bio-rad.com/en-us/product/t100-thermal-cycler?ID=LGTWGIE8Z

Small compact 96well thermal cycler. PCR system features intuitive touch screen and thermal gradient technology to optimize reaction in single run.

Proper citation: Bio-Rad: T100 Thermal Cycler (RRID:SCR_021921) Copy   

•   Source: SciCrunch Registry

http://biomine.cs.vcu.edu/servers/MFDp2/

Web tool for accurate prediction of disorder in proteins by fusion of disorder probabilities, content and profiles.

Proper citation: MFDp2 (RRID:SCR_021885) Copy   

•   Source: SciCrunch Registry

https://prdos.hgc.jp/cgi-bin/top.cgi

Web server to predict natively disordered regions of protein chain from its amino acid sequence. Returns disorder probability of each residue as prediction results.

Proper citation: PrDOS (RRID:SCR_021886) Copy   

•   Source: SciCrunch Registry

http://sysbio.rnet.missouri.edu/3Drefine/

Interactive web server for efficient protein structure refinement with capability to perform web based statistical and visual analysis.

Proper citation: 3DRefine (RRID:SCR_021883) Copy   

•   Source: SciCrunch Registry

http://jspecies.ribohost.com/jspeciesws/#analyse

Web server for prokaryotic species circumscription based on pairwise genome comparison. Service for in silico calculating extent of identity between two genomes, parameter routinely used in process of polyphasic microbial species circumscription. Service measures average nucleotide identity.

Proper citation: JSpeciesWS (RRID:SCR_022059) Copy   

•   Source: SciCrunch Registry

https://github.com/mfruzan/HaploMaker

Software pipeline for haplotype assembly of diploid genomes using paired end or PacBio reads.

Proper citation: HaploMaker (RRID:SCR_021928) Copy   

•   Source: SciCrunch Registry

http://www.glycosciences.de/tools/linucs/

Service that directly converts the commonly used extended representation of complex carbohydrates into the preferred canonical description or into its inverted form. Input: A structure using the extended, non-graphic nomenclature (in ASCII writing) to describe complex carbohydrates as recommended by IUPAC. Output: A linear, unique notation. The source code (written in C), will be distributed so that software developers can easily implement their algorithm within their own application. LINUCS was chosen to fulfill to following conditions: * Input of extended, non-graphic nomenclature to describe carbohydrate structures. * Resulting linear code is closely related to notations and abbreviations recommended by IUPAC. * Number of additional rules to define the priority of the branches is low * Extended nomenclature of complex carbohydrates contains all information to define the hierarchy. * LINUCS is applicable to all types of carbohydrates (macrocyclic system are currently not implemented) . * Remaining unassigned linkage information are tolerated

Proper citation: LINUCS (RRID:SCR_001571) Copy   

•   Source: SciCrunch Registry

https://www.visualsonics.com/product/imaging-systems/vevo-3100

Vevo 3100 micro ultrasound imaging system reduces speckle noise and artifacts while preserving and enhancing critical information for small animal in vivo studies. System helps you visualize your data at high resolution.

Proper citation: Fujifilm: Vevo 3100 Imaging System (RRID:SCR_022152) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/MAMO

Ontology that is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features.

Proper citation: Mathematical Modelling Ontology (RRID:SCR_000910) Copy   

•   Source: SciCrunch Registry

http://interactome.org/index.php/Main_Page

This Wiki page provides information about Interactome of various species. An interactome of a species provides an important clues on how to interpret metabolic pathways of constituent enzymes and global protein network, which facilitates in turn to understand the mechanism responsible for the cellular functions.

Proper citation: Interactome Wiki (RRID:SCR_000750) Copy   

•   Source: SciCrunch Registry

https://microbiomedata.org

Platform facilitates comprehensive discovery of and access to multidisciplinary microbiome data in order to unlock new possibilities with microbiome data science. Multi organizational effort to integrate microbiome data across diverse areas in medicine, agriculture, bioenergy, and environment. Founded to support long term advancement of microbiome science.

Proper citation: National Microbiome Data Collaborative (RRID:SCR_022161) Copy   

•   Source: SciCrunch Registry