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https://www.htximaging.com/htx-m5-sprayer
Sprayer builds on capabilities of HTX TM-Sprayer providing innovative M5 chassis, high velocity stage and heated sample holder drawer. Sample plate holder is mounted on drawer mechanism to allow easy loading of samples, better protection of user and better alignment of various plate types. New High-Velocity XY stage allows nozzle displacement speed of up to 5,600mm/min and expands process range. Super dry spray can be achieved at high flow rates of solvent further improving instrument performance. E/Z trough gutter design improves chemical containement and is easy to remove and clean. Bulkhead connectors are directly mounted on it to also allow easy access to in line filter.
Proper citation: HTXImaging: M5 Sprayer (RRID:SCR_023733) Copy
Open access integrated research platform, which links scientists, shared data, and analysis tools to accelerate Alzheimer’s disease research, disease preventions, treatments and cure. Unites diverse and geographically distributed network of data partners to foster cohort discovery, collaboration and sharing. Researchers can discover clinical, genetic, imaging and other data collected across many independent studies.
Proper citation: Global Alzheimers Association Interaction Network (RRID:SCR_023699) Copy
https://www.htximaging.com/tm-sprayer
Allows users to adjust both gas flow rate and nozzle velocity to control drying time, preventing analyte delocalization and formation of large matrix crystals, known to create hot spots on MALDI images. Allows to heat matrix solution as it is being applied to their sample. By increasing temperature of matrix solution, absorption of matrix into sample is increased, resulting in greater MALDI image resolution.
Proper citation: HTXImaging: TM-Sprayer (RRID:SCR_023732) Copy
https://andor.oxinst.cn/products/scmos-camera-series/zyla-4-2-scmos
Zyla 4.2 PLUS is the latest sCMOS technology advancement from Andor. At its heart, Zyla 4.2 PLUS benefits from latest generation sCMOS sensor technology, delivering a further 10 % boost in QE, resulting in an unprecedented 82% QEmax.
Proper citation: Andor: Zyla 4.2 sCMOS (RRID:SCR_023610) Copy
https://www.htximaging.com/htx-m3-sprayer
Sample preparation platform offering automated advanced MALDI matrix sprayer.
Proper citation: HTXImaging: M3+ Sprayer (RRID:SCR_023731) Copy
https://bioconductor.org/packages/release/bioc/html/mia.html
Software R package with several tools for microbiome data analysis.
Proper citation: mia (RRID:SCR_023619) Copy
Mass spectrometer designed for most difficult analytical challenges. Incorporates inventions in ion transmission and control, extended m/z range, and real-time decision making. System suited for proteomics, structural biology, small-molecule, and biopharmaceutical characterization experiments.
Proper citation: Thermo Fisher: Orbitrap Eclipse Tribrid mass spectrometer (RRID:SCR_023618) Copy
https://www.cancergenomeinterpreter.org/home
Platform that systematizes interpretation of cancer genomes and makes it automatic. Web tool to annotate genomic alterations and interpret their possible role in tumorigenesis and in response to anti cancer therapies. Used to support identification of tumor alterations that drive disease and/or which may be therapeutically actionable. Analyses mutations including single nucleotide changes and small insertions/deletions, copy number alterations including gene amplifications and deletions and translocations.
Proper citation: Cancer Genome Interpreter (RRID:SCR_023752) Copy
https://www.viewpoint.fr/product/zebrafish/cardiology/microzebralab
Software tool to extract cardiovascular parameters from transmitted light videos of zebrafish embryos or larvae. Used to investigate live and in non-invasive way scope of zebrafish larvae physiological parameters. Measures heartbeat and blood flow.
Proper citation: ViewPoint MicroZebraLab (RRID:SCR_023750) Copy
Resource enables integrative exploration of genetic and epigenetic basis of development of Type 2 Diabetes, together with other associated functional, molecular and clinical data, centered in biology and role of pancreatic beta cells.The gene expression regulatory variation landscape of human pancreatic islets.
Proper citation: TIGER Data Portal (RRID:SCR_023626) Copy
https://www.zeiss.com/microscopy/en/products/software/zeiss-zen-lite.html
Software tool for basic image acquisition and analysis. Zeiss ZEN microscopy software to control of axiocam microscope cameras, image transformation and measurements, image processing, image alignment for correlative microscopy, various visualization options.
Proper citation: Zeiss Zen Lite (RRID:SCR_023747) Copy
Platform provides maps and spatial data for all countries and their sub-divisions. You can browse maps or download data to make your own maps.
Proper citation: GADM (RRID:SCR_023746) Copy
Web service to predict involvement of upstream cell signaling pathways, given signature of differentially expressed genes. Used to linking expression signatures to upstream cell signaling networks.
Proper citation: X2K Web (RRID:SCR_023624) Copy
https://www.bibliometrix.org/home/
Software R package for comprehensive science mapping analysis. Used for quantitative research in scientometrics and bibliometrics that includes all main bibliometric methods of analysis.
Proper citation: bibliometrix (RRID:SCR_023744) Copy
Platform that facilitates data driven hypothesis generation for diabetes and related metabolic disorder research community. Curated transcriptomics datasets from various Type 2 Diabetes studies are made available for download, visualization, and enrichment analysis.
Proper citation: Diabetes Data and Hypothesis Hub (RRID:SCR_023629) Copy
Promptable segmentation system with zero shot generalization to unfamiliar objects and images, without need for additional training. Github repository provides code for running inference with SegmentAnything Model, links for downloading trained model checkpoints, and example notebooks that show how to use the model.
Proper citation: Segment Anything Model (RRID:SCR_023680) Copy
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on June 1, 2023. Software designed to take single or multi-wavelength intracellular ion measurements an provide simultaneous display of the raw data, ratio image, graphs of intensities, ratios, ion concentrations, and a non-ratiometric image for microscope techniques such as a brightfield or phase-contrast image. Two different ratiometric indicators can be imaged and measured simultaneously to provide greater insight to ion exchange and intracellular function regardless of dye loading concentrations, conditions, or emission intensities.
Proper citation: MetaFluor Fluorescence Ratio Imaging Software (RRID:SCR_014331) Copy
https://www.cubi.bihealth.org/software/varfish/
Web application for quality control, filtering, prioritization, analysis, and user based annotation of DNA variant data with focus on rare disease genetics. Comprehensive DNA variant analysis for diagnostics and research.
Proper citation: VarFish (RRID:SCR_023710) Copy
Inverted microscope Axio Observer 3 for transmitted light brightfield LED and differential interference contrast. Used for demanding multimodal imaging.
Proper citation: Zeiss: Axio Observer 3 (RRID:SCR_023693) Copy
https://github.com/mskcc/lohhla
Software tool to evaluate HLA loss using next-generation sequencing data. Computational tool to determine HLA allele-specific copy number from sequencing data.
Proper citation: LOHHLA (RRID:SCR_023690) Copy
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