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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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JAX Animal Behavior System Resource Report Resource Website 1+ mentions |
JAX Animal Behavior System (RRID:SCR_023721) | JABS | software resource | Video based phenotyping platform for laboratory mouse. Provides complete details of software and hardware, including 3D designs used for data collection. Data acquisition system consists of video collection hardware and software, behavior labeling and active learning app, and online database for sharing classifiers. Hardware and software solution collects high quality data for behavior analysis. | OpenBehavior, data acquisition system, integrated mouse phenotyping platform, behavior analysis, | is listed by: OpenBehavior | Jackson Laboratory Directors Innovation Fund ; NIDA DA041668; NIDA DA048634 |
DOI:10.1101/2022.01.13.476229 | Free, Available for download, Freely available | SCR_023721 | 2026-09-05 06:30:26 | 1 | |||||||
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Nikon: XT H 225 ST uCT system Resource Report Resource Website 1+ mentions |
Nikon: XT H 225 ST uCT system (RRID:SCR_023687) | instrument resource | Provides insight into the inside of components and specimens, allowing users to visualize, analyze and measure complex internal geometry as well as surfaces, all non-destructively. Versatile microfocus CT system for high resolution inspection in R&D and failure analysis of components ranging from tiny plastic connectors up to aluminum castings. | USEDit, instrument, equipment, microfocus CT system, high resolution components inspection, components inspection, | Restricted | SCR_023687 | Nikon XTH 225 ST microfocus Computer Tomography system | 2026-09-05 06:30:25 | 2 | ||||||||||
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Andor Resource Report Resource Website 10+ mentions |
Andor (RRID:SCR_023609) | commercial organization | Provides development and manufacture of high performance scientific digital cameras, microscopy systems and spectrographs for academic, industrial and government applications. | Oxford Instruments, high performance scientific digital cameras, microscopy systems, spectrographs | is related to: Andor: Zyla 5.5 sCMOS | SCR_023609 | 2026-09-05 06:30:24 | 14 | |||||||||||
|
Bruker Daltonics Resource Report Resource Website 10+ mentions |
Bruker Daltonics (RRID:SCR_023608) | commercial organization | Bruker Daltonics is subsidary of Bruker Corporation American. Bruker is manufacturer of scientific instruments for molecular and materials research, as well as for industrial and applied analysis. | is related to: Bruker: timsTOF fleX with MALDI-2 | SCR_023608 | 2026-09-05 06:30:24 | 19 | ||||||||||||
|
Database Commons Resource Report Resource Website 10+ mentions |
Database Commons (RRID:SCR_023661) | catalog, data or information resource, database | Curated catalog of worldwide biological databases to provide landscape of biological databases throughout the world and enable easy retrieval and access to specific collection of databases of interest. Catalog of worldwide biological databases as well as their curated meta information and derived statistics. | Curated catalog, worldwide biological databases, curated meta information, | International Partnership Program of the Chinese Academy of Sciences ; National Natural Science Foundation of China ; Professional Association of the Alliance of International Science Organizations ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Youth Innovation Promotion Association of Chinese Academy of Sciences |
PMID:36572336 PMID:34718731 |
Free, Freely available | SCR_023661 | 2026-09-05 06:30:25 | 28 | |||||||||
|
SViCT Resource Report Resource Website 1+ mentions |
SViCT (RRID:SCR_023656) | data analysis software, data processing software, software application, software resource | Software tool for detecting structural variations from cell free DNA containing low dilutions of circulating tumor DNA. | detecting structural variations, cell free DNA, cfDNA, circulating tumor DNA low dilutions, ctDNA | Indiana University Grant Challenges Program ; National Science Foundation ; Natural Sciences and Engineering Research Council Discovery Frontiers Program ; Natural Sciences and Engineering Research Council Discovery Grant ; NIGMS GM108348; Precision Health Initiative ; Terry Fox Research Institute New Frontiers Program Project Grant |
PMID:30759232 | Free, Available for download, Freely available | SCR_023656 | Structural Variant detection in Circulating Tumor DNA | 2026-09-05 06:30:25 | 1 | ||||||||
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Poly Peak Parser Resource Report Resource Website 1+ mentions |
Poly Peak Parser (RRID:SCR_023776) | data access protocol, software resource, web service | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 25,2025. Web tool to parse Sanger sequencing chromatograms with double peaks into wildtype and alternative allele sequences. Used to separate chromatogram data containing ambiguous base calls into wildtype and mutant allele sequences.Used for identification of unknown indels using sanger sequencing of polymerase chain reaction products. | unknown indels identification, parse Sanger sequencing chromatograms, chromatograms with double peaks, separate chromatogram data, ambiguous base calls, wildtype sequences, mutant allele sequences, alternative allele sequences, | NHLBI 1F32HL115881; NHLBI U01HL0981; NHLBI U01HL098188 |
PMID:25160973 | THIS RESOURCE IS NO LONGER IN SERVICE | http://yosttools.genetics.utah.edu/PolyPeakParser/ | SCR_023776 | 2026-09-05 06:30:26 | 5 | ||||||||
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metaGOflow Resource Report Resource Website 1+ mentions |
metaGOflow (RRID:SCR_023674) | data analysis software, data processing software, software application, software resource | Software pipeline for marine Genomic Observatories data analysis. Used to address challenges of analysis of European Marine Omics Biodiversity Observation Network data. | Genomic Observatories, marine, marine biodiversity, metagenomic samples, | Free, Available for download, Freely available | SCR_023674 | 2026-09-05 06:30:25 | 1 | |||||||||||
|
Scaffold Resource Report Resource Website 100+ mentions |
Scaffold (RRID:SCR_014321) | data or information resource, portal, topical portal | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on June 1,2023. Visualize and validate complex MS/MS proteomics experiments | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_014321 | 2026-09-05 06:30:25 | 186 | ||||||||||||
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10x Genomics: Xenium Analyzer Resource Report Resource Website 1+ mentions |
10x Genomics: Xenium Analyzer (RRID:SCR_023910) | instrument resource | Xenium Analyzer offers subcellular profiling of 100s to 1,000s of RNA targets alongside multiplexed protein, in fresh, frozen or FFPE tissue. | 10x Genomics, subcellular profiling, RNA targets, multiplexed protein, fresh tissue, frozen tissue, FFPE tissue, |
works with: 10x Genomics Xenium Onboard Analysis works with: Xenium Ranger |
Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_023910.pdf | SCR_023910 | Xenium Analyzer | 2026-09-05 06:30:27 | 4 | ||||||||
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Forum Literature Propagation Resource Report Resource Website 1+ mentions |
Forum Literature Propagation (RRID:SCR_023874) | software resource | Method extending ’guilt by association’ principle to literature information by using Bayesian framework to suggest diseases associated with overlooked metabolites. | Metabolomic, Literature mining, Network-Analysis, Bayesian statistics, | Free, Available for download, Freely available | SCR_023874 | 2026-09-05 06:30:27 | 1 | |||||||||||
|
Rainin: Pipet-Lite LTS Pipette L-1000XLS+ Resource Report Resource Website |
Rainin: Pipet-Lite LTS Pipette L-1000XLS+ (RRID:SCR_023894) | instrument resource | Pipet-Lite™ XLS+ manual single-channel pipette, 100-1000 μL, uses LTS™ LiteTouch™ tips. Accurate and precise, ergonomic, autoclavable liquid end, rugged and durable (L-1000XLS+) | Pipette, 100 ul to 1000 ul, instrument, equipment, Rainin | Restricted | SCR_023894 | Pipet-Lite LTS Pipette L-1000XLS+ | 2026-09-05 06:30:27 | 0 | ||||||||||
|
Rainin: Pipet-Lite LTS Pipette L-200XLS+ Resource Report Resource Website |
Rainin: Pipet-Lite LTS Pipette L-200XLS+ (RRID:SCR_023892) | instrument resource | Pipet-Lite™ XLS+ manual single-channel pipette, 20-200 μL, uses LTS™ LiteTouch™ tips. Accurate and precise, ergonomic, autoclavable liquid end, rugged and durable (L-200XLS+) | Pipette, 20 ul to 200 ul, instrument, equipment, manual single channel pipette, Rainin | Restricted | SCR_023892 | , Pipet-Lite™ XLS+, Rainin Pipet-Lite™ XLS+ | 2026-09-05 06:30:27 | 0 | ||||||||||
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Nikon: N-SIM S Super Resolution Microscope Resource Report Resource Website |
Nikon: N-SIM S Super Resolution Microscope (RRID:SCR_023803) | instrument resource | Microscope enables super solution imaging of live cells at ten times the speed of conventional SIM. Powered by ECLIPSE Ti2-E Inverted Research Microscope, taking advantage of its advanced optics, stability and features. | Nikon, live cells imaging, imaging, USEDit | is listed by: USEDit | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_023803.pdf | SCR_023803 | N-SIM S Super Resolution Microscope | 2026-09-05 06:30:26 | 0 | ||||||||
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Hitachi: 16-bit 3-CCD color camera HV-F203GV / HV-F203SCL Resource Report Resource Website 1+ mentions |
Hitachi: 16-bit 3-CCD color camera HV-F203GV / HV-F203SCL (RRID:SCR_023888) | instrument resource | High resolution 1/1.8" 3 CCD Progressive Scan Color Camera with 1600 x 1200 pixel (UXGA) that is installed in the ZEISS Axioscan Z1 slide scanner. Integrated functions include electronic shutter from 1/30s to 1/100000s, Long term Integration up to 4s, AGC, external Trigger, Auto Shading, 6 Colour Masking, Frame-On-Demand Function, White Balance, AGC, Black Level Adjustment and Partial Scan Function. | Hitachi, CCD color camera, bright color, camera, instrument, equipment | is related to: Zeiss: Axio Scan.Z1 Slide Scanner | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_023888.pdf | SCR_023888 | HV-F203GV / HV-F203SCL camera | 2026-09-05 06:30:27 | 1 | ||||||||
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Molecular Devices: SpectraMax iD3 multi-mode microplate reader Resource Report Resource Website 10+ mentions |
Molecular Devices: SpectraMax iD3 multi-mode microplate reader (RRID:SCR_023920) | instrument resource | Microplate reader to measure absorbance, fluorescence and luminescence. | Microplate reader, measure absorbance, measure fluorescence, measure luminescence, | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_023920 | SCR_023920 | Molecular Devices SpectraMax iD3 multi-mode microplate reader, SpectraMax® iD3 multi-mode microplate reader | 2026-09-05 06:30:27 | 17 | |||||||||
|
IgDiscover Resource Report Resource Website 10+ mentions |
IgDiscover (RRID:SCR_024037) | data analysis software, data processing software, software application, software resource | Software to analyze antibody repertoires and discover new V genes from high-throughput sequencing reads.Heavy chains, kappa and lambda light chains are supported (to discover VH, VK and VL genes)., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | analyze antibody repertoires, discover new V genes, high-throughput sequencing reads, | is listed by: Debian | PMID:27995928 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_16456 | https://sources.debian.org/src/igdiscover/, https://github.com/NBISweden/IgDiscover/ | SCR_024037 | igdiscover | 2026-09-05 06:30:28 | 11 | ||||||
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caftools Resource Report Resource Website |
caftools (RRID:SCR_023982) | software resource | Software tools for manipulating Common Assembly Format files text format for describing sequence assemblies,that can be downloaded from the Sanger ftp site. | is listed by: Debian | Free, Available for download, Freely available | OMICS_24974 | https://sources.debian.org/src/caftools/ | SCR_023982 | 2026-09-05 06:30:28 | 0 | |||||||||
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BOLT-LMM Resource Report Resource Website 1+ mentions |
BOLT-LMM (RRID:SCR_023978) | data analysis software, data processing software, software application, software resource | Software statistical tool for identifying genetic associations. Used for genome wide association studies in large cohorts. | statistical tool, identifying genetic associations, genome wide association studies, large cohorts, | is listed by: Debian | PMID:25642633 | Free, Available for download, Freely available | OMICS_13504 | https://sources.debian.org/src/bolt-lmm/ | SCR_023978 | bolt-lmm | 2026-09-05 06:30:28 | 2 | ||||||
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QUINT Resource Report Resource Website 1+ mentions |
QUINT (RRID:SCR_023856) | data processing software, software application, software resource, workflow software | Software workflow includes suite of various software to form analysis pipeline of atlas-based quantifuication of labbeled features in histological images from mouse or rat brain. This workflow also suggests and explains with instructional videos the way these software work together. Used for quantification and spatial analysis of labelling in series of rodent brain section images based on available 3D reference atlases. | Allen Common Coordinate Framework, labelling quantification and spatial analysis, analysis pipeline of atlas based quantifuication of labbeled features, histological images, mouse brain, rat brain, images, brain section images, 3D reference atlases, |
is used by: WebNutil is related to: Allen Institute for Brain Science is related to: SeriesZoom has parent organization: University of Oslo; Oslo; Norway |
European Union’s Horizon 2020 Framework Programme for Research and Innovation under the Framework Partnership Agreement No. 650003 (HBP FPA) and the European Union’s Horizon Europe Programme for Research Infrastructures Grant Agreement No. 101147319 (EBRAINS 2.0). | PMID:31849633 | Free, Freely available | SCR_023856 | 2026-09-05 06:30:27 | 5 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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